BAC Information

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BAC

Clone NameB6Ng01-099L19
Chromosome15 (Build37)
Map Location 71,563,724 - 71,677,138
singlet/doubletdoublet
Overlap geneLOC100040847, Col22a1
Upstream geneLOC383051, 1700010C24Rik
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L19.bB6Ng01-099L19.g
ACCDH909448DH909449
length1,1411,063
definitionDH909448|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L19, 5' end.DH909449|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,563,724 - 71,564,869)(71,676,063 - 71,677,138)
sequence
gaattcacacgaatatgggagatacttgtataggtcaggatatttgtata
agggtataggtcaggatttggacaattagtccttgctccttcccatacca
tacgcaccttagagtgcctcttgggacttgcttccattttcatttggtgt
ttcagttcacacatccaatgcagtactctcacagcattcttaagagttgc
attcagataatacttggccccaaggggctgtctgtaaactgtacaatgtc
caacagtactccagatcacatcctatcacatgcgaggagatcatccgcct
ctatcctactctccagacactgacaattgtcccaagaatctaactgagca
atcagcagcaatccaaagagtagaagtgatgtgtcacctcccatgtgtac
aaaaaaggcttacctgaattcaaatattttctctcttatccctgtgactt
atagaaaaatcctaaataattgtaactggcaggctgggttagtttcctat
agtccactctgaatgtccccattagattgtctcatatggacaagactgag
gggcactttctttattaatgactattgtaggagggcccaaaccactgtgg
tcctgtcccgaggggtctaagaacgagcaagccatggggcatatgccagt
aagcagtgtgtttccatggggtctctacttcagttgctacctccaggtcc
ctgccttaagttcataatataacttaccttcatgagagacacaactttaa
actgaagcaattctgaagttgctttcagtcctggtgtttatcaaagcaat
gagtgttaaactaagaccgattatgaaggctgatgaagtgaactgtcact
ttataaacgtgagtttacctgtgtatgtgtcacagagactctgtgtggca
cagagcacccccctttgactaagacatacagagaaatagacttccaaacc
aacagcccaaacctacatcaagtccctatggcccaccacatgacagctcc
atgtttcgctttctcatagatgagaaactgaggcacatctgcgaatgagc
tattcaaatgcagaaagtgtggactcagcatctaattacttgacttcatc
tgtggaaacttgaattaaggttgagtactggaggtctggtg
gaattctgatgttcttggggagatatcccggaaccaagccttgcagaagt
gataactgtgtaaatatacatgcccatttaattttcttttagttcttctt
taatgggacactatatgtatatctgcaagaatgaaagtataataaaaata
ttttcctgtttcatttagatgtaagagctttaatataccgtacctctcat
ttttatctgcatcttaagccactaccatgtgcccttctctcacatcaatg
attttgaagcaaatactctttcaagacatattcatttttataaaaatcat
aaggcactttatttatagtcactaaagttacatgaaaaaaaaaatgacct
tttgtggccagagttttcagccatatttgtcactggacttaggcggcaga
ctctggattggttatttttttcaagcagaaaactttttttttttaatgag
tcacttttaaagaattatctcctgtgtcttcctagggtcaccctggagtt
ccaggcttcatgggcccaccggggaatcctgggccaccagtaagtagact
aatgtccttcatttcctggttttggctttcaaggaatgtgtccttgctca
atggaacttgcatcacactggacctatcttatttgaagggatggatttac
ccttaaagcactcagcgatgagaaggacatgaataggacgaatctcgagg
gacttgggtggctgttcttgtgcctgagggtccctggcacaaattgaagc
tagtgtttcaaggttaggatgtcccattaagaactcctttatattgaact
tgaagatgcccatatgagcccagattctccccaatgttctgtaatcaata
actcataattacaagttattgctcagtattattcttttaactactaatta
ttattctcaggcatttttgataactataatatccaatttatgtccactta
ggaaaatactttttgagctaggtgtggtggtgcactctttaatccagcac
tgggagtcagaaggcaggtgatttctgagtcgagtcacctggtttacgag
tgagtcagatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_71563724_71564869
seq2: B6Ng01-099L19.b_51_1191

seq1  GAATTCACACGAATATGGGAGATACTTGTATAGGTCAGGATATTTGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACGAATATGGGAGATACTTGTATAGGTCAGGATATTTGTATA  50

seq1  AGGGTATAGGTCAGGATTTGGACAATTAGTCCTTGCTCCTTCCCATACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATAGGTCAGGATTTGGACAATTAGTCCTTGCTCCTTCCCATACCA  100

seq1  TACGCACCTTAGAGTGCCTCTTGGGACTTGCTTCCATTTTCATTTGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCACCTTAGAGTGCCTCTTGGGACTTGCTTCCATTTTCATTTGGTGT  150

seq1  TTCAGTTCACACATCCAATGCAGTACTCTCACAGCATTCTTAAGAGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCACACATCCAATGCAGTACTCTCACAGCATTCTTAAGAGTTGC  200

