BAC Information

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BAC

Clone NameB6Ng01-108F17
Chromosome15 (Build37)
Map Location 51,092,967 - 51,197,330
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108F17.bB6Ng01-108F17.g
ACCDH915563DH915564
length1,118866
definitionDH915563|Mus musculus domesticus DNA, BAC clone: B6Ng01-108F17, 5' end.DH915564|Mus musculus domesticus DNA, BAC clone: B6Ng01-108F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,092,967 - 51,094,102)(51,196,468 - 51,197,330)
sequence
gaattcttcaatgttgtctaaagctgaaatagatttgaaataagagtaca
attccattctgacttcacttaggactgtggctcaattctaagaaaaacaa
ttacatttcatgttttattttccaatgtattattatgctaggctctagaa
gagaatgccttccaatttactaagtgctaggtattaattgactggtttat
gtccataaattggatgaaataaatatgatgttcacttttgaggtcacttt
tggtcaacacattataagacaagcactagccattacatattttgttttta
atgccagttacctgaaaatggttgatcattcatatgatgagcctatataa
gcaagagagtgcatactattatcacaatccaggtgagatattaaagggct
tgaagcccttggatggtagtttaaaggatatgtgataaaacatattcaaa
aaacctttgagaaaaaggagaacaggatttgataatgattcatatgtgac
attgagagaacagatttcaggatgattctaaagatattgaaagcgtaaga
tatgaggagtgagggactaaaagtggatcttagagatcagttttaaacaa
gttcatactaaggtgattgttcaacattacaattagaaatatctgacatg
cattaaataaaaatagcctcaataaaaaggggagaataggagctatattg
tcaacaggaagttaccatatatggggtgacatttagttctctaaactgga
taataaacgatgcttctgccatagacatattaaacttactagatttacta
gaactcaatcttattcccaatgacatataagttattgaaagaaataaact
tccaacaacttcctgaagacaatataaaggaaagtagagcaaccaaactg
tagaaaggtgtctagatgaagatgtaaatgtcactcagtagagggtgtgc
tgagctatacaaaattactagattcacccaagtaccacaaaagaccagag
gaaaagaaggagaggaaagtgatcaaacagaagcactgtgcgtgacccgc
acaaaatagtcagatccttaggagtctccatcagtatctactgagtagtt
cgtgtctgcagtccaaaa
gaattcacagctgagaaagagcaaaataaaaatggagtctgcacctaaag
atggtgatttatatatattcactgcagttcatttcccaattgaagcttta
attgctcatacaataagacaaacatagttaccctcagaacttaaagtcag
tcctattcacaattatgcctaaacattgataaatccacatgaaatctgat
agaaatcaccacatttgaattatttttagatagctggtaactacaaccag
gtccttttcactttttttctccttgtgtttagcttacccaccacatcatg
ggtttttttttttttcatccctggaagtaataaaattgttcagatgggat
ttcagacatatcaagttgggaacaaatatttttatatagtgcttcctatt
caggaaatatattcccaagttgcaaaaatttttcaaaagttttttttaaa
aaaaatgcaaccacagcttcctagacagagactgtcaacacaagatagat
gaatgaacatgtttgaaaaggataaaacttcattatcaagaagcacaggc
tataccctagttcttcaacctcaccagccagaggaatcttcatttctttt
tctcctaggaggacatgggaagtggtgaaggcaaatgggtcattattcta
agcaacaacaggcaaaaacaaactttccagattttctactccacatcctt
attgggaataaaatcatctttcttcaaaagaaaatagattgcacttattg
ttgtatttattcaagactcagaaattcagtttgtatctctctctggaaaa
gtgtttgtagattgatttaatgtaagtttcccagggctagtaccagtgct
ccaaagctatccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51092967_51094102
seq2: B6Ng01-108F17.b_48_1165

seq1  GAATTCTTCAATGTTGTCTAAAGCTGAAATAGATTTGAAATAAGAGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAATGTTGTCTAAAGCTGAAATAGATTTGAAATAAGAGTACA  50

seq1  ATTCCATTCTGACTTCACTTAGGACTGTGGCTCAATTCTAAGAAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTCTGACTTCACTTAGGACTGTGGCTCAATTCTAAGAAAAACAA  100

seq1  TTACATTTCATGTTTTATTTTCCAATGTATTATTATGCTAGGCTCTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCATGTTTTATTTTCCAATGTATTATTATGCTAGGCTCTAGAA  150

