BAC Information

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BAC

Clone NameB6Ng01-096J02
Chromosome17 (Build37)15 (Build37)
Map Location 21,711,805 - 21,712,88946,836,732 - 46,837,265
singlet/doubletsingletsinglet
Overlap geneBC049807
Upstream geneEG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096J02.bB6Ng01-096J02.g
ACCDH907180DH907181
length1,074964
definitionDH907180|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J02, 5' end.DH907181|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,711,805 - 21,712,889)(46,836,732 - 46,837,265)
sequence
gaattcatgccatggccaaaacccaagtcttggaagtataaatccaaggg
cacaacttattgatgttttcttaacaaatacattattaacctgccatcta
aatattcagatttataattaacagtttgcactactttccagtctggtaaa
agaaccctcctcttcttgtaggaggtggataatgaagagacccataactg
tgcagaaagtactaagaacgaggaattgtgtaagataggaccgattacca
tttcatcatagttagcagaggatcctctagtcttgtttacctcaaggggt
gtggggaggactggctgttaatggcagctatacgatttttaatttagagt
attggttaatacttcccaatttttcttctgtagtgtaaaatgaatttctt
tataccttcagagatttcttccttatttttttaaccactttggtttttct
tgcatgggatttttctgtgtagtcctggctgttttagaatttgcagtgta
gaccatgctcaccttgaactcagagatccacttgcttctgcctccagagg
gcaggtactaaaggttacaccaggaagcccagaataattggggattttta
agctctgtctgagcatgcctgtgatgtcacatacatatctcatctacatc
ttcacactttcttatcttcttactatttgtaaggtttgactctactatga
tgattttgaagatgaatgagaaatgatactttattagagtacttttatgt
gttttctctcttgatgaatttcttttacgtcagcaatttcagcactagat
aaaggctttgttgaattcgatgcacttggtgggtataattttcaatggga
agcaagacttggagattatatatgacatacctttatatggattcgcagag
gtatgactgtgtgatttacacacattagaagtctttaaactatttaatta
cctttgtcatattatttttgagatatggggtatatatagttcatcagggt
atcctagacttgctatgtagaccagagatcttgcctttgccacccaaata
ctggaataatgatgggtcccacct
gaattcacatctgatgcaatgaacatgggtactgggtatgtggagtagga
tgtgagtttgctaattcattcaagcagaaacctggtgaatatgtgtggga
atggattttaagggtgtgggataaggggggtcttgctgttctgtagaaga
ggtatcagtcttctctattaacctaatatgaattaaatcttgcaaaagca
ttcccagaaaattgggtttacactgatatgggatcatgtcatgatgtcaa
ttaatatacacactgataaaaacaatcacatattgtttgaaatatgagtt
catcctcgaacacaaaagccagataaagcagtccaattaggggaatagga
tccacaggtaggtatcagagttaaggagcccttgctccagttggttgaag
acccttatgaagcacaagctgcatatctcctacataagtgcaggaattct
tggtttaacccatgctaaaaccggttagtggttcagtctctgggagctcc
caagagcccaggtaattggtcttcctgtgaaattcctatcccttcagttc
cctcaatctttctccaactcttccataagactccccttactcaatgtaat
attttggctatgggtctctgcatctgtttcagtcagctatctagctagag
cctctcagaggagaggtatgctaagctcctgtctacaagcctcacaaagt
attattaatagtagcagggattggttcttgcccataggataggtctcaaa
ttgtgccaggtcattcctttggtgggctattccctcgggatctgttccat
cttttgtctcgagatgtccttgcaaacaaataatggataaaaaatgtggt
tcttttacacaatataacactacttcagctattaaaagcagtaacattat
gaacttggcgggaaataatattgcttctaaatagaactatttttcttttc
cattttaatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21711805_21712889
seq2: B6Ng01-096J02.b_43_1116 (reverse)