seq1  ATTCAGATAATACTTGGCCCCAAGGGGCTGTCTGTAAACTGTACAATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATAATACTTGGCCCCAAGGGGCTGTCTGTAAACTGTACAATGTC  250

seq1  CAACAGTACTCCAGATCACATCCTATCACATGCGAGGAGATCATCCGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTACTCCAGATCACATCCTATCACATGCGAGGAGATCATCCGCCT  300

seq1  CTATCCTACTCTCCAGACACTGACAATTGTCCCAAGAATCTAACTGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTACTCTCCAGACACTGACAATTGTCCCAAGAATCTAACTGAGCA  350

seq1  ATCAGCAGCAATCCAAAGAGTAGAAGTGATGTGTCACCTCCCATGTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGCAATCCAAAGAGTAGAAGTGATGTGTCACCTCCCATGTGTAC  400

seq1  AAAAAAGGCTTACCTGAATTCAAATATTTTCTCTCTTATCCCTGTGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGCTTACCTGAATTCAAATATTTTCTCTCTTATCCCTGTGACTT  450

seq1  ATAGAAAAATCCTAAATAATTGTAACTGGCAGGCTGGGTTAGTTTCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAATCCTAAATAATTGTAACTGGCAGGCTGGGTTAGTTTCCTAT  500

seq1  AGTCCACTCTGAATGTCCCCATTAGATTGTCTCATATGGACAAGACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTCTGAATGTCCCCATTAGATTGTCTCATATGGACAAGACTGAG  550

seq1  GGGCACTTTCTTTATTAATGACTATTGTAGGAGGGCCCAAACCACTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTTTCTTTATTAATGACTATTGTAGGAGGGCCCAAACCACTGTGG  600

seq1  TCCTGTCCCGAGGGGTCTAAGAACGAGCAAGCCATGGGGCATATGCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCCGAGGGGTCTAAGAACGAGCAAGCCATGGGGCATATGCCAGT  650

seq1  AAGCAGTGTGTTTCCATGGGGTCTCTACTTCAGTTGCTACCTCCAGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGTGTTTCCATGGGGTCTCTACTTCAGTTGCTACCTCCAGGTCC  700

seq1  CTGCCTTAAGTTCATAATATAACTTACCTTCATGAGAGACACAACTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTAAGTTCATAATATAACTTACCTTCATGAGAGACACAACTTTAA  750

seq1  ACTGAAGCAATTCTGAAGTTGCTTTCAGTCCTGGTGTTTATCAAAGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCAATTCTGAAGTTGCTTTCAGTCCTGGTGTTTATCAAAGCAAT  800

seq1  GAGTGTTAAACTAAGACCGATTATGAAGGCTGATGAAGTGAACTGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAAACTAAGACCGATTATGAAGGCTGATGAAGTGAACTGTCACT  850

seq1  TTATAAACGTGAGTTTACCTGTGTATGTGTCACAGAGACTCTGTGTGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACGTGAGTTTACCTGTGTATGTGTCACAGAGACTCTGTGTGGCA  900

seq1  CAGAGCA-CCCCCTTTGACTAAGACATACAGAGAAATAGACTTCCAAACC  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACCCCCCTTTGACTAAGACATACAGAGAAATAGACTTCCAAACC  950

seq1  AACAGCCCAAACCTACATCAAGTCCCTATGGCCACACCACATGACAGGCT  999
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  AACAGCCCAAACCTACATCAAGTCCCTATGGCC-CACCACATGACA-GCT  998

seq1  CCATGTTTCGC-TTCTCATAGATGAGGAAACTGAGGCACATCTGGCGAAT  1048
      ||||||||||| ||||||||||||| ||||||||||||||||| ||||||
seq2  CCATGTTTCGCTTTCTCATAGATGA-GAAACTGAGGCACATCT-GCGAAT  1046

seq1  GGAGCTATTCAAATGCAGAAAGTGTGGACTCAGCATCTATATACTTGACC  1098
       ||||||||||||||||||||||||||||||||||||||  ||||||| |
seq2  -GAGCTATTCAAATGCAGAAAGTGTGGACTCAGCATCTAATTACTTGA-C  1094

seq1  TTCATTCTGT-GAAACCTGAATAAAGTTTTGAGTACTGGAGTGCTGGTG  1146
      |||| ||||| ||||| ||||| |||  |||||||||||||  ||||||
seq2  TTCA-TCTGTGGAAACTTGAATTAAG-GTTGAGTACTGGAGGTCTGGTG  1141

seq1: chr15_71676063_71677138
seq2: B6Ng01-099L19.g_65_1127 (reverse)

seq1  GCTATCCTGGAACTCACTCTGTAGACCAGGGTGACCTCGAACTCAGAAAT  50
      ||||| |||  |||||||| ||| |||| ||||| |||| ||||||||| 
seq2  GCTAT-CTG--ACTCACTC-GTAAACCA-GGTGA-CTCG-ACTCAGAAA-  42

