BAC Information

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BAC

Clone NameB6Ng01-101K11
Chromosome15 (Build37)
Map Location 44,256,931 - 44,409,732
singlet/doubletdoublet
Overlap geneNudcd1, Eny2, Pkhd1l1
Upstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041
Downstream geneEbag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101K11.bB6Ng01-101K11.g
ACCDH910771DH910772
length1,053943
definitionDH910771|Mus musculus domesticus DNA, BAC clone: B6Ng01-101K11, 5' end.DH910772|Mus musculus domesticus DNA, BAC clone: B6Ng01-101K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,408,664 - 44,409,732)(44,256,931 - 44,257,875)
sequence
gaattccataactttcaatgggtaagtaagcatagaacacatgtggttca
atcattcccatcaccatagctagtgtccaacaatagtaaagaggcatcaa
attctaaagaaggaagtaaggccatttttacctacccagcatgcatacat
tcctataaactggtagacaatgaaaaaacccagggaacaagagctaaaga
atgactcattttaacaaagtcccgattgcaaatccactgattgtgaactg
ataaattgttcaaaactgtaaggttttaggataatttgtaatgtagcaag
aactaactggtgcattgttttcattttggcctctttgtttacattatata
ctctgtgggttacataaaagacatttttaaaaatcacacttaaaaatcta
ataatgcaaaggctatttccaaaatccttaagtaagtttttctactagcc
ttaaaaagtatattttgtcttaagaaattctttgaaagaataatatcata
gatgtgtagaaataaaatgcagtggcagacactgaatgtgtctttcctag
atctttattaggccagtaagttcaactccatctcctcctgtaagtgcgga
ctgcaaaccattcatagctgtatgatttttaaagatttttttcatgaaca
catatgggctcccttgccataaaaattagacactcctcattattgctgat
acaggtgtagccagacttaaccaaacagagataagaaagacccctaggaa
aatatggggtgaactcaaacaaatctgtagccctcttttatacaaatgat
aaatgggctaagaaagaaattacgtaaacaacacccttcacaatagccac
aaataaaattaaataacttggtgtaacttcaaccacccaaggaaaagaac
tgtgtgacagaacttcaaaagtctctgaagaaagatttgaagaggtatca
gagatggaaagatctcccatgctcatggatagtagatcacatagtacaaa
tggccatctgagcacagtatctacgatcaatgcattccatcacacattct
tca
gaattctctatcctaccactgagatccctgcacactcacattcattactg
ctctcttcccaaaagctaggaaacagaatcaatctagatgtttatcaata
gatgactgaataaaggaaagctacacagatgcacgtatatgaaatgcatt
atattcagctgtaaagaaaatgagatttgcagaaaaatggacagctctaa
tcttggttgtcaacttcataggatcccaaatcatctttttttttttaaga
tttatttatttattatatgtaagtcactgtagctgtcttccgacactcca
gaagagggagtcagatctcattagggatagttgtaagccaccatgtggtt
gctgggatttgaactcaagagcaggtaagagcaaggtaagagcagtcggg
tgctcttacctgctgagccatctaaccagctccatcccaaatcatcttat
agataagcctctgggcaaacctatgagagattacctagatcttaatgggg
gcagcactactgaataaagagaaatcaggttgagagtaagcattctcatt
tcctgactgtgggtgccagcagagagagttacacaagggcacaaggaaac
ttgggcattatacctgtttagtaccttgatttcacattaacagagagtaa
tataatttcctagactttcactgtcccaacttttagcgctctaaatctcc
accctctgctagggtcttcccaacagcaattctcacttgattatttattt
gctttgcccaatggaacaagtggaaatgtgtcgacagccactggaacagc
atgttacacgtgacttaacttcgcaaacagcctgtgctagcctgtgaaag
gtgacagccatatggaagactcagtcaagatcactgcaagtgatctaaac
aatcaagctgaactaaaactgcctctgccacctgaactgaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44408664_44409732
seq2: B6Ng01-101K11.b_44_1096 (reverse)

seq1  TGAAGAATTGTGTTGGATGGGAATTGCATTGAATCTGTAGATTACTGTTG  50
      ||||||| |||||  |||||  | ||||||| ||| ||||| ||||| ||
seq2  TGAAGAA-TGTGT--GATGG--AATGCATTG-ATC-GTAGA-TACTG-TG  41

seq1  CTCAGATGGCCATTTGTACTATGTTGATTCTACTAATCCATGAGCATGGG  100
      ||||||||||||||||||||||| ||| |||||| |||||||||||||||
seq2  CTCAGATGGCCATTTGTACTATG-TGA-TCTACT-ATCCATGAGCATGGG  88