seq1  AGGTGGGACACATCATTAATTCCAGTATTTGGGTGGCAAAGGCAAGATCT  50
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  AGGTGGGACCCATCATT-ATTCCAGTATTTGGGTGGCAAAGGCAAGATCT  49

seq1  CTGGTCTACATAGCAAGTTCTAGGATACCCTGAATGAACTATATATACAC  100
      ||||||||||||||||| |||||||||||||| ||||||||||||||| |
seq2  CTGGTCTACATAGCAAG-TCTAGGATACCCTG-ATGAACTATATATACCC  97

seq1  CATATCTCAAAAAATAATAATGACAAAAGGTAATTAAATAAGTTTTAAAG  150
      |||||||| ||||||||| ||||| |||||||||||||||   |||||||
seq2  CATATCTC-AAAAATAAT-ATGAC-AAAGGTAATTAAATA--GTTTAAAG  142

seq1  ACTTCTAATTGTGTTGTAAATCACAAAGGTCATACTTCTGAGAATCCATA  200
      |||||||| |||| ||||||||||| | ||||||| |||| |||||||||
seq2  ACTTCTAA-TGTG-TGTAAATCACACA-GTCATACCTCTGCGAATCCATA  189

seq1  TAAAGGTATGTCATATATAATCTCCAAGTCTTGCTTCCCATTGAAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTATGTCATATATAATCTCCAAGTCTTGCTTCCCATTGAAAATTA  239

seq1  TACCCACCAAGTGCATTGAATTCAACAAAGCCTTTATCTAGTGCTGAAAT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACCCACCAAGTGCATCGAATTCAACAAAGCCTTTATCTAGTGCTGAAAT  289

seq1  TGCTGACGTAAAAGAAATTCATCAAGAGAGAAAACACATAAAAGTACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACGTAAAAGAAATTCATCAAGAGAGAAAACACATAAAAGTACTCT  339

seq1  AATAAAGTATCATTTCTCATTCATCTTCAAAATCATCATAGTAGAGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTATCATTTCTCATTCATCTTCAAAATCATCATAGTAGAGTCAA  389

seq1  ACCTTACAAATAGTAAGAAGATAAGAAAGTGTGAAGATGTAGATGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACAAATAGTAAGAAGATAAGAAAGTGTGAAGATGTAGATGAGATA  439

seq1  TGTATGTGACATCACAGGCATGCTCAGACAGAGCTTAAAAATCCCCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGACATCACAGGCATGCTCAGACAGAGCTTAAAAATCCCCAATT  489

seq1  ATTCTGGGCTTCCTGGTGTAACCTTTAGTACCTGCCCTCTGGAGGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGCTTCCTGGTGTAACCTTTAGTACCTGCCCTCTGGAGGCAGAA  539

seq1  GCAAGTGGATCTCTGAGTTCAAGGTGAGCATGGTCTACACTGCAAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGATCTCTGAGTTCAAGGTGAGCATGGTCTACACTGCAAATTCT  589

seq1  AAAACAGCCAGGACTACACAGAAAAATCCCATGCAAGAAAAACCAAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCAGGACTACACAGAAAAATCCCATGCAAGAAAAACCAAAGTG  639

seq1  GTTAAAAAAATAAGGAAGAAATCTCTGAAGGTATAAAGAAATTCATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAATAAGGAAGAAATCTCTGAAGGTATAAAGAAATTCATTTTA  689

seq1  CACTACAGAAGAAAAATTGGGAAGTATTAACCAATACTCTAAATTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGAAGAAAAATTGGGAAGTATTAACCAATACTCTAAATTAAAAA  739

seq1  TCGTATAGCTGCCATTAACAGCCAGTCCTCCCCACACCCCTTGAGGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATAGCTGCCATTAACAGCCAGTCCTCCCCACACCCCTTGAGGTAAA  789

seq1  CAAGACTAGAGGATCCTCTGCTAACTATGATGAAATGGTAATCGGTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTAGAGGATCCTCTGCTAACTATGATGAAATGGTAATCGGTCCTA  839

