BAC Information

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BAC

Clone NameB6Ng01-105M09
Chromosome15 (Build37)
Map Location 99,592,316 - 99,610,607
singlet/doubletdoublet
Overlap geneLass5, Lima1
Upstream geneArf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik
Downstream geneLOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105M09.bB6Ng01-105M09.g
ACCDH913702DH913703
length9841,083
definitionDH913702|Mus musculus domesticus DNA, BAC clone: B6Ng01-105M09, 5' end.DH913703|Mus musculus domesticus DNA, BAC clone: B6Ng01-105M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,592,316 - 99,593,315)(99,609,520 - 99,610,607)
sequence
gaattccagcacttgggaggcagaggcaggcagatttctgagttcgaggt
cagcctggtctacaaagtgagttcaggacagccagggctacacagagaaa
ccctgtctcgaacccccccaaggcccccccaaaaaggcactggcatgtca
gtatgtaaatgatgcagaaagtatagagtagctcagctactactacttgc
tacagtcaagtgctcaccaggggagctcttggctttataaaccagacaag
ctagtcatctgaggccagcctggaatacaagagaccctgcctcaattcaa
gtaaaacctgaggtttttttaaagctagggagtactgtttatttacttta
catcttaacgctgagtcttcacatttaaaatcctaagagacgggggctgg
agagatggctcagtgggtaagagcaccgactgctcttccaaaggtcctga
gttcaaatctcagcaacacatggtggctcacaaccatctgtaatgagatc
tgactccctcttctggagtgtcagaagacagctacagtgtacttacatat
aataaataaataaatcttaaaaaacaaccaaaaaaaactcccaaaaaaca
aaaacaaaaacccccaaaatataacaaagataaatctaatggaaaaattg
catggacaattatcacagtgggctcatctgtcattccagcactggggtga
gaggaaatcctaagagacatggaataggtagtgattgctgtactagataa
tataattctaattagtctacctaagaaactgagttcatcatttgattttg
gaaataggtatgctaactccttctgcagtatctcagttaatttctctaat
gataaattagatagattctagtactaaatggtcaaaactgtgtagatatt
cttagattagatttatttgctgaattctctggagaaaatccaaattggca
tatctcccttcctctcataaggaagacatttctg
gaattcccgctagcaaaacagggcaaaaacaagcaaaaacaaaacagaca
aacaaactcacccaaaaccaattctaagcgcattgtcaaaacaccagtga
tcttttaagcctggtgtggtggtaaacacctttaatcccagcactccact
cgggaggcagaggcagaggcaggtgggtctctctgagttccaggacagcc
agggctacaaagagaaaccttgcctcaaaacaaacaaacaaacaaatccc
tccattttttcagggaagggctaagtagggatttctctcactgatgctgc
ctgccatccactgcattccccaaatcaagattggtgtggttagatattta
gaggcttgttttcacactacagagaccattgtggaattagagacacacac
aacacatttaggagcccacctcatgaccagaggcactttagtataaaggg
cacagtgtagctattttaccaatttcattttttagtactcaattgctgaa
aatcaaatatttagtctttcaagcttttgaaatgcattctcttcctctgg
tagatagggaaagcttactgtctttcatcctacatcctgtatttttaatc
actgaggcacaaaacagcaacctttggccaagtgaaaggcgctggttact
gaagccggagcagcagtgttcaatccccaaaacctacgtaaaggtgagag
agcagactgcacagagctgtccacacgtgcccatcatcaacaataagaaa
caagttaaaaaaaaaaatacaaccaacctcacaaacacctgcgagacaga
gaaccaacctatatactttggtgtttggagagacggacattgtacccaga
taatcagtggcgaatgccagtgtgtctccctgcactctgggtgtttgcca
tctcttctggtggttctcgcactttgcggaaagctgcagtgttgctgtag
gaccttttggatcacgcttcaccatgcttccagtaaaccaccctgagatc
agaagctgggaagcctcaggcgaagcgaatcttgggtctgaatgtatgat
tttaagcccgatatctttccagggttgcattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99592316_99593315
seq2: B6Ng01-105M09.b_47_1030

seq1  GAATTCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGT  50

seq1  CAGCCTGGTCTACAAAGTGAGTTCAGGACAGCCAGGGCTACACAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAAAGTGAGTTCAGGACAGCCAGGGCTACACAGAGAAA  100

seq1  CCCTGTCTCGAACCCCCCCAAGGCCCCCCCAAAAAGGCACTGGCATGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGAACCCCCCCAAGGCCCCCCCAAAAAGGCACTGGCATGTCA  150

