BAC Information

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BAC

Clone NameB6Ng01-098F06
Chromosome9 (Build37)15 (Build37)
Map Location 83,952,511 - 83,953,62632,715,211 - 32,715,737
singlet/doubletsingletsinglet
Overlap geneBckdhb
Upstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150
Downstream geneEG666669, LOC666672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098F06.bB6Ng01-098F06.g
ACCDH908452DH908453
length1,1031,026
definitionDH908452|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F06, 5' end.DH908453|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,952,511 - 83,953,626)(32,715,211 - 32,715,737)
sequence
gaattcactctgtagaccaggctggtctcgaactcagaaatccacctgcc
tctgcctccggagtgctgggattaaaggcgtgcgccaccacagcctggcc
taactctttctattctgactcttcccaaagtcgttgtttatttttcctcc
cagttgtgatgactcttagtttgtgtacatatattctttcaatacaacac
cactgttgtaagaggttctggggtaggcgagtgtcatgatgtcgggatga
caggaatggagaatgccaggtaccaccaagaccctcacctgcccatgctc
tgggcaaccttttcatgtcaatccctgagcctagggggtctgtctgctct
gtgcactgtctggaagcacagtagttaagacggtggaaacagtccacttc
ttcaaaatctaaaactaagggagaggcatgaatagaagttttgttttctt
ctttatagatatcttggtctttccttggcttatggttgtacctgaatata
tcctaacttcatttctgctgttggtataaaataccttgaggagaataact
tagggagaaaaaatatcttctagttcctaattctaggttacagatcatcc
tcgtggcaagttatatcagcatgaacttgaagcagcaagttacatccata
gccaagatgatacttgtgttcaacttattttctcttttttatatagtcaa
ggacccaaacccagggaataacgatacctacctttttagtctgaatcatt
ttacatcagctaatgtaagcaaggcaatcgtttacagacatccatccact
ggacaacacttgcctaatctagacttcattaagactctcttgtcaggagt
caagatggtatcaagttgacattttaagggaaccatcttactgaggaaat
gcgtttctacatttatcttacactttagtgttataaatgtaacttaagtt
tataagtagttttgaggattttgtcctctaaaaggaatttaggctttcta
agtggtgtaaagaatttttcctgggagacacaaccacatgtgtactcact
ttagatagtgactacggcgacctagtcgataccaccaatacagcttgtga
ccc
gaattcagaacttttcagctggggaacgagagtaccagtgagtatagctt
tacgaggtaagcctggccttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctaatgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctggatgaaattcagggcaatctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagtttaggtcaggtaagaatacctggg
gagagattagaaggaaggaaaagaaaaaagaaaagaaaaaagatcgatta
gcggaggtctctaggagatactcgtcactagatgagctcagggagccagc
tcttagtagctctgaagcagatgatgaattctcctctgaagaaacagact
gggaggaagaagcagctcattatgagaaaaaagggtaccagccaggtaaa
gtgctagctaatcagttaaggaagccaaaagcggctggcgaaggccagtt
tgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggagc
ccccgccctgcgtagtgcgtcagccctgcgcagagagacaatgcgcagag
aggcagtgcgcagactcattcattcccagagaggaacaaaggaaaataca
acaggcatttccagtctttgaaggagccgagggtgggcgtgtccacgctc
cggtagaatacttacaaattaaagagcttgccgagtcggtccgtaaatat
ggaaccaatgctaattttaccttggtgcagttagacaggcttgccggcat
ggcactaactcctgccgactggcaaacggttgtaaaagccgctctcccta
gtatgggcaatattttggaatggaggagctctttggcatgaaactgcaca
agcgcagcccgagcaaacgcagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_83952511_83953626
seq2: B6Ng01-098F06.b_47_1149

seq1  GAATTCACTCTGTAGACCAGGCTGGTCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGTCTCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGCGCCACCACAGCCTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGCGCCACCACAGCCTGGCC  100

seq1  TAACTCTTTCTATTCTGACTCTTCCCAAAGTCGTTGTTTATTTTTCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTCTATTCTGACTCTTCCCAAAGTCGTTGTTTATTTTTCCTCC  150

seq1  CAGTTGTGATGACTCTTAGTTTGTGTACATATATTCTTTCAATACAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGATGACTCTTAGTTTGTGTACATATATTCTTTCAATACAACAC  200

seq1  CACTGTTGTAAGAGGTTCTGGGGTAGGCGAGTGTCATGATGTCGGGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGTAAGAGGTTCTGGGGTAGGCGAGTGTCATGATGTCGGGATGA  250

seq1  CAGGAATGGAGAATGCCAGGTACCACCAAGACCCTCACCTGCCCATGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGGAGAATGCCAGGTACCACCAAGACCCTCACCTGCCCATGCTC  300

seq1  TGGGCAACCTTTTCATGTCAATCCCTGAGCCTAGGGGGTCTGTCTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAACCTTTTCATGTCAATCCCTGAGCCTAGGGGGTCTGTCTGCTCT  350

seq1  GTGCACTGTCTGGAAGCACAGTAGTTAAGACGGTGGAAACAGTCCACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGTCTGGAAGCACAGTAGTTAAGACGGTGGAAACAGTCCACTTC  400

seq1  TTCAAAATCTAAAACTAAGGGAGAGGCATGAATAGAAGTTTTGTTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATCTAAAACTAAGGGAGAGGCATGAATAGAAGTTTTGTTTTCTT  450

