BAC Information

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BAC

Clone NameB6Ng01-096P04
Chromosome15 (Build37)
Map Location 52,617,441 - 52,618,600
singlet/doubletsinglet
Overlap genenone
Upstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6
Downstream geneLOC100039745, Ext1, Samd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P04.bB6Ng01-096P04.g
ACCDH907450DH907451
length1,2201,146
definitionDH907450|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P04, 5' end.DH907451|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcttatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaatttggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggctttataaaatgagttg
agtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattgataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgctttcttttttttctaga
gcttttagatgtgttgtcaagctgctagtatgtgctctctctcgtttctt
cttggaggcactcagagctatgagtttccctcttagaaatgctttcatgt
gtcccataaggtttgggtacgtgtgctcatttcataaactctaaaagtct
tatttctttcttaatctccttgacaggtatcatgaagaaagagtgtcagt
tcacgtgaatggtgggcttccattatttatgtggatggaggatcagcctt
agccatgtgcttggatgatacatggacaattcaattgaatcgtgtgtaga
ggcgccggttctgtgtagcc
gaattccacagtaactgtgattcagttaaaaaaaaaaagatagatcctaa
tcgctgcctcttctctcagggcttataagcaaaggcaaaggcaagatttc
tttgccagctttctcttggctcatacttcaaatctgtctcctaaggacca
aggatgactctagagttttattatttatgcacttgccacacaaaggccgc
atctaatgctcatacttcgcaacagaaatcatccgcaggcgtctttgctt
ctcgacagcgttgccataaggagtttcacagagagcagctcttacgaaga
ggctctgaaaagccagagagatggctcatggttcagacagcttgagagca
ttacaggctgtatccttttatccaagatttcagatgggtgacatcacaat
ttaaagtttggatctggaatgtcaccgaaacattcttgtgaattcaatgg
atttgcttcttagctggtggcatgtctgggtggaaactttcagagataag
gcctgtataggggaagtaagtcatggagagtgtgggctcatgtaaatctg
ttgttttcagccccctttttggactccctttccagctgtcttgagataag
caactctggtcttgatgactcgttccttgccatgatttactgccctgcct
cactccagacctaggaagagtaaaactaggtgatcatcagcttaagcctg
tgaaatcatgagccaaaaacaaacaaacaaacaaacaaataaacaaacaa
acaaaacctctcttcaagttaattttgttaacacccatagaaaatgaact
agttaatataaggttcttcaaaattctagagaaagccaatcctacagact
gtggcatgagttctttcagagggcatcagtagcagagtcagggaaagggg
ctggagaaatggctcagtgggtagagcactggctactcttctggagactc
aagctcaattcttagcaccatactgtcaggcacacgtttacactacagtt
tcagaatacccaacaccttcttttgctccactgccatgtatatacatgct
gaacagacaacatgcagtgatcctcccattccaataaaagaaaaataagt
tctaattttcttgaataggttaagtacaggcagctaccaaaagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_52617441_52618600
seq2: B6Ng01-096P04.g_69_1214

seq1  GAATTCCACAGTAACTGTGATTCAGTTAAAAAAAAAAAGATAGATCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTAACTGTGATTCAGTTAAAAAAAAAAAGATAGATCCTAA  50

seq1  TCGCTGCCTCTTCTCTCAGGGCTTATAAGCAAAGGCAAAGGCAAGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCCTCTTCTCTCAGGGCTTATAAGCAAAGGCAAAGGCAAGATTTC  100

seq1  TTTGCCAGCTTTCTCTTGGCTCATACTTCAAATCTGTCTCCTAAGGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGCTTTCTCTTGGCTCATACTTCAAATCTGTCTCCTAAGGACCA  150

seq1  AGGATGACTCTAGAGTTTTATTATTTATGCACTTGCCACACAAAGGCCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACTCTAGAGTTTTATTATTTATGCACTTGCCACACAAAGGCCGC  200

seq1  ATCTAATGCTCATACTTCGCAACAGAAATCATCCGCAGGCGTCTTTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGCTCATACTTCGCAACAGAAATCATCCGCAGGCGTCTTTGCTT  250

seq1  CTCGACAGCGTTGCCATAAGGAGTTTCACAGAGAGCAGCTCTTACGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACAGCGTTGCCATAAGGAGTTTCACAGAGAGCAGCTCTTACGAAGA  300