seq1  GTATGTAAATGATGCAGAAAGTATAGAGTAGCTCAGCTACTACTACTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAATGATGCAGAAAGTATAGAGTAGCTCAGCTACTACTACTTGC  200

seq1  TACAGTCAAGTGCTCACCAGGGGAGCTCTTGGCTTTATAAACCAGACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCAAGTGCTCACCAGGGGAGCTCTTGGCTTTATAAACCAGACAAG  250

seq1  CTAGTCATCTGAGGCCAGCCTGGAATACAAGAGACCCTGCCTCAATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATCTGAGGCCAGCCTGGAATACAAGAGACCCTGCCTCAATTCAA  300

seq1  GTAAAACCTGAGGTTTTTTTAAAGCTAGGGAGTACTGTTTATTTACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCTGAGGTTTTTTTAAAGCTAGGGAGTACTGTTTATTTACTTTA  350

seq1  CATCTTAACGCTGAGTCTTCACATTTAAAATCCTAAGAGACGGGGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAACGCTGAGTCTTCACATTTAAAATCCTAAGAGACGGGGGCTGG  400

seq1  AGAGATGGCTCAGTGGGTAAGAGCACCGACTGCTCTTCCAAAGGTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCAGTGGGTAAGAGCACCGACTGCTCTTCCAAAGGTCCTGA  450

seq1  GTTCAAATCTCAGCAACACATGGTGGCTCACAACCATCTGTAATGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCTCAGCAACACATGGTGGCTCACAACCATCTGTAATGAGATC  500

seq1  TGACTCCCTCTTCTGGAGTGTCAGAAGACAGCTACAGTGTACTTACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTCTTCTGGAGTGTCAGAAGACAGCTACAGTGTACTTACATAT  550

seq1  AATAAATAAATAAATCTTAAAAAACAACCAAAAAAAACTCCCAAAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATCTTAAAAAACAACCAAAAAAAACTCCCAAAAAACA  600

seq1  AAAACAAAAACCCCCAAAATATAACAAAGATAAATCTAATGGAAAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACCCCCAAAATATAACAAAGATAAATCTAATGGAAAAATTG  650

seq1  CATGGACAATTATCACAGTGGGCTCATCTGTCATTCCAGCACTGGGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAATTATCACAGTGGGCTCATCTGTCATTCCAGCACTGGGGTGA  700

seq1  GAGGAAATCCTAAGAGACATGGAATAGGTAGTGATTGCTGTACTAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATCCTAAGAGACATGGAATAGGTAGTGATTGCTGTACTAGATAA  750

seq1  TATAATTCTAATTAGTCTACCTAAGAAACTGAGTTCATCATTTGATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCTAATTAGTCTACCTAAGAAACTGAGTTCATCATTTGATTTTG  800

seq1  GAAATAGGTATGCTAACTCCTTTTGCAGTATCTCAGTTAATTTCTCTAAT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAATAGGTATGCTAACTCCTTCTGCAGTATCTCAGTTAATTTCTCTAAT  850

seq1  GATAAAATTAGAATAGATTCAAGTAC-AAATGGTCAAAACTGTGTAGTAT  899
      ||| ||||||| |||||||| ||||| |||||||||||||||||||| ||
seq2  GAT-AAATTAG-ATAGATTCTAGTACTAAATGGTCAAAACTGTGTAG-AT  897

seq1  ATTCTTTAGAAGTAAGATTTTATTTGCCTGAAATATCTCTGGAGAAGAAT  949
      |||| |||||  | ||| |||||||| |||||   ||||||||||  || 
seq2  ATTC-TTAGA--TTAGA-TTTATTTG-CTGAA--TTCTCTGGAGA--AAA  938

seq1  TCAAAATTGGCAGATCTCCCCTTCCCACTCTATAAGGAAGGTACATTTCT  999
      || ||||||||| |||||||  | || ||| |||||||||  ||||||||
seq2  TCCAAATTGGCATATCTCCC--TTCCTCTC-ATAAGGAAG--ACATTTCT  983

seq1  G  1000
      |
seq2  G  984

seq1: chr15_99609520_99610607
seq2: B6Ng01-105M09.g_69_1151 (reverse)

seq1  TTAATGCAACCCTGGAAGAATTATCTGGCCTAAAAATCAATACATTTCAG  50
      ||||||||||||||||| |  |||| || || |||||| ||||| |||||
seq2  TTAATGCAACCCTGGAA-AGATATC-GGGCTTAAAATC-ATACA-TTCAG  46

