BAC Information

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BAC

Clone NameB6Ng01-098D10
Chromosome15 (Build37)
Map Location 72,005,875 - 72,007,063
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098D10.bB6Ng01-098D10.g
ACCDH908367DH908368
length1,1751,229
definitionDH908367|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D10, 5' end.DH908368|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaagtagatttcctatcaaatgaatctagactatgctctcttc
ttgtgagcatggctgggtgatagctattgataaagaaggcttttatgaaa
caggtattggaactccctagaagctctgaagtccaatttccagccaaaga
aagtaaactggagtcttaaagctaaatctattccttaagacacaggaaaa
tggtacaataatgaaaacctctattgcaaaagagtttaacagagtgggct
gggatgcttatgccttatgtcttgtcccagatgatacactgtgttcagaa
cacaaacacataccctttctgacaatttttaatgtagcccatcatccagg
tcttgtttgtcacctgagtgtatgttaaataattcaagagggctgctgag
tgtatactctaaatttagaaatttccatgtttgcagaagcttctgacagc
aaagttcctggcaagccatgtagagaggtagctctagattctaacacaca
tacatacagctcatggctatgtggacagttacagaaagataaaaacctta
ggtataattgaatcttgtgatttgcaatcttcaacataaaccatacataa
gttgaagcactgtgactcatgggaatcctataggttacacagatctccag
ttctgactacatagggcttgctgttctctcatctttcacccctaaaattt
gtctggatgccataagtaacctctggattgacaggagttggttttagtgg
actctcaaaaaagagcttggcccctttggagaagagacctgctactgatg
agcacgggacaaggtcagtaacttggcagctttcctggatctcacttgct
tatcctgtgaataaaggaaagtaaatttaataatgtaagttggccagcgc
cccactaaaatggcatatagacatcaggaactcagtattagaatttaagt
tagcttgactttttagttatcacttttctgttgctgtgataaaaaccatg
tccaaggcaacttacggaggttgatgtgggcttacactccagaaaagcta
agagtcatcatgtcaggagcattgggagcgacataagcgcctgtaaaggc
tgaagctcacatctggaaatatgaagctagactactagaccgtggtgctc
ggtttaaattccaaggctgcctcta
gaattcactaacaacagaaacaacagaaagcctacaaactcgtggacact
gaacaactccctactcaatgaccactgggtcagggaagaaataaagaaag
aaattaaagactttctagaattcaatgaaaatgaagacacaacatagtca
aacttatgggacacaatgaaaacactgctaagaggaaagttcatgactta
agtgtcttcataaagaaatcagtgggacctcatactagcaacttaaaacc
acaccagaaagttctagaataaaaataatcaaatacacccaagagtagta
gatggctggaaataatcaaactaggggcagaaataaaaaaattagaaaca
aaaagacaatacaaagaacaaaatcaagagctggttctttgagaaaacaa
gattcacaaacccttagtcaaactaactaaaagggagagaggcagtatct
aaatggacaaaaccagaaatgaaaagaggaatataataaacactgaggaa
gtccaaagaatcattaggtcttactccaaaagtctgtattccacaaaatt
gggaaatctaaacaaaatgggctattttcttgatagataccattttacaa
agtaaaaccaagatcaggtaaacaatttaaacaatcctcgaacacaaaag
aaatagaaagggtcattaaaattctcccaaccacaaaaggctagtgtcag
atggttttagcacaaaattctaccagactttcaaagaaaagctaatacta
atactcttcaaattatctcacaaaatagaaatagcagaacattgacaaac
tcattctatgagggcacagtcaccctgatacctaaaccacacaaagtctc
aataaagaaagaaaattgcagaccaatcccccttatgaacattaataaaa
aaatactcaataaatactcacaaaccaaatccaagaacacatcaaaaaca
ttatccaccatggtcaagtaggattcatcccagggtgcagagatggttca
ttatatgcaaatcaatcaatttatcatccctgatgttaaaatctggagaa
gattagtatatacagcacagtaaggcaatatacagcagccaatagtcatc
atcaatggagagaactagcaatgccctaaatcaagacaagaactagctgt
tccctctctctggatcatacatatactggagtccagctagacatggaaca
ttaaagcgatacatgaggatacacaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_72005875_72007063
seq2: B6Ng01-098D10.b_46_1220

seq1  GAATTCTGAAGTAGATTTCCTATCAAATGAATCTAGACTATGCTCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGTAGATTTCCTATCAAATGAATCTAGACTATGCTCTCTTC  50

seq1  TTGTGAGCATGGCTGGGTGATAGCTATTGATAAAGAAGGCTTTTATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCATGGCTGGGTGATAGCTATTGATAAAGAAGGCTTTTATGAAA  100

seq1  CAGGTATTGGAACTCCCTAGAAGCTCTGAAGTCCAATTTCCAGCCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTGGAACTCCCTAGAAGCTCTGAAGTCCAATTTCCAGCCAAAGA  150

