BAC Information

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BAC

Clone NameB6Ng01-103N16
Chromosome15 (Build37)
Map Location 44,200,588 - 44,354,187
singlet/doubletdoublet
Overlap geneNudcd1, Eny2, Pkhd1l1
Upstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041
Downstream geneEbag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103N16.bB6Ng01-103N16.g
ACCDH912318DH912319
length1,1061,062
definitionDH912318|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N16, 5' end.DH912319|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,200,588 - 44,201,706)(44,353,118 - 44,354,187)
sequence
gaattctgtctttatttgagagtaggtttttcaaaggattttaagaatgg
agttttggacagagaatgacttgttattgtatttctttttcatttttcgc
tgatcctaaaagtcacggttaaagagaagtgtgcacagtatttcatttca
ctgtttcctttgccactcttgttaatattgcccatctccctctgccagtc
ctcaggagctcttgcaaacaccttgatcttaggcttcatgctgaactaac
tcatccctcctccagtttctctgctgtccatatattcatacaaaatattt
tttaaaaaatttaaactcttaaaaccattttttttttcttttacaatgat
ggagaacaaacctgggcccttgaacttgttagacaaacactgactgccaa
gctacactagctggagttgaatattttcaagtgtcaacttagcctctgta
cttctcagttccttcagttctttgtctttaaaatccagtatttaaggccc
tgtccaatttggctgtaacttaatattccaaacttatcttttggtattcc
cctctcataagctctgtactatatcacagtggtctatcgtgaacacatgt
gtttcccaaacacctttgactattttcattgccaaggagtagattcagag
tcatccaggagacacacctttatgtgcctttgggggtttccaaagatggg
tgactgaagagaggatccacatttaaatatgtagcatcatcccattatgg
gcccaagagaagcagaaatggagaaagccagatgaataccaagattccca
tctgtttccttgtccacaccaatgtgagcatccttgtgctctacagttaa
gagctactcctgctctggatctctacaataatagcccattatctcctaac
gtacagcacaatacctgtcctccttcagttgtttcttgtcccagtgggga
gaaaagtaattatatacaaattgttattgcagaagatgctgctgtggtga
catggttcatggtttgtgattatgttgaggagttggatttgtagtctaga
caggcctagaatgtgctagataggaggcagagattatggcatcttggtgg
gggttc
gaattccattggtaatgacagaaatatcaactgtaccctcaattctctga
aaaaaaatagaaaaattaaagtgataaagtacttaaatccattatctttg
ctggggagctaattcagtcagtaaatgtttatgttgcaaacacgagaacc
caagttcaatccctacaatgcgcattaataaaggagagaaatagagagtg
aaaagaagccagatgtggtgtcttgacctcccatcctaggcttgttggca
agatttagccagggagataatcatatctgagaaaatatggtaaaaaaatt
cctggggaaatatatccaaggctgtacacacacaaaacaaaacaaaaaaa
cctctaaaggttgaagaaaaatagaatcactataaataaaattctaaaaa
tgtttcatttcagttatgaattagagttaattctcagatatttaaagttg
acatattaagtataggttagtgtatctaattctgaaggcagagatttagt
ggtcctgcagtgtttatgatccatttatctgcatctgtattattgcattt
taaggtgaattttcatgttgcagctgagatgctctgggaaaatggctctc
taactgatgaaggataagataccaaaaatttgtccttgttctcttgctat
agactcaaatctaatttttctacttcattcacaaactagactgcatattt
atctgaccaagttacatactccaagctctaacactagaaaccactttata
ttttcactgatggcatctgtgcaactctcaataaggtagtcttgatcatc
tcatacttcactaatgcacatgttatgttttaactgaattattaaaaaat
atttttttcatattgtcaaagcccctaaatccttactctatcattcaacc
aacacacactcattgattttttttttcccctacacatcttacctatgcct
tcacttactctctgggtttgaaatttggtgtcagtgactgatctgcatat
atgatctctgtgcacatattagtgacatagacttattaattctaagctga
tgtaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44200588_44201706
seq2: B6Ng01-103N16.b_45_1150

seq1  GAATTCTGTCTTTATTTGAGAGTAGGTTTTTCAAAGGATTTTAAGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTTATTTGAGAGTAGGTTTTTCAAAGGATTTTAAGAATGG  50

seq1  AGTTTTGGACAGAGAATGACTTGTTATTGTATTTCTTTTTCATTTTTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGACAGAGAATGACTTGTTATTGTATTTCTTTTTCATTTTTCGC  100

seq1  TGATCCTAAAAGTCACGGTTAAAGAGAAGTGTGCACAGTATTTCATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTAAAAGTCACGGTTAAAGAGAAGTGTGCACAGTATTTCATTTCA  150

