BAC Information

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BAC

Clone NameB6Ng01-103A04
Chromosome15 (Build37)
Map Location 22,129,679 - 22,313,826
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103A04.bB6Ng01-103A04.g
ACCDH911735DH911736
length1,1791,201
definitionDH911735|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A04, 5' end.DH911736|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,312,643 - 22,313,826)(22,129,679 - 22,130,879)
sequence
gaattcacgcctagtcactgcccatctcggggcgcagtaatggggtgatg
ggcaagcaactaatcaggtgctgtcacgccacatcaggtgctgaaacgtc
accctgcgggctatataagcagcaccattttctgggttcgggtcttcctg
agaagtaagcaataaaagctttgccgtagaaggatccggttgtccgagtg
aattcttgccagcgagatactagctcgggtgagaggcatcctgcttcccc
ttggaggtctgtgggtccccaagaattacaagcttagaaagctgctctaa
aaatctcttcccagtctggtcccttaaataaatattagaaatatagaaga
atacactcaaaaagacagagccattaaataatatttaaataaaactaaat
atagaaaaaggcaatcaaattggtgaaagatatgaataaaactatctagt
acctgaaaaggaaatagaaacaataaagaagacacaaactggagcacagc
tgacagaggtgagttgtgcatggtcccctgacctccattgggtgggactg
gcactgcctcttggtcctgagacttgcgggactgcaagagcttcctgctc
ttggagaactgtgggaacccaagaatcacaagcttgaaaagctgccccaa
ctatcccctcccactctggttttcctggggcacagccagcagagactgta
ggggacccaagtactacaagcttggaacagtcccccaccaatcccttgac
agtgaggtctacctgaggcacaaccagcagaatccagtcaggtcccctga
ccttcattatctggctcaagattccccctgcctttctaagaagtactgtc
atcataaggatcatctatccaatcctagggaaaccagatgctgaaaggac
aaagtaggaataaatcaacaagacttaggcaatatggcaccatcagagcc
cagctttcctgctacataagcactggatatcctaaggaaacaaggcctaa
gagatgatcttaaaccaaccttatgaagtgatagagacccttaaatagga
catgaataagttccggtaggaaattatataaaaaaatgtattcaaacgaa
gccacctaaaacaagaatcatttatcccagcactggaagccagaagcagc
cgatttctgagtcaggccagccttggtct
gaattcagtatttataattttcctgttatattgcagtaacaaatttggaa
aataaagtttaaagtctccatcaacaaattgaaaaataccttcactttac
ttttaaaattatttaaaggaatctctttagttttctaggcataccccaat
tggtaatttgtttaatactgtaatttttcttccattttattatttatgaa
attgagaagattcaaattcttcgtctgaagaggagttgtatgtaacctta
gatagaatagggtggattttaaaaatcacttgatacattcactaacgtgt
tcatatattcttctaagaggtaatttcaatgaaatatataattattcctg
aagtaatttacagtagaaattgagcaaaatgtattgtgaaagtattttta
aacaattctgtcagtatctcaaacagtgtggcagaacagatctattacaa
caaacatgaatattgtccagggcatatttcttgttcagatcaagtctaat
ttatatctccaagacagtagaaacactcctaatttcctaaagtgactttc
agagaaaagacctattgtaaagggaagggttagtaggcaatccttcttgt
gtctatttctggttttatctctgaagccaaatcttggaatttcttttgtc
taaagctatctattcatttgtactgaataatctttgttttgcaaagggac
taaataactgaaacattataagtaattcaaggaatgattcatcaaatatg
cagtgcatggtttatcataatgtgatggtatgatggttatttctctaaac
ctcttttctctttggtgtatttcagccattaaaaaaatgttcatggctta
attcatactgtggaaagaaatacaataatttggccaattttactaatctt
ttcaattacctcctgcctttttaaataattctttctttatctctaagtat
tgatatgttaagtttaaatctatataatttcattgtccattatcatcacc
acttagccttgtaacttgatttcactaatgaaatgtatacagatctggtt
gtatgtatttcagaagctacacttgcatggaacccacatcattttgctct
cttgttcaaggttaagaaatcagaatataatatgggagtgtatctggtta
gcacagaaccttgcatgccgagtacacaactattattcctactgtgatga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22312643_22313826
seq2: B6Ng01-103A04.b_48_1224 (reverse)