seq1  GAGAATGCCTTCCAATTTACTAAGTGCTAGGTATTAATTGACTGGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGCCTTCCAATTTACTAAGTGCTAGGTATTAATTGACTGGTTTAT  200

seq1  GTCCATAAATTGGATGAAATAAATATGATGTTCACTTTTGAGGTCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAAATTGGATGAAATAAATATGATGTTCACTTTTGAGGTCACTTT  250

seq1  TGGTCAACACATTATAAGACAAGCACTAGCCATTACATATTTTGTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAACACATTATAAGACAAGCACTAGCCATTACATATTTTGTTTTTA  300

seq1  ATGCCAGTTACCTGAAAATGGTTGATCATTCATATGATGAGCCTATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTTACCTGAAAATGGTTGATCATTCATATGATGAGCCTATATAA  350

seq1  GCAAGAGAGTGCATACTATTATCACAATCCAGGTGAGATATTAAAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAGTGCATACTATTATCACAATCCAGGTGAGATATTAAAGGGCT  400

seq1  TGAAGCCCTTGGATGGTAGTTTAAAGGATATGTGATAAAACATATTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCTTGGATGGTAGTTTAAAGGATATGTGATAAAACATATTCAAA  450

seq1  AAACCTTTGAGAAAAAGGAGAACAGGATTTGATAATGATTCATATGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTGAGAAAAAGGAGAACAGGATTTGATAATGATTCATATGTGAC  500

seq1  ATTGAGAGAACAGATTTCAGGATGATTCTAAAGATATTGAAAGCGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGAACAGATTTCAGGATGATTCTAAAGATATTGAAAGCGTAAGA  550

seq1  TATGAGGAGTGAGGGACTAAAAGTGGATCTTAGAGATCAGTTTTAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGAGTGAGGGACTAAAAGTGGATCTTAGAGATCAGTTTTAAACAA  600

seq1  GTTCATACTAAGGTGATTGTTCAACATTACAATTAGAAATATCTGACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATACTAAGGTGATTGTTCAACATTACAATTAGAAATATCTGACATG  650

seq1  CATTAAATAAAAATAGCCTCAATAAAAAGGGGAGAATAGGAGCTATATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATAAAAATAGCCTCAATAAAAAGGGGAGAATAGGAGCTATATTG  700

seq1  TCAACAGGAAGTTACCATATATGGGGTGACATTTAGTTCTCTAAACTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGAAGTTACCATATATGGGGTGACATTTAGTTCTCTAAACTGGA  750

seq1  TAATAAACGATGCTTCTGCCATAGACATATTAAACTTACTAGATTTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACGATGCTTCTGCCATAGACATATTAAACTTACTAGATTTACTA  800

seq1  GAACTCAATCTTATTCCCAATGACATATAAGTTATTGAAAGAAATAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAATCTTATTCCCAATGACATATAAGTTATTGAAAGAAATAAACT  850

seq1  TCCAACAACTTCCTGAAGACAATATAAAGGAAAGTAGAGCAACCAAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAACTTCCTGAAGACAATATAAAGGAAAGTAGAGCAACCAAACTG  900

seq1  TAGAAAGGTGTCTAGATGAAGATGTAAATGTCACTCAGTAGAGGGTGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGTGTCTAGATGAAGATGTAAATGTCACTCAGTAGAGGGTGTGC  950

seq1  TGAGCTATACAAAAATTACTAGATTCAACCCAAAGTACCACAAAAGAACC  1000
      |||||||||| ||||||||||||||||  || |||||||||||||| |||
seq2  TGAGCTATAC-AAAATTACTAGATTCA--CCCAAGTACCACAAAAG-ACC  996

seq1  AGAGGAAAAGGAAAAGGAGGAGGAAAGTGATCAAAACAAGAAAAGCAACT  1050
      ||||||||||   ||||| ||||||||||||||    || | |||| |||
seq2  AGAGGAAAAG---AAGGA-GAGGAAAGTGATCA----AACAGAAGC-ACT  1037

seq1  GTGCGTGGACACGCACAAAAATAGTCAGATCCTTTAGGAGTCTCCATCCA  1100
      |||||| ||| ||||| ||||||||||||||| |||||||||||||||  
seq2  GTGCGT-GACCCGCAC-AAAATAGTCAGATCC-TTAGGAGTCTCCATC--  1082

