BAC Information

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BAC

Clone NameB6Ng01-100I20
Chromosome15 (Build37)
Map Location 39,790,868 - 39,792,045
singlet/doubletsinglet
Overlap genenone
Upstream geneTOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys, Lrp12
Downstream geneLOC100039130, LOC670013, LOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100I20.bB6Ng01-100I20.g
ACCDH910020DH910021
length1,0681,184
definitionDH910020|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I20, 5' end.DH910021|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgcctttggagtttcattaggtccca
tttgtcaattctcgatcttacagcacaagccattgctgttctgttcagga
atttttcccctgtgcccatatcttcaaggcttttccccactttctcctct
ataagtttcagtgtctctggttttatgtgaagttcctcgatccacttaga
tttgaccttagtacaaggagataagtatggatcgattcgcattcttctac
atgataacaaccagttgtgccagcaccaattgttgaaaatgctgtctttc
ttccactggatggttttagctcccttgtcgaagatcaagtgaccataggt
gtgtgggttcatttctgggtcttcaattctattccattggtctcctggtc
tgtctctataccagtaccatgcagtttttatcacaattgctctgtagtaa
agctttaggtcaggcatggtgattccaccagaggttcttttatccttgag
aagactttttgctatcctaggttttttgttattccagatgaatttgcaaa
tttctccttctaattcgttgaagaatttgagtttggaattttgatgggga
ttgcattgaatctgtagattgcttttggcaagatagccattttttacaat
gttgatcctgccatccatgagcatgggagatctttccatcttctgagatc
ttctttaatttctttcttcagagattgaagtttttatcatatagatcttt
cacttccttagtagagtcacgctagatattttatattatttgtgactatt
gagagggtgttgtttccctaatttctttctcagcctgttcattctttgta
taagaaaggccatgacttgttgagattattttaatccagctaccttaccc
aaacctggtttattagca
gaattcctactctgctcttcatgcatgctatttttaatattggtaaattt
gagttaaatgcagtttaagtgactaagtctcagagaacttgttctgtcac
ttacataagaaatctaacccatagatagcagagcataatttgaactcaaa
tcattagatgctgggctatttatactctgtcatgttaatcataccagctc
atcttgtccttttagcaataacagcagaagacgttttagaaatgtacttg
ttatatacatttaacacagactataacattcagcttcaatacccttacaa
agcagacacaactggcactttactctataaaagaggaaaagtgttcagtg
atacagcaaagttaaacaaccaatgagattgaatccataagaggatgtta
tagtgattcctatctgatggagagccagattcacagagatccactgatgt
gctgatgtttgctcagtggctaagtgtccaactgggtctcaccagtcttc
tgatggcaatcttcatggccttaacaagagtagcataacattatttttaa
atatggagttattaacggctcttgaaagatgcaagagctgtgtaataaga
actctaagcatttactctgtgtgaaacttaaaagtgaatgcaagagatgc
agaagaaacatattaagaacactaagtaaccatttcacaccatgaagaat
aactgtggacccctgagaaactgcactaaaagacaatccaaccaagcatg
tagaaatcagaaattggatcgctctgtggaaacaaatgccaaggtatgat
ttaatctgtgcaataagtgtaccctttttaagtcaacttgcttcctattc
ctttttctccgtgtgtgatagctaattctcttcggtcactttttctatca
ttttaaaggcaagcaatcatgaccttattaatagaatatcacggctttct
attaaagattaggacttagaaagtccatttctaatttcaaattaattctg
gatctttctttatttttctttagcagtggagttagcattactaccaacca
ttatgtggttttttattgtgttcaagtagaatgttggcacccatcttggg
ctgtcccacgccaagtggctaggatatctttatgcccattgtcttgggtc
tggcaaaattcaccttcctcatggttcattcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39790868_39792045
seq2: B6Ng01-100I20.g_70_1253

seq1  GAATTCCTACTCTGCTCTTCATGCATGCTATTTTTAATATTGGTAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTCTGCTCTTCATGCATGCTATTTTTAATATTGGTAAATTT  50

seq1  GAGTTAAATGCAGTTTAAGTGACTAAGTCTCAGAGAACTTGTTCTGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAATGCAGTTTAAGTGACTAAGTCTCAGAGAACTTGTTCTGTCAC  100

seq1  TTACATAAGAAATCTAACCCATAGATAGCAGAGCATAATTTGAACTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAGAAATCTAACCCATAGATAGCAGAGCATAATTTGAACTCAAA  150

seq1  TCATTAGATGCTGGGCTATTTATACTCTGTCATGTTAATCATACCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGATGCTGGGCTATTTATACTCTGTCATGTTAATCATACCAGCTC  200

seq1  ATCTTGTCCTTTTAGCAATAACAGCAGAAGACGTTTTAGAAATGTACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCCTTTTAGCAATAACAGCAGAAGACGTTTTAGAAATGTACTTG  250