seq1  TCTTACACAATTCCTCGTTCTTAGTACTTTCTGCACAGTTATGGGTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACAATTCCTCGTTCTTAGTACTTTCTGCACAGTTATGGGTCTCT  889

seq1  TCATTATCCACCTCCTACAAGAAGAGGAGGGTTCTTTTACCAGACTGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCCACCTCCTACAAGAAGAGGAGGGTTCTTTTACCAGACTGGAA  939

seq1  AGTAGTGCAAACTGTTAATTATAAATCTGAATATTTAGATGGCAGGTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGCAAACTGTTAATTATAAATCTGAATATTTAGATGGCAGGTTAA  989

seq1  TAATGTATTTGTTAAGAAAACATCAATAAGTTGTGCCCTTGGATTTATAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATTTGTTAAGAAAACATCAATAAGTTGTGCCCTTGGATTTATAC  1039

seq1  TTCCAAGACTTGGGTTTTGGCCATGGCATGAATTC  1085
      |||||||||||||||||||||||||||||||||||
seq2  TTCCAAGACTTGGGTTTTGGCCATGGCATGAATTC  1074

seq1: chr15_46836732_46837265
seq2: B6Ng01-096J02.g_490_1029 (reverse)

seq1  AATAAATTAAAATGGAAAAGAAAAATAGTTCTATTTAGAAGCTATATTAA  50
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  AATAAATTAAAATGGAAAAGAAAAATAGTTCTATTTAGAAGCAATATT-A  49

seq1  TTGCCTGCAAAGTTCATAATGTTACTGCTTTTAATAGCTG-AGTAGTGTT  99
      || || || ||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCCCGCCAAGTTCATAATGTTACTGCTTTTAATAGCTGAAGTAGTGTT  99

seq1  TTATTGTGTAAATGAACCACATTTTCTATCCATTATTTGTTTGC-AGGAC  148
       ||||||||||| |||||||||||| |||||||||||||||||| |||||
seq2  ATATTGTGTAAAAGAACCACATTTTTTATCCATTATTTGTTTGCAAGGAC  149

seq1  ATCTTGGGAC-AAAGATGGAACAGATCCTGAGGGAATAG-CCACC-AATG  195
      |||| | ||| ||||||||||||||||| |||||||||| ||||| || |
seq2  ATCTCGAGACAAAAGATGGAACAGATCCCGAGGGAATAGCCCACCAAAGG  199

seq1  AATGA-CTGGCACAATTTGAGACCTATCCTATGGGCAAGAACCAATCCCT  244
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTGGCACAATTTGAGACCTATCCTATGGGCAAGAACCAATCCCT  249

seq1  GCTACTATTAATAATACTTTGTGAGGCTTGTAGACAGGAGCTTAGCATAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTATTAATAATACTTTGTGAGGCTTGTAGACAGGAGCTTAGCATAC  299

seq1  CTCTCCTCTGAGAGGCTCTAGCTAGATAGCTGACTGAAACAGATGCAGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTGAGAGGCTCTAGCTAGATAGCTGACTGAAACAGATGCAGAG  349

seq1  ACCCATAGCC-AAATATTACATTGAGTAAGGGGAGTCTTATGGAAGAGTT  393
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAGCCAAAATATTACATTGAGTAAGGGGAGTCTTATGGAAGAGTT  399

seq1  GGAGAAAGATTGAGGGAACTGAAGGGATAGGAATTTCACAGGAAGACCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGATTGAGGGAACTGAAGGGATAGGAATTTCACAGGAAGACCAA  449

seq1  TTACCTGGGCTCTTGGGAGCTCCCAGAGACTGAACCACTAACCGGTTTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGGCTCTTGGGAGCTCCCAGAGACTGAACCACTAACCGGTTTTA  499

seq1  GCATGGGTTAAACCAAGAATTCCTGCACTTATGTAGGAGAT  534
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTTAAACCAAGAATTCCTGCACTTATGTAGGAGAT  540