BAC Information

Click to search

BAC

Clone NameB6Ng01-098A08
Chromosome1 (Build37)15 (Build37)
Map Location 182,542,214 - 182,542,89260,479,385 - 60,480,079
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1
Downstream geneLin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098A08.bB6Ng01-098A08.g
ACCDH908235DH908236
length1,008695
definitionDH908235|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A08, 5' end.DH908236|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(182,542,214 - 182,542,892)(60,479,385 - 60,480,079)
sequence
gaattcatgcagttgaatccttctcaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cggtcccgagttttcttgtattttttcgtcccggattttttctcgtcccg
ggtttcggcaccaattcttaatagcgttctcacgcccggccaggaagaac
accacagaccagaatcttctgcggcaaaactttattgcttacatcttcag
gagctaggagcgcaaacccccagccccaaaagcgaaagccacccctataa
tacatctttaggagccagagctccggcgcgccaaagcgcagagcgcgctc
tattgtttacatctttaggagcgagcgagcaggcgccagagccagagaga
gaaaagagagagaagagcgcaagtaagtgagaatggcggaaaccccgtcc
cctttaaggaggagttatcctttgcttaggacgcatcactccctgattgg
ctgcagcccatggccgagctgacgtttacgggaaaggcagagtacaagta
gtcgtaaaatacccttggcacatgcgcagattatttgtttaccacttaga
acacaggatgtcagcgccatcttgtgacggcgaatgtgggggcggctccc
aacatttaaccaccacataaaagaaacatatacaagtcctataacttgat
aaattttactgaactatactctttctccatttcctaggacagtcgttctc
aacaattggttcatgatcaagcaagattcatgttacctggaaatttgctg
gttagttcttgggcctagctcaaatctactaagtccttgaatttccaagt
ggcactcagctatctgatttaataagactccagagggtctcagagagctc
atgttgagaatccttattctaagagatttccttatggaattaagttaaac
agccatctaaatataggatacccagtaaaatatgaatttcaagttacagt
gtatctta
gaattcagaagcaccaaccacggctgagctatattgcacagccaccatgt
aacttgcatccattgagtttctcttgtacagccaccatgtaacttgcatc
cattgagttcctctggtgtctgtccagcgcctaccctgctggatgctgtc
cttcctagagctaattcagaacataaccccagcagagggaataaagacaa
gagagatgtctaatgaccccttaaagatttctttgcattaaagatttcga
ttcttttgaaattgtgagaatcccattgttcaactgaccctcacctctcc
gtgaagaatatgctcaaaatttaagtcattcttgaacttttgctttttat
attctaaatgttcatcacaagacattctttctctctctctctctctctct
ctctctctctctcttttttttggtaattgttaatagtagaaatcacttta
tatattttgtgattctcccttttcctctggcacagtgttatgccagaggc
agctcatctttgaactcaggaaagccaattgttgtgtgtttatagtaagg
ctcattttaagtgatttcagacactaaccttaattacaaaggtaatttat
attccaaactcttcgtttcctgatgtattgtattttattggtgtctgtac
tcttgctgtttgtgtgtatgatgactgtcatggtgggggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_182542214_182542892
seq2: B6Ng01-098A08.b_48_701 (reverse)

seq1  TGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCT  50

seq1  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTTA  100

seq1  TGACTACTTGTACTCTACCTTTCCCGTGAACGTCAGCTCGGCCATGGGCT  150
       ||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CGACTACTTGTACTCTGCCTTTCCCGTAAACGTCAGCTCGGCCATGGGCT  150

seq1  GCAGCCAATCAGGGAGTGATGCGTCCTAAGCGAAGAATAACTCCTCCTTA  200
      ||||||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  GCAGCCAATCAGGGAGTGATGCGTCCTAAGCAAAGGATAACTCCTCCTTA  200

seq1  AAGGGGACGGGGTTTTCCGCCATTCT--CTTA-------------CTCGC  235
      |||||||||||| |||||||||||||  ||||             ||| |
seq2  AAGGGGACGGGG-TTTCCGCCATTCTCACTTACTTGCGCTCTTCTCTCTC  249

seq1  TGGCATCTCTCTGGCTCTGCGCGCCCTGCGCTCTCTCGCTGCCTAAAGAT  285
      |    |||||||||||||| |||||    |||| |||||| |||||||||
seq2  TTTTCTCTCTCTGGCTCTG-GCGCC---TGCTCGCTCGCT-CCTAAAGAT  294

seq1  GTAAACAATAGAGCGCGCTCTGCACTTTGGCGCGCCGGAGCTCTGGCTCC  335
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTAAACAATAGAGCGCGCTCTGCGCTTTGGCGCGCCGGAGCTCTGGCTCC  344

