BAC Information

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BAC

Clone NameB6Ng01-099L06
Chromosome15 (Build37)
Map Location 98,839,578 - 99,017,257
singlet/doubletdoublet
Overlap geneTuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2
Upstream geneSenp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092
Downstream geneKcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L06.bB6Ng01-099L06.g
ACCDH909424DH909425
length1,145289
definitionDH909424|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L06, 5' end.DH909425|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,016,078 - 99,017,257)(98,839,578 - 98,839,866)
sequence
gaattcctggaatctcctgaccttggtgtatggcagggcaagcaggaggc
ccgttccaccagtggaagaggacctggacacacgcaccacggcgcacaca
cacttaccttaaagcacaagtgtgtacacacacattttaaagcacaagtg
tgtacacacacattttcaaacctctctaccgaacttgctcgtgtcctcac
agaatacaaactagtgcctttaggaagcgagtacagaaggacgggggaca
caacgtcaacagccatcatcagcaggggaagagggaaggaaggtgacagg
ctaagagtaggcactctctccttaggctttggttggttggtttgttttaa
aataagatctctggtagccaggctggcctagatcctcctgcctcagcctc
cctggtgctctgattcccaaatgattgacacagctggctttttcctgtcc
agcttggttgtagcagtgtgtcacttgccacagggttggtttctgacgga
caggccctttttctacaatcacttgtcctctgcggagcactgtgagttct
ctgtgcctctcaatcccacactggccaagagcaactgaacgaagcagagt
tacacacagcacaggcgtctccgcttctccccgccttgtagttaggaagg
gatcaaagacaccagtgagtggctggccgtatttataaatggactctggg
ctaacgatgtaggaaaagcaacttaatcttaccagctttgcaattcggca
aacgcttgtttcattttcttaatggacgcatccatctcttctttaacgac
aactcggtaccgtgcaagagaaacagtgcagcgctggaggtctttcaccg
atttctcaatattagaaccttggagggaaacaaagattattttttcaagg
aacatgcaaattagcatgcatctgaatgcttcaggtcaaaggtcacatgg
atcaagactgtaaccaaatgaccacccatcccacacacacacacacacaa
aacaacacaacacactaccaatgaccccatccaacacacacaacacacaa
aacacacacacacacactctttacttttcaatttcatgtctgtttttaag
tgtcctaatccaaatgaggtaacaagaaattgggctcttcctctc
agatatttgtgcttggcaacaagcaagggaaaattctttagagatgacct
ttccctcgaccttcagcttgttctataatagggctttgagagtttgtgac
tattctctgaaaagtataaagaagattgatgttttgtttttgtaagattt
atttattttatgtatgtgagtacactgtagctatcttcagacacaccaga
ggagggcaccagaccccattacagatgtttgtgagccaccatgtggttgc
tgggaattgcactcatgacctctggaagagcagtcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99016078_99017257
seq2: B6Ng01-099L06.b_48_1192 (reverse)

seq1  GAGAGGATAGA-CCCAA-TTCTTGTTACCTCATTTTGATTAGGACACTTT  48
      ||||||| ||| ||||| ||||||||||||||||| ||||||||||||| 
seq2  GAGAGGA-AGAGCCCAATTTCTTGTTACCTCATTTGGATTAGGACACTT-  48

seq1  AAAAAACAGACATGAAAATTTGAAAAGTAGAGAGTTGTTGTTGTTGTTGT  98
       ||||||||||||||||  |||||||||| ||||             |||
seq2  -AAAAACAGACATGAAA--TTGAAAAGTAAAGAG-------------TGT  82

seq1  TGTTGTTTTTGTTGTTGT-TGTTGTTGTTGTTGGGATGGGTGTTCATTTG  147
         ||| | |||| |||| ||||||   |||| ||||||  | ||| |||
seq2  GTGTGTGTGTGTT-TTGTGTGTTGTGTGTGTT-GGATGG--GGTCA-TTG  127

seq1  GTTATGTTGTTGTTGTTGTTGTTTTTGTTGTTGTTGTTGTTGTTGTTGTT  197
      ||  ||    ||||| |||||||       ||||   |||   |||   |
seq2  GTAGTG----TGTTG-TGTTGTT-------TTGT--GTGTGTGTGTGTGT  163

seq1  GGGATGGGTGGTCATTTGGTTACAGTCTTGATCCATGTGACCTTTGACCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGTGGTCATTTGGTTACAGTCTTGATCCATGTGACCTTTGACCT  213

seq1  GAAGCATTCAGATGCATGCTAATTTGCATGTTCCTTTGAAAAAATAATCT  297
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAGCATTCAGATGCATGCTAATTTGCATGTTCC-TTGAAAAAATAATCT  262

seq1  TTGTTTCCCTCCAAGGTTCTAATATTGAGAAATCGGTGAAAGACCTCCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCCTCCAAGGTTCTAATATTGAGAAATCGGTGAAAGACCTCCAG  312

seq1  CGCTGCACTGTTTCTCTTGCACGGTACCGAGTTGTCGTTAAAGAAGAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCACTGTTTCTCTTGCACGGTACCGAGTTGTCGTTAAAGAAGAGAT  362

