BAC Information

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BAC

Clone NameB6Ng01-099L17
Chromosome15 (Build37)
Map Location 100,288,881 - 100,412,765
singlet/doubletdoublet
Overlap geneLetmd1, BC035295, Tcfcp2, Pou6f1
Upstream gene4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneDazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L17.bB6Ng01-099L17.g
ACCDH909444DH909445
length467564
definitionDH909444|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L17, 5' end.DH909445|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,288,881 - 100,289,353)(100,412,196 - 100,412,765)
sequence
actctgtagaccaggctggcctctaactcagaaatccgcctgcctctgcc
tcccaagtgctgggattaaaggcctgtgccaccactgcccgccccaccct
gggatttttactgagtgttagagatctgaattcagttctgcacacttgcc
caagaaacaaccaactaaataaacttgctagccttccattatctttaagc
attctcagtgctttaacttattattttgtgtgcacggatgttttgtgtgt
ctgtgtagcgtgtgcatgcagggtctgtggaggctgatagagggcgttgg
gttccatggaattggagttgcagacagctgtgagctgccatgtggttgct
gggaactgaacttgggtcctctggaagaacagccagtgttcctaacctct
gagccatctctctaaaattatttgttattgtgattgtgtttgtgtgtgtg
tgcatataagtgcatgg
caggacagccaaggctacacagagataagggttatagaagttcctactaa
agtagcagatgtctgtaatctcagcctgggctacatagggagttcaattc
cagcctgggttatgggatcctgtcagaaaacagcaacaaaacccctaatt
tagaagtgtatgaatgttacaccatggagctgacacgtgggtatacagtt
agtgtgtgatggtagttagttctgtgctgtcttaggggagctgctggggt
ctccatggctggtaggtgtgtgtatcttgggaagccctgacgtggtggaa
tcaaggactcgtgtctggttaagtcgtcagcttaagttttcccttttttt
tcctctgccatctggggtctcagacatgtatagggtaccatcgctgtgct
attccttcagctttggaagttctagagaaagaccaaggccaatggtctgg
ggaccaaggcgggggggggggcaggtctgagagccagcaggaggcagaat
ccagggaagagaaaaatccagggaaactcggggagggcagagggtgagga
ctatgaggagggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100288881_100289353
seq2: B6Ng01-099L17.b_47_519

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCTAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGTGCCACCACTGCCCGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGTGCCACCACTGCCCGCCC  100

seq1  CACCCTGGGATTTTTACTGAGTGTTAGAGATCTGAATTCAGTTCTGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGGATTTTTACTGAGTGTTAGAGATCTGAATTCAGTTCTGCACA  150

seq1  CTTGCCCAAGAAACAACCAACTAAATAAACTTGCTAGCCTTCCATTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCAAGAAACAACCAACTAAATAAACTTGCTAGCCTTCCATTATCT  200

seq1  TTAAGCATTCTCAGTGCTTTAACTTATTATTTTGTGTGCACGGATGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATTCTCAGTGCTTTAACTTATTATTTTGTGTGCACGGATGTTTT  250

seq1  GTGTGTCTGTGTAGCGTGTGCATGCAGGGTCTGTGGAGGCTGATAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTAGCGTGTGCATGCAGGGTCTGTGGAGGCTGATAGAGGG  300

seq1  CGTTGGGTTCCATGGAATTGGAGTTGCAGACAGCTGTGAGCTGCCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGGTTCCATGGAATTGGAGTTGCAGACAGCTGTGAGCTGCCATGTG  350

seq1  GTTGCTGGGAACTGAACTTGGGTCCTCTGGAAGAACAGCCAGTGTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGAACTGAACTTGGGTCCTCTGGAAGAACAGCCAGTGTTCCTA  400

seq1  ACCTCTGAGCCATCTCTCTAAAATTATTTGTTATTGTGATTGTGTTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGCCATCTCTCTAAAATTATTTGTTATTGTGATTGTGTTTGTG  450

seq1  TGTGTGTGCATATAAGTGCATGG  473
      |||||||||||||||||||||||
seq2  TGTGTGTGCATATAAGTGCATGG  473

seq1: chr15_100412196_100412765
seq2: B6Ng01-099L17.g_69_638 (reverse)

seq1  TGCCCTCCTCATCGTCCTCACCCTCTGCCCTCCCCGAGTTTCCCTGGATT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCTCATAGTCCTCACCCTCTGCCCTCCCCGAGTTTCCCTGGATT  50

seq1  TTTCTCTTCCCTGGATTCTGCCTCCTGCTGGCTCTCAGACCTGCCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCCCTGGATTCTGCCTCCTGCTGGCTCTCAGACCTGCCCCCCC  100

seq1  CCCCGCCTTGGTCCCCAGACCATTGGCCTTGGTCTTTCTCTAGAACTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCTTGGTCCCCAGACCATTGGCCTTGGTCTTTCTCTAGAACTTCC  150

seq1  AAAGCTGAAGGAATAGCACAGCGATGGTACCCTATACATGTCTGAGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAAGGAATAGCACAGCGATGGTACCCTATACATGTCTGAGACCC  200

seq1  CAGATGGCAGAGGAAAAAAAAGGGAAAACTTAAGCTGACGACTTAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCAGAGGAAAAAAAAGGGAAAACTTAAGCTGACGACTTAACCAG  250

seq1  ACACGAGTCCTTGATTCCACCACGTCAGGGCTTCCCAAGATACACACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGTCCTTGATTCCACCACGTCAGGGCTTCCCAAGATACACACACC  300

seq1  TACCAGCCATGGAGACCCCAGCAGCTCCCCTAAGACAGCACAGAACTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCCATGGAGACCCCAGCAGCTCCCCTAAGACAGCACAGAACTAAC  350

seq1  TACCATCACACACTAACTGTATACCCACGTGTCAGCTCCATGGTGTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCACACACTAACTGTATACCCACGTGTCAGCTCCATGGTGTAACA  400

seq1  TTCATACACTTCTAAATTAGGGGTTTTGTTGCTGTTTTCTGACAGGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACACTTCTAAATTAGGGGTTTTGTTGCTGTTTTCTGACAGGATCC  450

seq1  CATAACCCAGGCTGGAATTGAACTCCCTATGTAGCCCAGGCTGAGATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCCAGGCTGGAATTGAACTCCCTATGTAGCCCAGGCTGAGATTAC  500

seq1  AGACATCTGCTACTTTAGTAGGAACTTCTATAACCCTTATCTCTGTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTGCTACTTTAGTAGGAACTTCTATAACCCTTATCTCTGTGTAG  550

seq1  CCTTGGCTGTCCTGGAATTC  570
      ||||||||||||||||||||
seq2  CCTTGGCTGTCCTGGAATTC  570