BAC Information

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BAC

Clone NameB6Ng01-110A03
Chromosome14 (Build37)15 (Build37)
Map Location 36,720,371 - 36,720,58645,105,047 - 45,106,119
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277
Downstream geneLOC665933, 4930474N05Rik, Gcap14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A03.bB6Ng01-110A03.g
ACCDH916757DH916758
length9561,064
definitionDH916757|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A03, 5' end.DH916758|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,720,371 - 36,720,586)(45,105,047 - 45,106,119)
sequence
gaattcagtttttgagaattttattgagtatttttgcatctatattcata
agggaaattggtctgaagttttctttctttgttgggtctttgtgtggttt
aggtatcagagtaattgtggcctcatagagtgaattgggtagagtacgtt
tctattttgtggaatagtttgaggaatattggaattatgacttctttgaa
gtcctaatagaactctgtactaaacccatctgatcctgggcttttttttt
tttttttggttctgagactgttaatgactttttctatttctttaggggat
ataggacagtttagatcgttaatcttatcctgatttaactttggtaccag
tatctttctagaaaattgtttatttcgtccagattttccagtattattga
gtatgggctttggtagtaggaactgatgattttttggatttcatcagatt
ctgatattatgtctttttcatttctgattttgttaattgggatactgtcc
ttttgccctctagttactctgggtaagtgttaatctatcttgttgatttt
ctcaaagaaccagctactggtttggttgattctttatatagttctttttt
attccacttggttgattttagccctgagttcgattatttcctgtatctac
tcctcttgagtgaattggcttccttttatctaggaactttatgtgtgcca
tcaatctgctagtgtatgttttctccagtttctttttgcagcactaagag
ctatgagttgtcctcttatgactgttttcattgtgtcccataagtttggg
tatgttgtgatttcattttcattaaactctagaaagtcttttttttcttt
ctttatttcttccttgaccaagttattattgactagagtgttcttcagtt
tcaagtgtatgtgggctttctgttatttatgtgtattgagatcaccctta
gtccac
gaattcaaggctgcaattttaaatgtacacattggcttatataatacaat
tcagtaattttccaatatgccagaacttatgtgattgattctaaggagag
ccgatatgtttattaaccattccttgactctgacaaagaaaatacatggg
agctgcagtcacagctctgcaaataaaatcaatatagtgacaggtttact
ttggaaaggaaaatcaaacctttcatagagctagagttggtagaacagaa
attggaagataatcctgctaaatccatacgaaactggaaggtgaaatcta
agcaataaaaaacagtaatcagttcctttatgatgtagtagttcctttgt
ttgatcacaggagagcactgttcatctatgaaacattttgtttaaggaga
ataagtagagcttttgtggtacagagatttgctgtggcaaattacacaga
ccttattactgagtaataaccataaaaaataactcatagaaaaatggata
gatatatacaagatgatgtaagctgtcagtgtacttatcttaaatcaact
ggaaaggatacatgtatgtgaatgtgtttcatatagaattgcaagaaccc
tgaatgatcccaataatacacaaaacacatttttttttcagaaagatgac
tagctacaatataatttattttttgttgttttgtttaaaaaagaataaca
attaatctgaagccaataaaattagcataaaaatattaagcagatgaaag
tgtcagtatatctcaagatatgcaagtgttctgtatggtctgtgtgtttt
acttaaacaggtaacatggtaaaaatagtatttcacactatgtcttgctt
tgcaagactcagttggttttttgaaaagatgaaaatattttgagaaacac
ataattaataagaggtttgtttaacatattaaaagttatttacatgcaat
atttatcttagtttatttatatcattagttaggtggttatatttactaca
ttatcaataatcatacatggagtccaagcagaaaatattgctttatttat
ccctttcacattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_36720371_36720586
seq2: B6Ng01-110A03.b_59_269 (reverse)

seq1  TTTAGTGCAGAGTTCTATCAGAACTTCAAAGAAGATCTAATTCCAGTTCT  50
      |||||| ||||||||||| || ||||||||||||   |||||||| |  |
seq2  TTTAGTACAGAGTTCTATTAGGACTTCAAAGAAGTCATAATTCCAATATT  50

seq1  GCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTCTACCCAATTCAT  100
       | |||||||||||||||||||||     || ||||||||||||||||| 
seq2  CCTCAAACTATTCCACAAAATAGA-----AACGTACTCTACCCAATTCAC  95

seq1  TCTATGAAGCCACAATTACTCTGAGACCTAAACCACAGAAAGAACCAACA  150
      ||||||| |||||||||||||||| |||||||||||| ||||| ||||||
seq2  TCTATGAGGCCACAATTACTCTGATACCTAAACCACACAAAGACCCAACA  145

seq1  AAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAAT  200
      |||| ||| ||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAAAGAAAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAAT  195