seq1  GGATGCGTCCATTAAGAAAATGAAACAAGCGTTTGCCGAATTGCAAAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCGTCCATTAAGAAAATGAAACAAGCGTTTGCCGAATTGCAAAGCT  412

seq1  GGTAAGATTAAGTTGCTTTTCCTACATCGTTAGCCCAGAGTCCATTTATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATTAAGTTGCTTTTCCTACATCGTTAGCCCAGAGTCCATTTATA  462

seq1  AATACGGCCAGCCACTCACTGGTGTCTTTGATCCCTTCCTAACTACAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGGCCAGCCACTCACTGGTGTCTTTGATCCCTTCCTAACTACAAGG  512

seq1  CGGGGAGAAGCGGAGACGCCTGTGCTGTGTGTAACTCTGCTTCGTTCAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGAAGCGGAGACGCCTGTGCTGTGTGTAACTCTGCTTCGTTCAGT  562

seq1  TGCTCTTGGCCAGTGTGGGATTGAGAGGCACAGAGAACTCACAGTGCTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGGCCAGTGTGGGATTGAGAGGCACAGAGAACTCACAGTGCTCC  612

seq1  GCAGAGGACAAGTGATTGTAGAAAAAGGGCCTGTCCGTCAGAAACCAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGACAAGTGATTGTAGAAAAAGGGCCTGTCCGTCAGAAACCAACC  662

seq1  CTGTGGCAAGTGACACACTGCTACAACCAAGCTGGACAGGAAAAAGCCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCAAGTGACACACTGCTACAACCAAGCTGGACAGGAAAAAGCCAG  712

seq1  CTGTGTCAATCATTTGGGAATCAGAGCACCAGGGAGGCTGAGGCAGGAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCAATCATTTGGGAATCAGAGCACCAGGGAGGCTGAGGCAGGAGG  762

seq1  ATCTAGGCCAGCCTGGCTACCAGAGATCTTATTTTAAAACAAACCAACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGCCAGCCTGGCTACCAGAGATCTTATTTTAAAACAAACCAACCA  812

seq1  ACCAAAGCCTAAGGAGAGAGTGCCTACTCTTAGCCTGTCACCTTCCTTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCCTAAGGAGAGAGTGCCTACTCTTAGCCTGTCACCTTCCTTCC  862

seq1  CTCTTCCCCTGCTGATGATGGCTGTTGACGTTGTGTCCCCCGTCCTTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCCTGCTGATGATGGCTGTTGACGTTGTGTCCCCCGTCCTTCTG  912

seq1  TACTCGCTTCCTAAAGGCACTAGTTTGTATTCTGTGAGGACACGAGCAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGCTTCCTAAAGGCACTAGTTTGTATTCTGTGAGGACACGAGCAAG  962

seq1  TTCGGTAGAGAGGTTTGAAAATGTGTGTGTACACACTTGTGCTTTAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTAGAGAGGTTTGAAAATGTGTGTGTACACACTTGTGCTTTAAAAT  1012

seq1  GTGTGTGTACACACTTGTGCTTTAAGGTAAGTGTGTGTGCGCCGTGGTGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTACACACTTGTGCTTTAAGGTAAGTGTGTGTGCGCCGTGGTGC  1062

seq1  GTGTGTCCAGGTCCTCTTCCACTGGTGGAACGGGCCTCCTGCTTGCCCTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCAGGTCCTCTTCCACTGGTGGAACGGGCCTCCTGCTTGCCCTG  1112

seq1  CCATACACCAAGGTCAGGAGATTCCAGGAATTC  1180
      |||||||||||||||||||||||||||||||||
seq2  CCATACACCAAGGTCAGGAGATTCCAGGAATTC  1145

seq1: chr15_98839578_98839866
seq2: B6Ng01-099L06.g_74_362

seq1  AGATATTTGTGCTTGGCAACAAGCAAGGGAAAATTCTTTAGAGATGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTGTGCTTGGCAACAAGCAAGGGAAAATTCTTTAGAGATGACCT  50

seq1  TTCCCTCGACCTTCAGCTTGTTCTATAATAGGGCTTTGAGAGTTTGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCGACCTTCAGCTTGTTCTATAATAGGGCTTTGAGAGTTTGTGAC  100

seq1  TATTCTCTGAAAAGTATAAAGAAGATTGATGTTTTGTTTTTGTAAGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTGAAAAGTATAAAGAAGATTGATGTTTTGTTTTTGTAAGATTT  150

seq1  ATTTATTTTATGTATGTGAGTACACTGTAGCTATCTTCAGACACACCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTATGTATGTGAGTACACTGTAGCTATCTTCAGACACACCAGA  200

seq1  GGAGGGCACCAGACCCCATTACAGATGTTTGTGAGCCACCATGTGGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCACCAGACCCCATTACAGATGTTTGTGAGCCACCATGTGGTTGC  250

seq1  TGGGAATTGCACTCAGGACCTCTGGAAGAGCAGTCAGTG  289
      ||||||||||||||| |||||||||||||||||||| ||
seq2  TGGGAATTGCACTCATGACCTCTGGAAGAGCAGTCATTG  289