seq1  TAAAGATGTA-TATAGAAGGGGCTTTCGTTTTTGGGGCTGGGCGCTGGGC  384
      |||||||||| |||||  | |||||||| |||||||       |||||| 
seq2  TAAAGATGTATTATAGGGGTGGCTTTCGCTTTTGGG-------GCTGGGG  387

seq1  GCTTGCCCTCCTGGCTCCCAAAGATGTAAGCAATAAAGTTTTGCCGCAGA  434
      | |||| ||||| |||||  ||||||||||||||||||||||||||||||
seq2  GTTTGCGCTCCTAGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGA  437

seq1  AGATTCTGGTCTGTTGCGTCTTTCCTGGCCGGGCGTGAGAACGCTATTAA  484
      |||||||||||||| | ||  |||||||||||||||||||||||||||||
seq2  AGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGGCGTGAGAACGCTATTAA  487

seq1  GAATTGGTGCCGAAACCCGGGACGAGAAATTCCGGGACGAGAAAAAATCC  534
      ||||||||||||||||               |||||||||||||||||||
seq2  GAATTGGTGCCGAAAC---------------CCGGGACGAGAAAAAATCC  522

seq1  GGGAAGAAAAAACCCGGGAGGAAACTCGGGACGGGAGTTTCACCGGCGCA  584
      |||| |||||||  |   || |||||||||           |||||||||
seq2  GGGACGAAAAAATAC--AAGAAAACTCGGG-----------ACCGGCGCA  559

seq1  AAGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAAGG  634
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAAGG  609

seq1  TTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGCATAAATTC  679
      |||||||||||||||||||| |||||||||||||||||| |||||
seq2  TTCCCGTAAAGCAGACTGTTGAGAAGGATTCAACTGCATGAATTC  654

seq1: chr15_60479385_60480079
seq2: B6Ng01-098A08.g_71_765

seq1  GAATTCAGAAGCACCAACCACGGCTGAGCTATATTGCACAGCCACCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGCACCAACCACGGCTGAGCTATATTGCACAGCCACCATGT  50

seq1  AACTTGCATCCATTGAGTTTCTCTTGTACAGCCACCATGTAACTTGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCATCCATTGAGTTTCTCTTGTACAGCCACCATGTAACTTGCATC  100

seq1  CATTGAGTTCCTCTGGTGTCTGTCCAGCGCCTACCCTGCTGGATGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTTCCTCTGGTGTCTGTCCAGCGCCTACCCTGCTGGATGCTGTC  150

seq1  CTTCCTAGAGCTAATTCAGAACATAACCCCAGCAGAGGGAATAAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGAGCTAATTCAGAACATAACCCCAGCAGAGGGAATAAAGACAA  200

seq1  GAGAGATGTCTAATGACCCCTTAAAGATTTCTTTGCATTAAAGATTTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGTCTAATGACCCCTTAAAGATTTCTTTGCATTAAAGATTTCGA  250

seq1  TTCTTTTGAAATTGTGAGAATCCCATTGTTCAACTGACCCTCACCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAAATTGTGAGAATCCCATTGTTCAACTGACCCTCACCTCTCC  300

seq1  GTGAAGAATATGCTCAAAATTTAAGTCATTCTTGAACTTTTGCTTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAATATGCTCAAAATTTAAGTCATTCTTGAACTTTTGCTTTTTAT  350

seq1  ATTCTAAATGTTCATCACAAGACATTCTTTCTCTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATGTTCATCACAAGACATTCTTTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCTTTTTTTTGGTAATTGTTAATAGTAGAAATCACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTTTTTTTTGGTAATTGTTAATAGTAGAAATCACTTTA  450

seq1  TATATTTTGTGATTCTCCCTTTTCCTCTGGCACAGTGTTATGCCAGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGTGATTCTCCCTTTTCCTCTGGCACAGTGTTATGCCAGAGGC  500

seq1  AGCTCATCTTTGAACTCAGGAAAGCCAATTGTTGTGTGTTTATAGTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCTTTGAACTCAGGAAAGCCAATTGTTGTGTGTTTATAGTAAGG  550

seq1  CTCATTTTAAGTGATTTCAGACACTAACCTTAATTACAAAGGTAATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTAAGTGATTTCAGACACTAACCTTAATTACAAAGGTAATTTAT  600

seq1  ATTCCAAACTCTTCGTTTCCTGATGTATTGTATTTTATTGGTGTCTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAACTCTTCGTTTCCTGATGTATTGTATTTTATTGGTGTCTGTAC  650

seq1  TCTTGCTGTTTGTGTGTATGATGACTGTCATGGTGGGGGAGGGGG  695
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGTTTGTGTGTATGATGACTGTCATGGTGGGGGAGGGGG  695