BAC Information

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BAC

Clone NameB6Ng01-096L07
Chromosome15 (Build37)
Map Location 17,209,718 - 17,210,450
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L07.g
ACCDH907281
length1,012
definitionDH907281|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataggcctgtctgatgaccaaacactcatcttgatttgccattt
aagaaggacggaaaataccctctctttattgcatcctgtcttcacctaaa
tgtaggtttgagaatcctgtctgacagccctgtctgctgtcctgggagca
ctgccatgtggatggtgcccgcgccatctctggtgatcctgccgccctga
agaaacctttttggtttggggtaaatacacgcactcacacacacatacgg
gattcattccagaatgcatcatctgtgaacctgatgtggaggggcatgac
tcataccacctgactgagtacttcactcggcttcaaaaaaatgttatcaa
ctttttttttaaaataggatgaaaggaaaacatgtatatagccataaaaa
atattggatatatattttgtttaagctttttcatcctgttggttattatc
cacacttgcttaacacaacataaacataaatacattcattaatctgggtc
aatggcatggacgagtacttaactgaacataaaatctatatttagtaaag
ttgtacaagctgattacacatgcaatactacacattgagagtgggttaca
ttgctttcttctaagcatatttaacttaaactggctgagtacactataga
atagcaggttaagtatgtagcctaaaatactatcaagaactatagacatg
gctgctagacccgagaaaattgcagtccctccaaaaatgaagtgttttat
acaaaatacattactacatgtatgtattgtgaaattgttatctctatcaa
gccaagtaatatataatgtacgtctaatgtcgtcactttgtacacaaaga
ctccgtcactgctttgtactctcaaaatagtcctataaattttgaagatg
actcattcaatgcctgtgtcatttactcgtcacgtattttatacatcaaa
gacagatcatgtctcataagaccacgactgctcatgactgaagcccaagt
gggtgctgggaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17209718_17210450
seq2: B6Ng01-096L07.g_358_1077 (reverse)

seq1  TTCCCAGCACCCACATGGTGCTTACAGTCATGTGCAGTAGTAGTCTTATG  50
      |||||||||||||| ||| |||| |||||||| ||||| || ||||||||
seq2  TTCCCAGCACCCACTTGG-GCTT-CAGTCATGAGCAGTCGTGGTCTTATG  48

seq1  AGACCTGATCTCGTCTTTTGATGTATAAATATACATGAAGAGGAAATGGC  100
      |||| |||||| ||| ||||||||||||| |||| ||| ||| |||| | 
seq2  AGACATGATCT-GTC-TTTGATGTATAAA-ATACGTGACGAGTAAAT-GA  94

seq1  CACAGGCATTAAATGAATACATCTTTAAAAATGTATAGTACTATTTTTGA  150
      |||||||||| ||||| | |||| || ||||| ||||| |||| ||||||
seq2  CACAGGCATTGAATGAGT-CATC-TTCAAAATTTATAGGACTA-TTTTGA  141

seq1  GACTACGATAGCAGTGAAGGAGTTATTAGTATACAAGACTGACGACATTA  200
      || ||| | |||||||| |||| | || || ||||| | |||||||||||
seq2  GAGTAC-AAAGCAGTGACGGAG-TCTTTGTGTACAA-AGTGACGACATTA  188

seq1  GACGTACATTATATACTACTTGGCTTGATAGAGATAACAATTTCACAATA  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACGTACATTATATATTACTTGGCTTGATAGAGATAACAATTTCACAATA  238

seq1  CATACATGTAGTAATGTATTTTTTAAAAAACACTTCATTTTTGGAAGGAC  300
      |||||||||||||||||||||| || ||||||||||||||||||| ||||
seq2  CATACATGTAGTAATGTATTTTGTATAAAACACTTCATTTTTGGAGGGAC  288

seq1  TGCAATTTTCTCAGGTCTTGCAGCCATGTCTATATTTCTTGATAGTATTT  350
      |||||||||||| ||||| ||||||||||||||| |||||||||||||||
seq2  TGCAATTTTCTCGGGTCTAGCAGCCATGTCTATAGTTCTTGATAGTATTT  338

seq1  AAGGCTACATACTTAACCTGCTATTCTATTGTGTACTCAGCCTGTTTAAG  400
       |||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  TAGGCTACATACTTAACCTGCTATTCTATAGTGTACTCAGCCAGTTTAAG  388

seq1  TTAAATATGCTTCTAAGAAAGCAATGTAACCCACCTTACAATGTGTAGTA  450
      ||||||||||||  ||||||||||||||||||| ||  ||||||||||||
seq2  TTAAATATGCTTAGAAGAAAGCAATGTAACCCA-CTCTCAATGTGTAGTA  437

seq1  TTTCCTGTGTAATCAGCTTGTACAACCTAACTAAATATAGATTTTATGTT  500
      || | ||||||||||||||||||||| | |||||||||||||||||||||
seq2  TTGCATGTGTAATCAGCTTGTACAACTTTACTAAATATAGATTTTATGTT  487

seq1  CAGTTAAGTACTCGTCCATGCCATTGACCCAGATTAATGAATGTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGTACTCGTCCATGCCATTGACCCAGATTAATGAATGTATTTAT  537

seq1  GTTTATGTTGTGTTAAGCATTTGCTGATAATAACCAACAGGTTGAAAAAG  600
      |||||||||||||||||||  ||  |||||||||||||||| ||||||||
seq2  GTTTATGTTGTGTTAAGCAAGTGTGGATAATAACCAACAGGATGAAAAAG  587

seq1  CTTAAACAAAATATATATCCACTATTTTTTATGGCTACA-ATATGTTTTC  649
      ||||||||||||||||||||| ||||||||||||||| | | ||||||||
seq2  CTTAAACAAAATATATATCCAATATTTTTTATGGCTATATACATGTTTTC  637

seq1  CTTTCATCCTATATTTAAAAAAAAAGTTGATAACATCTTTTTGAAGTTGA  699
      |||||||||||| ||||||||||||||||||||||| |||||||||  ||
seq2  CTTTCATCCTAT-TTTAAAAAAAAAGTTGATAACATTTTTTTGAAGCCGA  686

seq1  GTGCTATAATCATTCAGTTGGTATGAGTCATGCC  733
      |||   || ||| |||| ||||||||||||||||
seq2  GTGAAGTACTCAGTCAGGTGGTATGAGTCATGCC  720