seq1  AGTATCTACTGAGTAGTCAGTGTCTGCAGTCCAAAA  1136
      |||||||||||||||||  |||||||||||||||||
seq2  AGTATCTACTGAGTAGTTCGTGTCTGCAGTCCAAAA  1118

seq1: chr15_51196468_51197330
seq2: B6Ng01-108F17.g_66_931 (reverse)

seq1  AGATGGATAGCTTTGGAGCACTGGGTACTTAGCCCTGGGAAACTTACA-T  49
      ||| |||||||||||||||||| ||||| ||||||||||||||||||| |
seq2  AGAAGGATAGCTTTGGAGCACT-GGTAC-TAGCCCTGGGAAACTTACATT  48

seq1  CAATCATTCTACAAACACTTTTCCAGAGAGAGATAC-AACTGAATTTCTG  98
       ||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATCAATCTACAAACACTTTTCCAGAGAGAGATACAAACTGAATTTCTG  98

seq1  AGTCTTGAATAAGTACAACAATAAGTGCAATCTATTTTCTTTTGAAG-AA  147
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AGTCTTGAATAAATACAACAATAAGTGCAATCTATTTTCTTTTGAAGAAA  148

seq1  GATGATTTTATTCCCAATAAGGATGTGGAGTAGAAAATCTGGAAAGTTTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTATTCCCAATAAGGATGTGGAGTAGAAAATCTGGAAAGTTTG  198

seq1  TTTTTG-CTGTTGTTGCTTAGAATAATGACCCATTTGCCTTCACCACTTC  246
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTGTTGTTGCTTAGAATAATGACCCATTTGCCTTCACCACTTC  248

seq1  CCATGTCCTCCTAGGAGAAAAAG-AATGAAGATTCCTCTGGCTGGTGAGG  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCATGTCCTCCTAGGAGAAAAAGAAATGAAGATTCCTCTGGCTGGTGAGG  298

seq1  TTGAAGAACTAGGGTATAGCCTGTGCTTCTTGATAATGAAGTTTTATCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACTAGGGTATAGCCTGTGCTTCTTGATAATGAAGTTTTATCCT  348

seq1  TTTCAAACATGTTCATTCATCTATCTTGTGTTGACAGTCTCTGTCTAGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACATGTTCATTCATCTATCTTGTGTTGACAGTCTCTGTCTAGGA  398

seq1  AGCTGTGGTTGCATTTTTTTTAAAAAAAACTTTTGAAAAATTTTTGCAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGTTGCATTTTTTTTAAAAAAAACTTTTGAAAAATTTTTGCAAC  448

seq1  TTGGGAATATATTTCCTGAATAGGAAGCACTATATAAAAATATTTGTTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATATATTTCCTGAATAGGAAGCACTATATAAAAATATTTGTTCC  498

seq1  CAACTTGATATGTCTGAAATCCCATCTGAACAATTTTATTACTTCCAGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGATATGTCTGAAATCCCATCTGAACAATTTTATTACTTCCAGGG  548

seq1  ATGAAAAAAAAAAAAACCCATGATGTGGTGGGTAAGCTAAACACAAGGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAAAAAAACCCATGATGTGGTGGGTAAGCTAAACACAAGGAG  598

seq1  AAAAAAAGTGAAAAGGACCTGGTTGTAGTTACCAGCTATCTAAAAATAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTGAAAAGGACCTGGTTGTAGTTACCAGCTATCTAAAAATAAT  648

seq1  TCAAATGTGGTGATTTCTATCAGATTTCATGTGGATTTATCAATGTTTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTGGTGATTTCTATCAGATTTCATGTGGATTTATCAATGTTTAG  698

seq1  GCATAATTGTGAATAGGACTGACTTTAAGTTCTGAGGGTAACTATGTTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTGTGAATAGGACTGACTTTAAGTTCTGAGGGTAACTATGTTTG  748

seq1  TCTTATTGTATGAGCAATTAAAGCTTCAATTGGGAAATGAACTGCAGTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGTATGAGCAATTAAAGCTTCAATTGGGAAATGAACTGCAGTGA  798

seq1  ATATATATAAATCACCATCTTTAGGTGCAGACTCCATTTTTATTTTGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAAATCACCATCTTTAGGTGCAGACTCCATTTTTATTTTGCTC  848

seq1  TTTCTCAGCTGTGAATTC  863
      ||||||||||||||||||
seq2  TTTCTCAGCTGTGAATTC  866