seq1  AGACCAA-GCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAA  49
      ||||||| ||||||||   ||||||||||| | |||| |||| || || |
seq2  AGACCAAGGCTGGCCT--GACTCAGAAATC-GGCTGCTTCTGGCTTCC-A  46

seq1  GTGCTGGGATTAAATGATTCTTGTTTTA-GTGGCTCTGTTTGAATACATT  98
      ||||||||| |||||||||||||||||| ||||||  |||||||||||||
seq2  GTGCTGGGA-TAAATGATTCTTGTTTTAGGTGGCTTCGTTTGAATACATT  95

seq1  TTTTTATAT-ATTTCTTA-CGGGACTTATTCATGTCCTATTTAAGGGTCT  146
      ||||||||| ||||| || ||| |||||||||||||||||||||||||||
seq2  TTTTTATATAATTTCCTACCGGAACTTATTCATGTCCTATTTAAGGGTCT  145

seq1  CTATCAACTTCATAAGGTTGGTTTAAGATCATCTTCTTAGGCCTTGTTTC  196
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTATC-ACTTCATAAGGTTGGTTTAAGATCATC-TCTTAGGCCTTGTTTC  193

seq1  CTTAGGATATCCAGTGCTTATTGTAGCAGGAAAGCTGGGCTCTGATGGTG  246
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTAGGATATCCAGTGCTTA-TGTAGCAGGAAAGCTGGGCTCTGATGGTG  242

seq1  CCATATTGCCCTAAGTCTTGTTGATTTTATTCCTACTTTGTCCTTTCAGC  296
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CCATATTG-CCTAAGTCTTGTTGA-TTTATTCCTACTTTGTCCTTTCAGC  290

seq1  ATCTGGTTTTCCCTAGGATTGGATAGATGATCCTTATGATGACAGTACTT  346
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGG-TTTCCCTAGGATTGGATAGATGATCCTTATGATGACAGTACTT  339

seq1  CTTAGAAAGGCAGGGGGAATCTTGAGCCAGATAATGAAGGTCAGGGGACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAGGCAGGGGGAATCTTGAGCCAGATAATGAAGGTCAGGGGACC  389

seq1  TGACTGGATTCTGCTGGTTGTGCCTCAGGTAGACCTCACTGTCAAGGGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGATTCTGCTGGTTGTGCCTCAGGTAGACCTCACTGTCAAGGGAT  439

seq1  TGGTGGGGGACTGTTCCAAGCTTGTAGTACTTGGGTCCCCTACAGTCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGGACTGTTCCAAGCTTGTAGTACTTGGGTCCCCTACAGTCTCT  489

seq1  GCTGGCTGTGCCCCAGGAAAACCAGAGTGGGAGGGGATAGTTGGGGCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGTGCCCCAGGAAAACCAGAGTGGGAGGGGATAGTTGGGGCAGC  539

seq1  TTTTCAAGCTTGTGATTCTTGGGTTCCCACAGTTCTCCAAGAGCAGGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGCTTGTGATTCTTGGGTTCCCACAGTTCTCCAAGAGCAGGAAG  589

seq1  CTCTTGCAGTCCCGCAAGTCTCAGGACCAAGAGGCAGTGCCAGTCCCACC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAGTCCCGCAAGTCTCAGGACCAAGAGGCAGTGCCAGTCCCACC  639

seq1  CAATGGAGGTCAGGGGACCATGCACAACTCACCTCTGTCAGCTGTGCTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGTCAGGGGACCATGCACAACTCACCTCTGTCAGCTGTGCTCC  689