seq1  CTTTATAGATATCTTGGTCTTTCCTTGGCTTATGGTTGTACCTGAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGATATCTTGGTCTTTCCTTGGCTTATGGTTGTACCTGAATATA  500

seq1  TCCTAACTTCATTTCTGCTGTTGGTATAAAATACCTTGAGGAGAATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTTCATTTCTGCTGTTGGTATAAAATACCTTGAGGAGAATAACT  550

seq1  TAGGGAGAAAAAATATCTTCTAGTTCCTAATTCTAGGTTACAGATCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAAAAAATATCTTCTAGTTCCTAATTCTAGGTTACAGATCATCC  600

seq1  TCGTGGCAAGTTATATCAGCATGAACTTGAAGCAGCAAGTTACATCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGCAAGTTATATCAGCATGAACTTGAAGCAGCAAGTTACATCCATA  650

seq1  GCCAAGATGATACTTGTGTTCAACTTATTTTCTCTTTTTTATATAGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATGATACTTGTGTTCAACTTATTTTCTCTTTTTTATATAGTCAA  700

seq1  GGACCCAAACCCAGGGAATAACGATACCTACC-TTTTAGTCTGAATCATT  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGACCCAAACCCAGGGAATAACGATACCTACCTTTTTAGTCTGAATCATT  750

seq1  TTACATCAGCTAATGTAAGCAAGGCAATCGTTAACAGACATCCATCCACT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTACATCAGCTAATGTAAGCAAGGCAATCGTTTACAGACATCCATCCACT  800

seq1  GGACAACACTTGCCTAATCTAGACTTCATTAAGACTCTCTTGTCAGGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACACTTGCCTAATCTAGACTTCATTAAGACTCTCTTGTCAGGAGT  850

seq1  CAAGATGGTATCAAGTTGACATTTAAAGGGAACCATCTTACTGAGGAAAT  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAAGATGGTATCAAGTTGACATTTTAAGGGAACCATCTTACTGAGGAAAT  900

seq1  GGCGTTTCTACATTTATCTTACACTTTAGTGTTATAAATGTAACTTAAGT  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GCGTTTCTACATTTATCTTACACTTTAGTGTTATAAATGTAACTTAAGT  949

seq1  TTATAAAGTAGTTTTGAGAATTTTGT-CTCTAAAAGGAATTTAGGCTTTC  998
      |||| ||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TTAT-AAGTAGTTTTGAGGATTTTGTCCTCTAAAAGGAATTTAGGCTTTC  998

seq1  TTAAGGTGTGTGACAGAATTTTTCCTGGGAAGACACAACACACATGTGTA  1048
       ||||  |||| | ||||||||||||||| ||||||||| ||||||||||
seq2  -TAAGTGGTGT-AAAGAATTTTTCCTGGG-AGACACAAC-CACATGTGTA  1044

seq1  CTCACTTTAGATAGGGAACCCACGGCAGACCTAAGTACGGATACCACCAA  1098
      |||||||||||||| ||  | ||||| ||||| |||   |||||||||||
seq2  CTCACTTTAGATAGTGA--CTACGGC-GACCT-AGT--CGATACCACCAA  1088

seq1  AGTACAGCTTGGTGACCC  1116
        |||||||| |||||||
seq2  --TACAGCTT-GTGACCC  1103

seq1: chr15_32715211_32715737
seq2: B6Ng01-098F06.g_68_499 (reverse)

seq1  TCTAGTGATGAGTATAGGCTCCTTCTCCTAGAGACCTCCGCTAATTGA--  48
      |||||||| |||||         |||||||||||||||||||||| ||  
seq2  TCTAGTGACGAGTA---------TCTCCTAGAGACCTCCGCTAATCGATC  41

seq1  ----------TCTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTAT  88
                ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTCTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTAT  91

seq1  TCTTACCTGACCTAAACTTTTCCTCAGGTTCAAGACCCGTGGAAAGGCCT  138
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  TCTTACCTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCT  141

seq1  ATATACTTATTTTGTGTACAATATTTCCTCTTTGCTCCTACTCTCTCTCC  188
       |||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  GTATACTTATTTTGTGTACCATATTTTCTCTTTGCTCCTACTCTCTCTCC  191

seq1  CCGCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCC  238
      |||||||||||||||||||||||||||||||||||||||||   || |||
seq2  CCGCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGAA---TCCGCC  238

seq1  CTGCCTTAACCGCTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAAC  288
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  CTGCCTTAACCACTTGATAACATGTGAAAAGGAACAAAAGGGCTTCTAAC  288

seq1  ACTAGAAAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTT  338
      | |||||||| |||||||||||||               |||| ||||||
seq2  ATTAGAAAAAATTCAAGGCCAAAC---------------ATTTTCCACTT  323

seq1  TACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACT  388
      ||||||||||||||||||||||||||| |||||||||||||| |||| ||
seq2  TACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGGCCAGGCT  373

seq1  TACCTTGTAAAGCTATACTTACGGGTACCCT-GTTCCCCAGCTGAAGAGT  437
      ||||| ||||||||||||| || ||||| || |||||||||||||| |||
seq2  TACCTCGTAAAGCTATACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGT  423

seq1  TCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTGTTACGGGAACA  487
      |||||||||                                         
seq2  TCTGAATTC-----------------------------------------  432

seq1  CTTCATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTC  527
                                              
seq2  ----------------------------------------  432