seq1  AGCCAAGATTCGCCTCGACCTGAGGCTTCCCAGC-TCTGATCTCAGGTTG  99
      | ||||||||||| ||| |||||||||||||||| |||||||||||| ||
seq2  ACCCAAGATTCGCTTCG-CCTGAGGCTTCCCAGCTTCTGATCTCAGGGTG  95

seq1  TTTTACTTGGAGCATGGTGAAGCGTGATCCAAAAGGTCTTACAGCAACAC  149
       |||||| | |||||||||||||||||||||||||||| |||||||||||
seq2  GTTTACTGGAAGCATGGTGAAGCGTGATCCAAAAGGTCCTACAGCAACAC  145

seq1  TGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGATGGCAAACACC  199
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCAGCTTTCCGCAAAGTGCGAG-AACCACCAGAAGAGATGGCAAACACC  194

seq1  CAGAGTGCAGGGAGACACACTGGCATTCGCCACTGATTATCTGGGTACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCAGGGAGACACACTGGCATTCGCCACTGATTATCTGGGTACAA  244

seq1  TGTCCGTCTCTCCAAACACCAAAGTATATAGGTTGGTTCTCTGTCTCGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTCTCTCCAAACACCAAAGTATATAGGTTGGTTCTCTGTCTCGCA  294

seq1  GGTGTTTGTGAGGTTGGTTGTATTTTTTTTTTTAACTTGTTTCTTATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGTGAGGTTGGTTGTATTTTTTTTTTTAACTTGTTTCTTATTGT  344

seq1  TGATGATGGGCACGTGTGGACAGCTCTGTGCAGTCTGCTCTCTCACCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGGGCACGTGTGGACAGCTCTGTGCAGTCTGCTCTCTCACCTTT  394

seq1  ACGTAGGTTTTGGGGATTGAACACTGCTGCTCCGGCTTCAGTAACCAGCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGTTTTGGGGATTGAACACTGCTGCTCCGGCTTCAGTAACCAGCG  444

seq1  CCTTTCACTTGGCCAAAGGTTGCTGTTTTGTGCCTCAGTGATTAAAAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACTTGGCCAAAGGTTGCTGTTTTGTGCCTCAGTGATTAAAAATA  494

seq1  CAGGATGTAGGATGAAAGACAGTAAGCTTTCCCTATCTACCAGAGGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTAGGATGAAAGACAGTAAGCTTTCCCTATCTACCAGAGGAAGA  544

seq1  GAATGCATTTCAAAAGCTTGAAAGACTAAATATTTGATTTTCAGCAATTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATTTCAAAAGCTTGAAAGACTAAATATTTGATTTTCAGCAATTG  594

seq1  AGTACTAAAAAATGAAATTGGTAAAATAGCTACACTGTGCCCTTTATACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTAAAAAATGAAATTGGTAAAATAGCTACACTGTGCCCTTTATACT  644

seq1  AAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTC  694

seq1  TAATTCCACAATGGTCTCTGTAGTGTGAAAACAAGCCTCTAAATATCTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCACAATGGTCTCTGTAGTGTGAAAACAAGCCTCTAAATATCTAA  744

seq1  CCACACCAATCTTGATTTGGGGAATGCAGTGGATGGCAGGCAGCATCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCAATCTTGATTTGGGGAATGCAGTGGATGGCAGGCAGCATCAGT  794

seq1  GAGAGAAATCCCTACTTAGCCCTTCCCTGAAAAAATGGAGGGATTTGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATCCCTACTTAGCCCTTCCCTGAAAAAATGGAGGGATTTGTTT  844

seq1  GTTTGTTTGTTTTGAGGCAAGGTTTCTCTTTGTAGCCCTGGCTGTCCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTGAGGCAAGGTTTCTCTTTGTAGCCCTGGCTGTCCTGG  894

seq1  AACTCAGAGAGACCCACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGAGACCCACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCT  944

seq1  GGGATTAAAGGTGTTTACCACCACACCAGGCTTAAAAGATCACTGGTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGTGTTTACCACCACACCAGGCTTAAAAGATCACTGGTGTT  994

seq1  TTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTTG  1044

seq1  TTTTTGCTTGTTTTTGCCCTGTTTTGCTAGCGGGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTGTTTTTGCCCTGTTTTGCTAGCGGGAATTC  1083