seq1  CTGTTTCCTTTGCCACTCTTGTTAATATTGCCCATCTCCCTCTGCCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTTTGCCACTCTTGTTAATATTGCCCATCTCCCTCTGCCAGTC  200

seq1  CTCAGGAGCTCTTGCAAACACCTTGATCTTAGGCTTCATGCTGAACTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGCTCTTGCAAACACCTTGATCTTAGGCTTCATGCTGAACTAAC  250

seq1  TCATCCCTCCTCCAGTTTCTCTGCTGTCCATATATTCATACAAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTCCTCCAGTTTCTCTGCTGTCCATATATTCATACAAAATATTT  300

seq1  TTTAAAAAATTTAAACTCTTAAAACCATTTTTTTTTTCTTTTACAATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATTTAAACTCTTAAAACCATTTTTTTTTTCTTTTACAATGAT  350

seq1  GGAGAACAAACCTGGGCCCTTGAACTTGTTAGACAAACACTGACTGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAAACCTGGGCCCTTGAACTTGTTAGACAAACACTGACTGCCAA  400

seq1  GCTACACTAGCTGGAGTTGAATATTTTCAAGTGTCAACTTAGCCTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTAGCTGGAGTTGAATATTTTCAAGTGTCAACTTAGCCTCTGTA  450

seq1  CTTCTCAGTTCCTTCAGTTCTTTGTCTTTAAAATCCAGTATTTAAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGTTCCTTCAGTTCTTTGTCTTTAAAATCCAGTATTTAAGGCCC  500

seq1  TGTCCAATTTGGCTGTAACTTAATATTCCAAACTTATCTTTTGGTATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAATTTGGCTGTAACTTAATATTCCAAACTTATCTTTTGGTATTCC  550

seq1  CCTCTCATAAGCTCTGTACTATATCACAGTGGTCTATCGTGAACACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATAAGCTCTGTACTATATCACAGTGGTCTATCGTGAACACATGT  600

seq1  GTTTCCCAAACACCTTTGACTATTTTCATTGCCAAGGAGTAGATTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAAACACCTTTGACTATTTTCATTGCCAAGGAGTAGATTCAGAG  650

seq1  TCATCCAGGAGACACACCTTTATGTGCCTTTGGGGGTTTCCAAAGATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGGAGACACACCTTTATGTGCCTTTGGGGGTTTCCAAAGATGGG  700

seq1  TGACTGAAGAGAGGATCCACATTTAAATATGTAGCATCATCCCATTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAGAGAGGATCCACATTTAAATATGTAGCATCATCCCATTATGG  750

seq1  GCCCAAGAGAAGCAGAAATGGAGAAAGCCAGATGAATACCAAGATTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGAGAAGCAGAAATGGAGAAAGCCAGATGAATACCAAGATTCCCA  800

seq1  TCTGTTTCCTTGTCCACACCAATGTGAGCATCCTTGTGCTCTACAGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCTTGTCCACACCAATGTGAGCATCCTTGTGCTCTACAGTTAA  850

seq1  GAGCTACTCCTGCTCTGGATCTCTACAATAATAGCCCATTATCTCCTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACTCCTGCTCTGGATCTCTACAATAATAGCCCATTATCTCCTAAC  900

seq1  GTACAGCACAATACCTGTCCTCCTTCAGTTGTTTCTTGTCCCAGTGGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCACAATACCTGTCCTCCTTCAGTTGTTTCTTGTCCCAGTGGGGA  950

seq1  GAAAAGTAATTATATACAAAATTGTTATTGCAAGAAGATGCTGCTGTGGT  1000
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GAAAAGTAATTATATAC-AAATTGTTATTGC-AGAAGATGCTGCTGTGGT  998

seq1  GAACATGGTTCATTGGTTTGTGGAATTAATGTTGAGGAGTTTGGATTTGT  1050
      | |||||||||| |||||||||  ||| ||||||||||| ||||||||||
seq2  G-ACATGGTTCA-TGGTTTGTG--ATT-ATGTTGAGGAG-TTGGATTTGT  1042

seq1  AGTCTAGACAGGCCCTAGAATGTTGCTAAGATAGGGAAGCAGAGATTATG  1100
      |||||||||||| ||||||||| |||| ||||| ||| ||||||||||||
seq2  AGTCTAGACAGG-CCTAGAATG-TGCT-AGATA-GGAGGCAGAGATTATG  1088

seq1  GGCCATC-TGGTGGGGGTCC  1119
      |  |||| |||||||||| |
seq2  G--CATCTTGGTGGGGGTTC  1106

seq1: chr15_44353118_44354187
seq2: B6Ng01-103N16.g_68_1129 (reverse)