seq1  AGTTTGTGTCTTCTTTATTGTTTCTATTTCCTTTTCAGGTACTAGATAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGTCTTCTTTATTGTTTCTATTTCCTTTTCAGGTACTAGATAGT  739

seq1  TTTATTCATATCTTTCACCAATTTGATTGCCTTTTTCTATATTTAGTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATATCTTTCACCAATTTGATTGCCTTTTTCTATATTTAGTTTT  789

seq1  ATTTAAATATTATTTAATGGCTCTGTCTTTTTGAGTGTATTCTTCTATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATATTATTTAATGGCTCTGTCTTTTTGAGTGTATTCTTCTATAT  839

seq1  TTCTAATATTTATTTAAGGGACCAGACTGGGAAGAGATTTTTAGAGCAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATATTTATTTAAGGGACCAGACTGGGAAGAGATTTTTAGAGCAGC  889

seq1  TTTCTAAGCTTGTAATTCTTGGGGACCCACAGACCTCCAAGGGGAAGCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGCTTGTAATTCTTGGGGACCCACAGACCTCCAAGGGGAAGCAG  939

seq1  GATGCCTCTCACCCGAGCTAGTATCTCGCTGGCAAGAATTCACTCGGACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTCTCACCCGAGCTAGTATCTCGCTGGCAAGAATTCACTCGGACA  989

seq1  ACCGGATCCTTCTACGGCAAAGCTTTTATTGCTTACTTCTCAGGAAGACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGATCCTTCTACGGCAAAGCTTTTATTGCTTACTTCTCAGGAAGACC  1039

seq1  CGAACCCAGAAAATGGTGCTGCTTATATAGCCCGCAGGGTGACGTTTCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCCAGAAAATGGTGCTGCTTATATAGCCCGCAGGGTGACGTTTCAG  1089

seq1  CACCTGATGTGGCGTGACAGCACCTGATTAGTTGCTTGCCCATCACCCCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATGTGGCGTGACAGCACCTGATTAGTTGCTTGCCCATCACCCCA  1139

seq1  TTACTGCGCCCCGAGATGGGCAGTGACTAGGCGTGAAT  1184
      ||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCGCCCCGAGATGGGCAGTGACTAGGCGTGAAT  1177

seq1: chr15_22129679_22130879
seq2: B6Ng01-103A04.g_64_1264

seq1  GAATTCAGTATTTATAATTTTCCTGTTATATTGCAGTAACAAATTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTTATAATTTTCCTGTTATATTGCAGTAACAAATTTGGAA  50

seq1  AATAAAGTTTAAAGTCTCCATCAACAAATTGAAAAATACCTTCACTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTTTAAAGTCTCCATCAACAAATTGAAAAATACCTTCACTTTAC  100

seq1  TTTTAAAATTATTTAAAGGAATCTCTTTAGTTTTCTAGGCATACCCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTATTTAAAGGAATCTCTTTAGTTTTCTAGGCATACCCCAAT  150

seq1  TGGTAATTTGTTTAATACTGTAATTTTTCTTCCATTTTATTATTTATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTGTTTAATACTGTAATTTTTCTTCCATTTTATTATTTATGAA  200

seq1  ATTGAGAAGATTCAAATTCTTCGTCTGAAGAGGAGTTGTATGTAACCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAGATTCAAATTCTTCGTCTGAAGAGGAGTTGTATGTAACCTTA  250

seq1  GATAGAATAGGGTGGATTTTAAAAATCACTTGATACATTCACTAACGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATAGGGTGGATTTTAAAAATCACTTGATACATTCACTAACGTGT  300

seq1  TCATATATTCTTCTAAGAGGTAATTTCAATGAAATATATAATTATTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTCTTCTAAGAGGTAATTTCAATGAAATATATAATTATTCCTG  350

seq1  AAGTAATTTACAGTAGAAATTGAGCAAAATGTATTGTGAAAGTATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTTACAGTAGAAATTGAGCAAAATGTATTGTGAAAGTATTTTTA  400

