BAC Information

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BAC

Clone NameB6Ng01-102C01
Chromosome15 (Build37)
Map Location 53,675,001 - 53,836,686
singlet/doubletdoublet
Overlap geneSamd12, EG665097
Upstream geneLOC100039745, Ext1
Downstream geneEG621631, Tnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102C01.bB6Ng01-102C01.g
ACCDH911106DH911107
length2361,180
definitionDH911106|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C01, 5' end.DH911107|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,836,451 - 53,836,686)(53,675,001 - 53,676,195)
sequence
cttgtctacatgtgggaacattttccaaaaatgaataacggcaaggtaaa
ccatatgcaataacagagaatatttttatgttgtacctttatgttatttt
gcatagttcatttgtatgcatacaggtttgtatgagtttacctatctaga
gaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgagtgtgcgtactatgtatattttatgcttaca
gaattcactcaaacaacaaatatctgtgccttttacagtatttctcaggt
tgtgatactcaaggctctgaaactgagtttgtggtctagcagatggtggc
atcagataataagcacaataaataacaaagcatatactcttctagaaagt
gataagcataggagaggatgatatgacacagatcagtgccttggtaaaga
gtctgccttcctttcaatgaaactgcctcgtgggctttgtctcagagcaa
ctcagaggagatgaaagtacagccgtgcagctaggatgaaggctcagagg
tgggcaggtgcctggattaaataaagcaggaacaggcacagcactgaaaa
gcgtatcagcagatgacaggagagacttgctaggggacactgcacaaggg
cctgagagcatgctggcaacatgaccgttcaacaaaagggcaaatccagg
ctccaagtcttactgttattaataaggacaaagcttaatgacttggggat
ggaagtatagccattggaagtactgttataggggcctgaagaaagtatat
tttgctcctttcctgacccctacctgaaagagcttattttttaatgacat
aaaagtatacccagtaagtaacagctctaggaaggtactaccattgctct
ctgatgccaaatttaaaaactgtttttatatttttaactaagttacaata
aatgagttgtaataagtaaataataaataagatttaatatttcagattta
ttattgtatgccagacatccattttatgagcatattccatttctgtcaaa
tactgatttaatacttggcatttggtgaaaacatttagttattatatgtc
aaagactgcatgtttgtgtattgaaaattcttacgctgaagctctatccc
cagatttgatagttttaaagaacgccatctgtaaggcaattaagtttaat
aaggtatgatagagatgagttttgctttatgaggagacctcagccactca
ttctttgtcgtgtaagatgcagaaagatggcaactgcaagccagagaacc
ctcacgaacaagtcaccttacaatgtgtgaagttagcctctctagtttta
ggaattacatgaagaaaaagaatgcctgtagcacctgggttacggcactg
gtaagaacaccgtcattggctacacactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_53836451_53836686
seq2: B6Ng01-102C01.b_50_285 (reverse)

seq1  TGTAAGCATAATATATACATAGTAAGCAAATGCACAAACACACATACACA  50
      ||||||||||| |||||||||||| ||| |  |||| ||||||| |||||
seq2  TGTAAGCATAAAATATACATAGTACGCACACTCACACACACACACACACA  50

seq1  CACACACACACACACACACACACACACACACCCCTCTCTAGATAGGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCCCTCTCTAGATAGGTAAA  100

seq1  CTCATACAAACCTGTATGCATACAAATGAACTATGCAAAATAACATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACAAACCTGTATGCATACAAATGAACTATGCAAAATAACATAAAG  150

seq1  GTACAACATAAAAATATTCTCTGTTATTGCATATGGTTTACCTTGCCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACATAAAAATATTCTCTGTTATTGCATATGGTTTACCTTGCCGTT  200

seq1  ATTCATTTTTGGAAAATGTTCCCACATGTAGACAAG  236
      ||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTGGAAAATGTTCCCACATGTAGACAAG  236

seq1: chr15_53675001_53676195
seq2: B6Ng01-102C01.g_65_1244

seq1  GAATTCACTCAAACAACAAATATCTGTGCCTTTTACAGTATTTCTCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAAACAACAAATATCTGTGCCTTTTACAGTATTTCTCAGGT  50

seq1  TGTGATACTCAAGGCTCTGAAACTGAGTTTGTGGTCTAGCAGATGGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATACTCAAGGCTCTGAAACTGAGTTTGTGGTCTAGCAGATGGTGGC  100

seq1  ATCAGATAATAAGCACAATAAATAACAAAGCATATACTCTTCTAGAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATAATAAGCACAATAAATAACAAAGCATATACTCTTCTAGAAAGT  150

seq1  GATAAGCATAGGAGAGGATGATATGACACAGATCAGTGCCTTGGTAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCATAGGAGAGGATGATATGACACAGATCAGTGCCTTGGTAAAGA  200