seq1  GGCTCTGAAAAGCCAGAGAGATGGCTCATGGTTCAGACAGCTTGAGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAAAAGCCAGAGAGATGGCTCATGGTTCAGACAGCTTGAGAGCA  350

seq1  TTACAGGCTGTATCCTTTTATCCAAGATTTCAGATGGGTGACATCACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGCTGTATCCTTTTATCCAAGATTTCAGATGGGTGACATCACAAT  400

seq1  TTAAAGTTTGGATCTGGAATGTCACCGAAACATTCTTGTGAATTCAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTGGATCTGGAATGTCACCGAAACATTCTTGTGAATTCAATGG  450

seq1  ATTTGCTTCTTAGCTGGTGGCATGTCTGGGTGGAAACTTTCAGAGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTCTTAGCTGGTGGCATGTCTGGGTGGAAACTTTCAGAGATAAG  500

seq1  GCCTGTATAGGGGAAGTAAGTCATGGAGAGTGTGGGCTCATGTAAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATAGGGGAAGTAAGTCATGGAGAGTGTGGGCTCATGTAAATCTG  550

seq1  TTGTTTTCAGCCCCCTTTTTGGACTCCCTTTCCAGCTGTCTTGAGATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAGCCCCCTTTTTGGACTCCCTTTCCAGCTGTCTTGAGATAAG  600

seq1  CAACTCTGGTCTTGATGACTCGTTCCTTGCCATGATTTACTGCCCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGGTCTTGATGACTCGTTCCTTGCCATGATTTACTGCCCTGCCT  650

seq1  CACTCCAGACCTAGGAAGAGTAAAACTAGGTGATCATCAGCTTAAGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGACCTAGGAAGAGTAAAACTAGGTGATCATCAGCTTAAGCCTG  700

seq1  TGAAATCATGAGCCAAAAACAAACAAACAAACAAACAAATAAACAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCATGAGCCAAAAACAAACAAACAAACAAACAAATAAACAAACAA  750

seq1  ACAAAACCTCTCTTCAAGTTAATTTTGTTAACACCCATAGAAAATGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCTCTCTTCAAGTTAATTTTGTTAACACCCATAGAAAATGAACT  800

seq1  AGTTAATATAAGGTTCTTCAAAATTCTAGAGAAAGCCAATCCTACAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATATAAGGTTCTTCAAAATTCTAGAGAAAGCCAATCCTACAGACT  850

seq1  GTGGCATGAGTTCTTTCAGAGGGCATCAGTAGCAGAGGTCAGGGGAAGGG  900
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  GTGGCATGAGTTCTTTCAGAGGGCATCAGTAGCAGA-GTCAGGGAAAGGG  899

seq1  GCTGGAGAAATGGCTCAGTGGGTAAGAGCACTGGCTACTCTTCTGGAAGA  950
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  GCTGGAGAAATGGCTCAGTGGGT-AGAGCACTGGCTACTCTTCTGG-AGA  947

seq1  CTCAGGCTCAATTCTTAGCACCAATACTGTCAGGCACAACGGTTTACAAC  1000
      |||| ||||||||||||||||| |||||||||||||||   |||||| ||
seq2  CTCAAGCTCAATTCTTAGCACC-ATACTGTCAGGCACA--CGTTTAC-AC  993

seq1  TACAGTTTCAGAATACCCAACACCTTCTTTTGGCTTCCACTGGCATTGTA  1050
      ||||||||||||||||||||||||||||||||   ||||||| || ||||
seq2  TACAGTTTCAGAATACCCAACACCTTCTTTTG--CTCCACTGCCA-TGTA  1040

seq1  TATACATGCTGAACAGACAAACATGCAGGTGAATCTCCCATTCACATAAA  1100
      |||||||||||||||||| |||||||| ||||  |||||||||  |||||
seq2  TATACATGCTGAACAGAC-AACATGCA-GTGATCCTCCCATTCCAATAAA  1088

seq1  AGAAAAAATAAG-TCT-ATTTTC-TGAATAGGTTAAAGTTACAAGGCAGC  1147
      || ||||||||| ||| |||||| ||||||||||||   ||| |||||||
seq2  AG-AAAAATAAGTTCTAATTTTCTTGAATAGGTTAA--GTAC-AGGCAGC  1134

seq1  TACCAAAAAGAAT  1160
      |||| ||||||||
seq2  TACC-AAAAGAAT  1146