seq1  AACAATTCTGTCAGTATCTCAAACAGTGTGGCAGAACAGATCTATTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCTGTCAGTATCTCAAACAGTGTGGCAGAACAGATCTATTACAA  450

seq1  CAAACATGAATATTGTCCAGGGCATATTTCTTGTTCAGATCAAGTCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGAATATTGTCCAGGGCATATTTCTTGTTCAGATCAAGTCTAAT  500

seq1  TTATATCTCCAAGACAGTAGAAACACTCCTAATTTCCTAAAGTGACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTCCAAGACAGTAGAAACACTCCTAATTTCCTAAAGTGACTTTC  550

seq1  AGAGAAAAGACCTATTGTAAAGGGAAGGGTTAGTAGGCAATCCTTCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGACCTATTGTAAAGGGAAGGGTTAGTAGGCAATCCTTCTTGT  600

seq1  GTCTATTTCTGGTTTTATCTCTGAAGCCAAATCTTGGAATTTCTTTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTCTGGTTTTATCTCTGAAGCCAAATCTTGGAATTTCTTTTGTC  650

seq1  TAAAGCTATCTATTCATTTGTACTGAATAATCTTTGTTTTGCAAAGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTATCTATTCATTTGTACTGAATAATCTTTGTTTTGCAAAGGGAC  700

seq1  TAAATAACTGAAACATTATAAGTAATTCAAGGAATGATTCATCAAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTGAAACATTATAAGTAATTCAAGGAATGATTCATCAAATATG  750

seq1  CAGTGCATGGTTTATCATAATGTGATGGTATGATGGTTATTTCTCTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATGGTTTATCATAATGTGATGGTATGATGGTTATTTCTCTAAAC  800

seq1  CTCTTTTCTCTTTGGTGTATTTCAGCCATTAAAAAAATGTTCATGGCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTCTTTGGTGTATTTCAGCCATTAAAAAAATGTTCATGGCTTA  850

seq1  ATTCATACTGTGGAAAGAAATACAATAATTTGGCCAATTTTACTAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACTGTGGAAAGAAATACAATAATTTGGCCAATTTTACTAATCTT  900

seq1  TTCAATTACCTCCTGCCTTTTTTAAATAATTCTTTCTTTATCTCTAAGTA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCAATTACCTCCTGCC-TTTTTAAATAATTCTTTCTTTATCTCTAAGTA  949

seq1  TTGATATGTTAAGTTTATATCTATATAATTTCATTGTCCATTATCATCA-  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TTGATATGTTAAGTTTAAATCTATATAATTTCATTGTCCATTATCATCAC  999

seq1  CACTTAGCCTTGTAACTTGATTTCACTAATGAAATGTATACAGATCTGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCCTTGTAACTTGATTTCACTAATGAAATGTATACAGATCTGGT  1049

seq1  TGTATGTAATTTCAG-AGCTAACACTTGCATGGACACCACATCATTCTGC  1098
      ||||||| ||||||| |||| |||||||||||||  |||||||||| |||
seq2  TGTATGT-ATTTCAGAAGCT-ACACTTGCATGGAACCCACATCATTTTGC  1097

seq1  TCTCATGTCCAAGGTTAAGAAAATCAGAGTATATAATGGGAGTG-ATCTG  1147
      |||| ||| |||||||||| |||||||| ||||  ||||||||| |||||
seq2  TCTCTTGTTCAAGGTTAAG-AAATCAGAATATAATATGGGAGTGTATCTG  1146

seq1  AGTTAGCACAGAA-CTTGCATGCAGAGTACACAA-TATTTATCCTACTTT  1195
       |||||||||||| ||||||||| |||||||||| ||||  ||||||| |
seq2  -GTTAGCACAGAACCTTGCATGCCGAGTACACAACTATTATTCCTACTGT  1195

seq1  GATGAA  1201
      ||||||
seq2  GATGAA  1201