seq1  AAGTAAACTGGAGTCTTAAAGCTAAATCTATTCCTTAAGACACAGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACTGGAGTCTTAAAGCTAAATCTATTCCTTAAGACACAGGAAAA  200

seq1  TGGTACAATAATGAAAACCTCTATTGCAAAAGAGTTTAACAGAGTGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAATAATGAAAACCTCTATTGCAAAAGAGTTTAACAGAGTGGGCT  250

seq1  GGGATGCTTATGCCTTATGTCTTGTCCCAGATGATACACTGTGTTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTTATGCCTTATGTCTTGTCCCAGATGATACACTGTGTTCAGAA  300

seq1  CACAAACACATACCCTTTCTGACAATTTTTAATGTAGCCCATCATCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACATACCCTTTCTGACAATTTTTAATGTAGCCCATCATCCAGG  350

seq1  TCTTGTTTGTCACCTGAGTGTATGTTAAATAATTCAAGAGGGCTGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTGTCACCTGAGTGTATGTTAAATAATTCAAGAGGGCTGCTGAG  400

seq1  TGTATACTCTAAATTTAGAAATTTCCATGTTTGCAGAAGCTTCTGACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTCTAAATTTAGAAATTTCCATGTTTGCAGAAGCTTCTGACAGC  450

seq1  AAAGTTCCTGGCAAGCCATGTAGAGAGGTAGCTCTAGATTCTAACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCTGGCAAGCCATGTAGAGAGGTAGCTCTAGATTCTAACACACA  500

seq1  TACATACAGCTCATGGCTATGTGGACAGTTACAGAAAGATAAAAACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACAGCTCATGGCTATGTGGACAGTTACAGAAAGATAAAAACCTTA  550

seq1  GGTATAATTGAATCTTGTGATTTGCAATCTTCAACATAAACCATACATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATTGAATCTTGTGATTTGCAATCTTCAACATAAACCATACATAA  600

seq1  GTTGAAGCACTGTGACTCATGGGAATCCTATAGGTTACACAGATCTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGCACTGTGACTCATGGGAATCCTATAGGTTACACAGATCTCCAG  650

seq1  TTCTGACTACATAGGGCTTGCTGTTCTCTCATCTTTCACCCCTAAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTACATAGGGCTTGCTGTTCTCTCATCTTTCACCCCTAAAATTT  700

seq1  GTCTGGATGCCATAAGTAACCTCTGGATTGACAGGAGTTGGTTTTAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATGCCATAAGTAACCTCTGGATTGACAGGAGTTGGTTTTAGTGG  750

seq1  ACTCTCAAAAAAGAGCTTGGCCCCTTTGGAGAAGAGACCTGCTACTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAAAAAAGAGCTTGGCCCCTTTGGAGAAGAGACCTGCTACTGATG  800

seq1  AGCACGGGACAAGGTCAGTAACTTGGCAGCTTTCCTGGATCTCACTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGGACAAGGTCAGTAACTTGGCAGCTTTCCTGGATCTCACTTGCT  850

seq1  TATCCTGTGAATAAAGGAAAGTAAATTTAATAATGTAAGTTTGGCCAGCG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCCTGTGAATAAAGGAAAGTAAATTTAATAATGTAAG-TTGGCCAGCG  899

seq1  CCCCACTAAAATGGCATATAGACATCAGGAACTCAGTATTAGGAATTTAA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCCACTAAAATGGCATATAGACATCAGGAACTCAGTATTA-GAATTTAA  948

seq1  GTTAGCTTGACTTTTTTAGTTATCACTTTTCTGTTGCTGTGATAAAAACC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTGAC-TTTTTAGTTATCACTTTTCTGTTGCTGTGATAAAAACC  997

seq1  ATGTCCAAGGCAACTTACGGGAGGGTTGATGTGGGCTTACAACTCCAG-A  1049
      ||||||||||||||||||||   ||||||||||||||||| ||||||| |
seq2  ATGTCCAAGGCAACTTACGG--AGGTTGATGTGGGCTTAC-ACTCCAGAA  1044

seq1  GAGCTAAGAGTCCATCATGTCCAGGAAGCA-TGGGAGCAGACAT-AGCGG  1097
       |||||||||| |||||||| |||| |||| ||||||| ||||| |||| 
seq2  AAGCTAAGAGT-CATCATGT-CAGG-AGCATTGGGAGC-GACATAAGCGC  1090

seq1  CTGTAGAGGCTGAAGGCTCACATCTTGAAATATGAAGCATAGATCTAACT  1147
      ||||| |||||||| |||||||||| |||||||||||| |||| || |||
seq2  CTGTAAAGGCTGAA-GCTCACATCTGGAAATATGAAGC-TAGA-CT-ACT  1136

seq1  AGA-CGTGGTGCTCGTGTTTAAATTCTCAAAAGCCTGCCTCTA  1189
      ||| ||||||||||| ||||||||||    ||| |||||||||
seq2  AGACCGTGGTGCTCG-GTTTAAATTC---CAAGGCTGCCTCTA  1175