seq1  TCACCTGCC-TCTGACTCCCAAGTGCTGGGATTAAAGGAGTGCACCACCA  99
      ||||||||| |||||||||| |||||| |||||||| |||||||||||||
seq2  TCACCTGCCTTCTGACTCCC-AGTGCT-GGATTAAA-GAGTGCACCACCA  89

seq1  CACCTAGCTCAAAAAGTATTTTCTTAAGTGGAACAATAAATTGGATATTA  149
      ||||||||||||||||||||||| ||||||||   |||||||||||||||
seq2  CACCTAGCTCAAAAAGTATTTTCCTAAGTGGA--CATAAATTGGATATTA  137

seq1  TAGTTATCAAAAATGCCTGAGAATAATAATTAGTAGTTAAAAAGAATAAT  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGTTATCAAAAATGCCTGAGAATAATAATTAGTAGTT-AAAAGAATAAT  186

seq1  ACTGAGCAATAACTTGTAATTATGAGTTATTGATTACAGAACATTGGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAATAACTTGTAATTATGAGTTATTGATTACAGAACATTGGGGA  236

seq1  GAATCTGGGCTCATATGGGCATCTTCAAGTTCAATATAAAGGAGTTCTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGGCTCATATGGGCATCTTCAAGTTCAATATAAAGGAGTTCTTA  286

seq1  ATGGGACATCCTAACCTTGAAACACTAGCTTCAATTTGTGCCAGGGACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACATCCTAACCTTGAAACACTAGCTTCAATTTGTGCCAGGGACCC  336

seq1  TCAGGCACAAGAACAGCCACCCAAGTCCCTCGAGATTCGTCCTATTCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACAAGAACAGCCACCCAAGTCCCTCGAGATTCGTCCTATTCATG  386

seq1  TCCTTCTCATCGCTGAGTGCTTTAAGGGTAAATCCATCCCTTCAAATAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCATCGCTGAGTGCTTTAAGGGTAAATCCATCCCTTCAAATAAG  436

seq1  ATAGGTCCAGTGTGATGCAAGTTCCATTGAGCAAGGACACATTCCTTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCCAGTGTGATGCAAGTTCCATTGAGCAAGGACACATTCCTTGAA  486

seq1  AGCCAAAACCAGGAAATGAAGGACATTAGTCTACTTACTGGTGGCCCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAACCAGGAAATGAAGGACATTAGTCTACTTACTGGTGGCCCAGG  536

seq1  ATTCCCCGGTGGGCCCATGAAGCCTGGAACTCCAGGGTGACCCTAGGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCGGTGGGCCCATGAAGCCTGGAACTCCAGGGTGACCCTAGGAAG  586

seq1  ACACAGGAGATAATTCTTTAAAAGTGACTCATTAAAAAAAAAAAGTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAGATAATTCTTTAAAAGTGACTCATTAAAAAAAAAAAGTTTTC  636

seq1  TGCTTGAAAAAAATAACCAATCCAGAGTCTGCCGCCTAAGTCCAGTGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAAAAAAATAACCAATCCAGAGTCTGCCGCCTAAGTCCAGTGACA  686

seq1  AATATGGCTGAAAACTCTGGCCACAAAAGGTCATTTTTTTTTTCATGTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCTGAAAACTCTGGCCACAAAAGGTCATTTTTTTTTTCATGTAA  736

seq1  CTTTAGTGACTATAAATAAAGTGCCTTATGATTTTTATAAAAATGAATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGACTATAAATAAAGTGCCTTATGATTTTTATAAAAATGAATAT  786

seq1  GTCTTGAAAGAGTATTTGCTTCAAAATCATTGATGTGAGAGAAGGGCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAAGAGTATTTGCTTCAAAATCATTGATGTGAGAGAAGGGCACA  836

seq1  TGGTAGTGGCTTAAGATGCAGATAAAAATGAGAGGTACGGTATATTAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTGGCTTAAGATGCAGATAAAAATGAGAGGTACGGTATATTAAAG  886

seq1  CTCTTACATCTAAATGAAACAGGAAAATATTTTTATTATACTTTCATTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACATCTAAATGAAACAGGAAAATATTTTTATTATACTTTCATTCT  936

seq1  TGCAGATATACATATAGTGTCCCATTAAAGAAGAACTAAAAGAAAATTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATATACATATAGTGTCCCATTAAAGAAGAACTAAAAGAAAATTAA  986

seq1  ATGGGCATGTATATTTACACAGTTATCACTTCTGCAAGGCTTGGTTCCGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATGTATATTTACACAGTTATCACTTCTGCAAGGCTTGGTTCCGG  1036

seq1  GATATCTCCCCAAGAACATCAGAATTC  1076
      |||||||||||||||||||||||||||
seq2  GATATCTCCCCAAGAACATCAGAATTC  1063