seq1  ACTCAATAAAATTCTC  216
      ||||||||||||||||
seq2  ACTCAATAAAATTCTC  211

seq1: chr15_45105047_45106119
seq2: B6Ng01-110A03.g_65_1128

seq1  GAATTCAAGGCTGCAATTTTAAATGTACACATTGGCTTATATAATACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTGCAATTTTAAATGTACACATTGGCTTATATAATACAAT  50

seq1  TCAGTAATTTTCCAATATGCCAGAACTTATGTGATTGATTCTAAGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATTTTCCAATATGCCAGAACTTATGTGATTGATTCTAAGGAGAG  100

seq1  CCGATATGTTTATTAACCATTCCTTGACTCTGACAAAGAAAATACATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATATGTTTATTAACCATTCCTTGACTCTGACAAAGAAAATACATGGG  150

seq1  AGCTGCAGTCACAGCTCTGCAAATAAAATCAATATAGTGACAGGTTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGTCACAGCTCTGCAAATAAAATCAATATAGTGACAGGTTTACT  200

seq1  TTGGAAAGGAAAATCAAACCTTTCATAGAGCTAGAGTTGGTAGAACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGGAAAATCAAACCTTTCATAGAGCTAGAGTTGGTAGAACAGAA  250

seq1  ATTGGAAGATAATCCTGCTAAATCCATACGAAACTGGAAGGTGAAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGATAATCCTGCTAAATCCATACGAAACTGGAAGGTGAAATCTA  300

seq1  AGCAATAAAAAACAGTAATCAGTTCCTTTATGATGTAGTAGTTCCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAAAAACAGTAATCAGTTCCTTTATGATGTAGTAGTTCCTTTGT  350

seq1  TTGATCACAGGAGAGCACTGTTCATCTATGAAACATTTTGTTTAAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACAGGAGAGCACTGTTCATCTATGAAACATTTTGTTTAAGGAGA  400

seq1  ATAAGTAGAGCTTTTGTGGTACAGAGATTTGCTGTGGCAAATTACACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGAGCTTTTGTGGTACAGAGATTTGCTGTGGCAAATTACACAGA  450

seq1  CCTTATTACTGAGTAATAACCATAAAAAATAACTCATAGAAAAATGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTACTGAGTAATAACCATAAAAAATAACTCATAGAAAAATGGATA  500

seq1  GATATATACAAGATGATGTAAGCTGTCAGTGTACTTATCTTAAATCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATACAAGATGATGTAAGCTGTCAGTGTACTTATCTTAAATCAACT  550

seq1  GGAAAGGATACATGTATGTGAATGTGTTTCATATAGAATTGCAAGAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATACATGTATGTGAATGTGTTTCATATAGAATTGCAAGAACCC  600

seq1  TGAATGATCCCAATAATACACAAAACACATTTTTTTTTCAGAAAGATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATCCCAATAATACACAAAACACATTTTTTTTTCAGAAAGATGAC  650

seq1  TAGCTACAATATAATTTATTTTTTGTTGTTTTGTTTAAAAAAGAATAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAATATAATTTATTTTTTGTTGTTTTGTTTAAAAAAGAATAACA  700

seq1  ATTAATCTGAAGCCAATAAAATTAGCATAAAAATATTAAGCAGATGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTGAAGCCAATAAAATTAGCATAAAAATATTAAGCAGATGAAAG  750

seq1  TGTCAGTATATCTCAAGATATGCAAGTGTTCTGTATGGTCTGTGTGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTATATCTCAAGATATGCAAGTGTTCTGTATGGTCTGTGTGTTTT  800

seq1  ACTTAAACAGGTAACATGGTAAAAATAGTATTTCACACTATGTCTTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACAGGTAACATGGTAAAAATAGTATTTCACACTATGTCTTGCTT  850

seq1  TGCAAGACTCAGTTGGTTTTTTGAAAAGATGAAAATATTTTGAGAAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGACTCAGTTGGTTTTTTGAAAAGATGAAAATATTTTGAGAAACAC  900

seq1  ATAATTAATAAGAGGTTTGTTTAACATATTAAAAGGTTATTTACATGCAA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAATTAATAAGAGGTTTGTTTAACATATTAAAA-GTTATTTACATGCAA  949

seq1  TATTATCCTTAGGTTTATTTATATCAATTAGTTAAGGATGTTATA-TTAC  999
      ||||   |||| ||||||||||||| ||||||| |||  |||||| ||||
seq2  TATTTATCTTA-GTTTATTTATATC-ATTAGTT-AGGTGGTTATATTTAC  996

seq1  TACATTATCAATAAATCAATACATGTAGTCCAAGCAGAAAATAATTGCTT  1049
      |||||||||||| |||| ||||||| |||||||||||||||| |||||||
seq2  TACATTATCAAT-AATC-ATACATGGAGTCCAAGCAGAAAAT-ATTGCTT  1043

seq1  TAAATTTAT-CCTTTCAAACATTGT  1073
      |  |||||| ||||||  |||||||
seq2  T--ATTTATCCCTTTC--ACATTGT  1064