seq1  TTTTTTTTTACATCAGCTTTAGATTTTAAATAGGTCTATGGTTCACTAAT  50
      ||||||||||||||||| ||||| ||  |||| |||||||  ||||||| 
seq2  TTTTTTTTTACATCAGC-TTAGAATT--AATAAGTCTATG--TCACTAA-  44

seq1  TATGTGCACAGAGATCATATATGCAGAATCAGTCACTGACACCAAATTTC  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATGTGCACAGAGATCATATATGCAG-ATCAGTCACTGACACCAAATTTC  93

seq1  AAACCCAGGAGAGTAAGTGAAGGCATAGGTAAGATGTGTAGGGG-AAAAA  149
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  AAACCCA-GAGAGTAAGTGAAGGCATAGGTAAGATGTGTAGGGGAAAAAA  142

seq1  AAAATCAATGAGTGTGTGTTGGTTTGAATGATAGAGTAAGGATTTAGGGG  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAATCAATGAGTGTGTGTTGG-TTGAATGATAGAGTAAGGATTTAGGGG  191

seq1  CTTTGACAATATGAAAAAAATATTTTTTAATAATTCAGTTAAAACATAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAATATGAAAAAAATATTTTTTAATAATTCAGTTAAAACATAAC  241

seq1  ATGTGCATTAGTGAAGTATGAGATGATCAAGACTACCTTATTGAGAGTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATTAGTGAAGTATGAGATGATCAAGACTACCTTATTGAGAGTTG  291

seq1  CACAGATGCCATCAGTGAAAATATAAAGTGGTTTCTAGTGTTAGAGCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGCCATCAGTGAAAATATAAAGTGGTTTCTAGTGTTAGAGCTTG  341

seq1  GAGTATGTAACTTGGTCAGATAAATATGCAGTCTAGTTTGTGAATGAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGTAACTTGGTCAGATAAATATGCAGTCTAGTTTGTGAATGAAGT  391

seq1  AGAAAAATTAGATTTGAGTCTATAGCAAGAGAACAAGGACAAATTTTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTAGATTTGAGTCTATAGCAAGAGAACAAGGACAAATTTTTGG  441

seq1  TATCTTATCCTTCATCAGTTAGAGAGCCATTTTCCCAGAGCATCTCAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATCCTTCATCAGTTAGAGAGCCATTTTCCCAGAGCATCTCAGCT  491

seq1  GCAACATGAAAATTCACCTTAAAATGCAATAATACAGATGCAGATAAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGAAAATTCACCTTAAAATGCAATAATACAGATGCAGATAAATG  541

seq1  GATCATAAACACTGCAGGACCACTAAATCTCTGCCTTCAGAATTAGATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAAACACTGCAGGACCACTAAATCTCTGCCTTCAGAATTAGATAC  591

seq1  ACTAACCTATACTTAATATGTCAACTTTAAATATCTGAGAATTAACTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCTATACTTAATATGTCAACTTTAAATATCTGAGAATTAACTCTA  641

seq1  ATTCATAACTGAAATGAAACATTTTTAGAATTTTATTTATAGTGATTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAACTGAAATGAAACATTTTTAGAATTTTATTTATAGTGATTCTA  691

seq1  TTTTTCTTCAACCTTTAGAGGTTTTTTTGTTTTGTTTTGTGTGTGTACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCAACCTTTAGAGGTTTTTTTGTTTTGTTTTGTGTGTGTACAG  741

seq1  CCTTGGATATATTTCCCCAGGAATTTTTTTACCATATTTTCTCAGATATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATATATTTCCCCAGGAATTTTTTTACCATATTTTCTCAGATATG  791

seq1  ATTATCTCCCTGGCTAAATCTTGCCAACAAGCCTAGGATGGGAGGTCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCCCTGGCTAAATCTTGCCAACAAGCCTAGGATGGGAGGTCAAG  841

seq1  ACACCACATCTGGCTTCTTTTCACTCTCTATTTCTCTCCTTTATTAATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACATCTGGCTTCTTTTCACTCTCTATTTCTCTCCTTTATTAATGC  891

seq1  GCATTGTAGGGATTGAACTTGGGTTCTCGTGTTTGCAACATAAACATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTAGGGATTGAACTTGGGTTCTCGTGTTTGCAACATAAACATTTA  941

seq1  CTGACTGAATTAGCTCCCCAGCAAAGATAATGGATTTAAGTACTTTATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAATTAGCTCCCCAGCAAAGATAATGGATTTAAGTACTTTATCA  991

seq1  CTTTAATTTTTCTATTTTTTTTCAGAGAATTGAGGGTACAGTTGATATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTTTCTATTTTTTTTCAGAGAATTGAGGGTACAGTTGATATTT  1041

seq1  CTGTCATTACCAATGGAATTC  1070
      |||||||||||||||||||||
seq2  CTGTCATTACCAATGGAATTC  1062