seq1  GTCTGCCTTCCTTTCAATGAAACTGCCTCGTGGGCTTTGTCTCAGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTTCCTTTCAATGAAACTGCCTCGTGGGCTTTGTCTCAGAGCAA  250

seq1  CTCAGAGGAGATGAAAGTACAGCCGTGCAGCTAGGATGAAGGCTCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGAGATGAAAGTACAGCCGTGCAGCTAGGATGAAGGCTCAGAGG  300

seq1  TGGGCAGGTGCCTGGATTAAATAAAGCAGGAACAGGCACAGCACTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGTGCCTGGATTAAATAAAGCAGGAACAGGCACAGCACTGAAAA  350

seq1  GCGTATCAGCAGATGACAGGAGAGACTTGCTAGGGGACACTGCACAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATCAGCAGATGACAGGAGAGACTTGCTAGGGGACACTGCACAAGGG  400

seq1  CCTGAGAGCATGCTGGCAACATGACCGTTCAACAAAAGGGCAAATCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGCATGCTGGCAACATGACCGTTCAACAAAAGGGCAAATCCAGG  450

seq1  CTCCAAGTCTTACTGTTATTAATAAGGACAAAGCTTAATGACTTGGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTCTTACTGTTATTAATAAGGACAAAGCTTAATGACTTGGGGAT  500

seq1  GGAAGTATAGCCATTGGAAGTACTGTTATAGGGGCCTGAAGAAAGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATAGCCATTGGAAGTACTGTTATAGGGGCCTGAAGAAAGTATAT  550

seq1  TTTGCTCCTTTCCTGACCCCTACCTGAAAGAGCTTATTTTTTAATGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCTTTCCTGACCCCTACCTGAAAGAGCTTATTTTTTAATGACAT  600

seq1  AAAAGTATACCCAGTAAGTAACAGCTCTAGGAAGGTACTACCATTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATACCCAGTAAGTAACAGCTCTAGGAAGGTACTACCATTGCTCT  650

seq1  CTGATGCCAAATTTAAAAACTGTTTTTATATTTTTAACTAAGTTACAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCAAATTTAAAAACTGTTTTTATATTTTTAACTAAGTTACAATA  700

seq1  AATGAGTTGTAATAAGTAAATAATAAATAAGATTTAATATTTCAGATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTGTAATAAGTAAATAATAAATAAGATTTAATATTTCAGATTTA  750

seq1  TTATTGTATGCCAGACATCCATTTTATGAGCATATTCCATTTCTGTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTATGCCAGACATCCATTTTATGAGCATATTCCATTTCTGTCAAA  800

seq1  TACTGATTTAATACTTGGCATTTGGTGAAAACATTTAGTTATTATATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTTAATACTTGGCATTTGGTGAAAACATTTAGTTATTATATGTC  850

seq1  AAAGACTGCATGTTTGTGTATTGAAAATTCTTACGCTGAAGCTCTATCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCATGTTTGTGTATTGAAAATTCTTACGCTGAAGCTCTATCCC  900

seq1  CAGATTTGATAGTTTTAAAGAAGGCCATCTGTAAGGCAATTAAGTTTAAT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGATTTGATAGTTTTAAAGAACGCCATCTGTAAGGCAATTAAGTTTAAT  950

seq1  AAGGTTATGATAGAAGATGAGTTTTGCTTTATGAAGGGAGACCTCAGCCC  1000
      |||| |||||||| ||||||||||||||||||||  ||||||||||| ||
seq2  AAGG-TATGATAG-AGATGAGTTTTGCTTTATGA--GGAGACCTCAG-CC  995

seq1  ACTCATTCTTTGTCGTGTAAAGATGCAGAAAGATGGCCAACTGCAAGCCA  1050
      |||||||||||||||||| ||||||||||||||||| |||||||||||| 
seq2  ACTCATTCTTTGTCGTGT-AAGATGCAGAAAGATGG-CAACTGCAAGCC-  1042

seq1  AGAGAACCCTCACGGGAACAAGTCACC-TACCATGT-TGAAGTTAGCCTT  1098
      |||||||||||||  |||||||||||| ||| |||| |||||||||||| 
seq2  AGAGAACCCTCAC--GAACAAGTCACCTTACAATGTGTGAAGTTAGCCTC  1090

seq1  CCTAAGTTTTA-GAATTACATGAAAGAAAAAG-ATGGCTGTTAAAGCAAC  1146
       || ||||||| |||||||||| ||||||||| ||| ||||   ||| ||
seq2  TCT-AGTTTTAGGAATTACATG-AAGAAAAAGAATGCCTGT---AGC-AC  1134

seq1  CTGGGTTACAGCACTTTGTAAGAGCAGCTGCAGTTGGCTAACACACTGT  1195
      ||||||||| |||| | |||||| || |  || |||||| |||||||||
seq2  CTGGGTTACGGCAC-TGGTAAGAACACCGTCA-TTGGCT-ACACACTGT  1180