seq1  AGATCTTTCCATCTTCTGATACCTTCTTCAAATTCTTTCTTCAGAGACTT  150
      ||||||||||||| ||||||||| |||||||| |||||||||||||||||
seq2  AGATCTTTCCATC-TCTGATACC-TCTTCAAA-TCTTTCTTCAGAGACTT  135

seq1  TTGAAGTTCTTGTCACACAGTTCTTTTCCTTGGTTGGTTGAAGTTACACC  200
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  TTGAAGTTC-TGTCACACAGTTCTTTTCCTTGGGTGGTTGAAGTTACACC  184

seq1  AAGTTATTTAATTTTATTTGTGGCTATTGTGAAGGGTGTTGTTTACGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTTAATTTTATTTGTGGCTATTGTGAAGGGTGTTGTTTACGTAA  234

seq1  TTTCTTTCTTAGCCCATTTATCATTTGTATAAAAGAGGGCTACAGATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTAGCCCATTTATCATTTGTATAAAAGAGGGCTACAGATTTG  284

seq1  TTTGAGTTCACCCCATATTTTCCTAGGGGTCTTTCTTATCTCTGTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTCACCCCATATTTTCCTAGGGGTCTTTCTTATCTCTGTTTGGT  334

seq1  TAAGTCTGGCTACACCTGTATCAGCAATAATGAGGAGTGTCTAATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGGCTACACCTGTATCAGCAATAATGAGGAGTGTCTAATTTTTA  384

seq1  TGGCAAGGGAGCCCATATGTGTTCATGAAAAAAATCTTTAAAAATCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGGAGCCCATATGTGTTCATGAAAAAAATCTTTAAAAATCATAC  434

seq1  AGCTATGAATGGTTTGCAGTCCGCACTTACAGGAGGAGATGGAGTTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGAATGGTTTGCAGTCCGCACTTACAGGAGGAGATGGAGTTGAAC  484

seq1  TTACTGGCCTAATAAAGATCTAGGAAAGACACATTCAGTGTCTGCCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCCTAATAAAGATCTAGGAAAGACACATTCAGTGTCTGCCACTG  534

seq1  CATTTTATTTCTACACATCTATGATATTATTCTTTCAAAGAATTTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTTCTACACATCTATGATATTATTCTTTCAAAGAATTTCTTAA  584

seq1  GACAAAATATACTTTTTAAGGCTAGTAGAAAAACTTACTTAAGGATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATATACTTTTTAAGGCTAGTAGAAAAACTTACTTAAGGATTTTG  634

seq1  GAAATAGCCTTTGCATTATTAGATTTTTAAGTGTGATTTTTAAAAATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCCTTTGCATTATTAGATTTTTAAGTGTGATTTTTAAAAATGTC  684

seq1  TTTTATGTAACCCACAGAGTATATAATGTAAACAAAGAGGCCAAAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTAACCCACAGAGTATATAATGTAAACAAAGAGGCCAAAATGAA  734

seq1  AACAATGCACCAGTTAGTTCTTGCTACATTACAAATTATCCTAAAACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCACCAGTTAGTTCTTGCTACATTACAAATTATCCTAAAACCTT  784

seq1  ACAGTTTTGAACAATTTATCAGTTCACAATCAGTGGATTTGCAATCGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGAACAATTTATCAGTTCACAATCAGTGGATTTGCAATCGGGA  834

seq1  CTTTGTTAAAATGAGTCATTCTTTAGCTCTTGTTCCCTGGGTTTTTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAAAATGAGTCATTCTTTAGCTCTTGTTCCCTGGGTTTTTTCAT  884

seq1  TGTCTACCAGTTTATAGGAATGTATGCATGCTGGGTAGGTAAAAATGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCAGTTTATAGGAATGTATGCATGCTGGGTAGGTAAAAATGGCC  934

seq1  TTACTTCCTTCTTTAGAATTTGATGCCTCTTTACTATTGTTGGACACTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTTCTTTAGAATTTGATGCCTCTTTACTATTGTTGGACACTAG  984

seq1  CTATGGTGATGGGAATGATTGAACCACATGTGTTCTATGCTTACTTACCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTGATGGGAATGATTGAACCACATGTGTTCTATGCTTACTTACCC  1034