seq1  TTATATACATTTAACACAGACTATAACATTCAGCTTCAATACCCTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACATTTAACACAGACTATAACATTCAGCTTCAATACCCTTACAA  300

seq1  AGCAGACACAACTGGCACTTTACTCTATAAAAGAGGAAAAGTGTTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACACAACTGGCACTTTACTCTATAAAAGAGGAAAAGTGTTCAGTG  350

seq1  ATACAGCAAAGTTAAACAACCAATGAGATTGAATCCATAAGAGGATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAAAGTTAAACAACCAATGAGATTGAATCCATAAGAGGATGTTA  400

seq1  TAGTGATTCCTATCTGATGGAGAGCCAGATTCACAGAGATCCACTGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTCCTATCTGATGGAGAGCCAGATTCACAGAGATCCACTGATGT  450

seq1  GCTGATGTTTGCTCAGTGGCTAAGTGTCCAACTGGGTCTCACCAGTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTTTGCTCAGTGGCTAAGTGTCCAACTGGGTCTCACCAGTCTTC  500

seq1  TGATGGCAATCTTCATGGCCTTAACAAGAGTAGCATAACATTATTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCAATCTTCATGGCCTTAACAAGAGTAGCATAACATTATTTTTAA  550

seq1  ATATGGAGTTATTAACGGCTCTTGAAAGATGCAAGAGCTGTGTAATAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGTTATTAACGGCTCTTGAAAGATGCAAGAGCTGTGTAATAAGA  600

seq1  ACTCTAAGCATTTACTCTGTGTGAAACTTAAAAGTGAATGCAAGAGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGCATTTACTCTGTGTGAAACTTAAAAGTGAATGCAAGAGATGC  650

seq1  AGAAGAAACATATTAAGAACACTAAGTAACCATTTCACACCATGAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACATATTAAGAACACTAAGTAACCATTTCACACCATGAAGAAT  700

seq1  AACTGTGGACCCCTGAGAAACTGCACTAAAAGACAATCCAACCAAGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGACCCCTGAGAAACTGCACTAAAAGACAATCCAACCAAGCATG  750

seq1  TAGAAATCAGAAATTGGATCGCTCTGTGGAAACAAATGCCAAGGTATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCAGAAATTGGATCGCTCTGTGGAAACAAATGCCAAGGTATGAT  800

seq1  TTAATCTGTGCAATAAGTGTACCC-TTTTAAGTCAACTTGCTTCCTATTC  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAATCTGTGCAATAAGTGTACCCTTTTTAAGTCAACTTGCTTCCTATTC  850

seq1  CTTTTCCTCCGTGTGTGATAGCTAATTCTCTTCGGTCACTTTTCCTATCA  899
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTTTTCTCCGTGTGTGATAGCTAATTCTCTTCGGTCACTTTTTCTATCA  900

seq1  TTTTAAAGGCAAGCAATCATGACCTTATTAATAGAATATCACGGCTTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGCAAGCAATCATGACCTTATTAATAGAATATCACGGCTTTCT  950

seq1  AATCTAAAGATTAAGGACTTAAGAAAGTCCATTTCTAAATTTCAAATTAT  999
      |   |||||||| ||||||| ||||||||||||||| |||||||||||| 
seq2  A--TTAAAGATT-AGGACTT-AGAAAGTCCATTTCT-AATTTCAAATTAA  995

seq1  TCCTGGATCTTTCCTTATTTTTCTTTAGCAGTGAGTATAAGCATTTACTA  1049
      | ||||||||||| ||||||||||||||||||| |  | |||| ||||||
seq2  TTCTGGATCTTTCTTTATTTTTCTTTAGCAGTG-GAGTTAGCA-TTACTA  1043

seq1  CCAA-CAATATGT-GTTTTTTAT--TGTTCAAGTAGAATG-TGGCACCCA  1094
      |||| || ||||| |||||||||  ||||||||||||||| |||||||||
seq2  CCAACCATTATGTGGTTTTTTATTGTGTTCAAGTAGAATGTTGGCACCCA  1093

seq1  TCCT-GGCTG-CCCACGCAAAGT-GCTAG---ACTCTTATAGCCATTGTC  1138
      || | ||||| ||||||| |||| |||||   |   ||||  ||||||||
seq2  TCTTGGGCTGTCCCACGCCAAGTGGCTAGGATATCTTTATGCCCATTGTC  1143

seq1  TT--GTCTGGCAGAAATTCCACTTCCTCAT-GTTCACATCATG  1178
      ||  |||||||| ||||||  ||||||||| |||||  |||||
seq2  TTGGGTCTGGCA-AAATTCACCTTCCTCATGGTTCA-TTCATG  1184