seq1  ATTGAAAGTTATGGAATTC  1069
      |||||||||||||||||||
seq2  ATTGAAAGTTATGGAATTC  1053

seq1: chr15_44256931_44257875
seq2: B6Ng01-101K11.g_79_1014

seq1  CTATCCTACCACTGAGATCCCTGCACACTCACATTCATTACTGCTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTACCACTGAGATCCCTGCACACTCACATTCATTACTGCTCTCTT  50

seq1  CCCAAAAGCTAGGAAACAGAATCAATCTAGATGTTTATCAATAGATGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGCTAGGAAACAGAATCAATCTAGATGTTTATCAATAGATGACT  100

seq1  GAATAAAGGAAAGCTACACAGATGCACGTATATGAAATGCATTATATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGGAAAGCTACACAGATGCACGTATATGAAATGCATTATATTCA  150

seq1  GCTGTAAAGAAAATGAGATTTGCAGAAAAATGGACAGCTCTAATCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAAGAAAATGAGATTTGCAGAAAAATGGACAGCTCTAATCTTGGT  200

seq1  TGTCAACTTCATAGGATCCCAAATCATCTTTTTTTTTTTAAGATTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTTCATAGGATCCCAAATCATCTTTTTTTTTTTAAGATTTATTT  250

seq1  ATTTATTATATGTAAGTCACTGTAGCTGTCTTCCGACACTCCAGAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATATGTAAGTCACTGTAGCTGTCTTCCGACACTCCAGAAGAGG  300

seq1  GAGTCAGATCTCATTAGGGATAGTTGTAAGCCACCATGTGGTTGCTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGATCTCATTAGGGATAGTTGTAAGCCACCATGTGGTTGCTGGGA  350

seq1  TTTGAACTCAAGAGCAGGTAAGAGCAAGGTAAGAGCAGTCGGGTGCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCAAGAGCAGGTAAGAGCAAGGTAAGAGCAGTCGGGTGCTCTT  400

seq1  ACCTGCTGAGCCATCTAACCAGCTCCATCCCAAATCATCTTATAGATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGAGCCATCTAACCAGCTCCATCCCAAATCATCTTATAGATAAG  450

seq1  CCTCTGGGCAAACCTATGAGAGATTACCTAGATCTTAATGGGGGCAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGCAAACCTATGAGAGATTACCTAGATCTTAATGGGGGCAGCAC  500

seq1  TACTGAATAAAGAGAAATCAGGTTGAGAGTAAGCATTCTCATTTCCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATAAAGAGAAATCAGGTTGAGAGTAAGCATTCTCATTTCCTGAC  550

seq1  TGTGGGTGCCAGCAGAGAGAGTTACACAAGGGCACAAGGAAACTTGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGCCAGCAGAGAGAGTTACACAAGGGCACAAGGAAACTTGGGCA  600

seq1  TTATACCTGTTTAGTACCTTGATTTCACATTAACAGAGAGTAATATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTGTTTAGTACCTTGATTTCACATTAACAGAGAGTAATATAATT  650

seq1  TCCTAGACTTTCACTGTCCCAACTTTTAGCGCTCTAGATCTCCACCCTCT  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCTAGACTTTCACTGTCCCAACTTTTAGCGCTCTAAATCTCCACCCTCT  700

seq1  GCTAGGGTCTT-CCAACAGCAATTCTTCACTTGATTATTTAATTTGCTTT  749
      ||||||||||| ||||||||||||| |||||||||||||| |||||||||
seq2  GCTAGGGTCTTCCCAACAGCAATTC-TCACTTGATTATTT-ATTTGCTTT  748

seq1  GCCCAATGGAACAAGTGGAAATGTGTCGACAGCCACTGGAACAGCATG-T  798
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCCAATGGAACAAGTGGAAATGTGTCGACAGCCACTGGAACAGCATGTT  798

seq1  ACACCGTGACTTAACTTCCGCAAACAGCCTGTGCTAGCCTGTTGAAAGGT  848
      ||| ||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  ACA-CGTGACTTAACTT-CGCAAACAGCCTGTGCTAGCCTG-TGAAAGGT  845

seq1  GACCAGCCATATGGAAGACTCAAGTCAAGATCATCTGGCAAGTGATCTAG  898
      || |||||||||||||||||| ||||||||||| || |||||||||||| 
seq2  GA-CAGCCATATGGAAGACTC-AGTCAAGATCA-CT-GCAAGTGATCTAA  891

seq1  ACAAATCAAGCTG-ACTAGAACTGCCTCTGCCAACTCGTAACTGAATG  945
      || |||||||||| |||| |||||||||||||| ||   |||||||||
seq2  AC-AATCAAGCTGAACTAAAACTGCCTCTGCCACCT--GAACTGAATG  936