BAC Information

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BAC

Clone NameB6Ng01-116E05
Chromosome15 (Build37)
Map Location 75,286,353 - 75,427,332
singlet/doubletdoublet
Overlap geneLy6h, Gpihbp1
Upstream geneBai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik
Downstream geneZfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116E05.bB6Ng01-116E05.g
ACCDH921304DH921305
length1,1381,070
definitionDH921304|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E05, 5' end.DH921305|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,426,184 - 75,427,332)(75,286,353 - 75,287,435)
sequence
gaattccccccacccccacccctgcagtgccgaagcagccaagcctgcag
aagagaagagccccaggccttctatcttactcctcaggtctattccttgt
ccctaggataaggggtgcctggaggtactcatgggtaaggactgggccat
cccttcttgaggcgacccgcacctggctgtccacttagtagcaagatcag
gaggacagccctgagagccttcatcctggctcaggctgttctgtctactg
gcgcagtcctcactcggggttctgagtctgcagtaagtgggacataggac
attcctgggggcttcctgtggcccccaccagctctaatcttaaacaatgg
gtctcgcattggtctccagctacaggcaccaggccagggacatcatttcc
ctccagaacctccggggatagagaggaaagggaagctattatattggcct
tgggtgtcctggtcacctgagctgtttctgagctggtggggactacaaaa
ggtgagtggtggcctcaggagccacctggtcttgtcctggctctttacac
ctccaggcctcggcattatcatgctcaatgtgggcctggttctaggctgc
atcagcacctatctcaaacctctggggagcctggcttcacagccacaggg
gctcaggactctatttgagggtcacaggccaggcaccttcctcccgagcg
gagtcattctgcagagtatttaggaaagaacatggtctgtccagctgcag
ccccaagaaccattcttctcctcacctcctgtctgtgatcttgttcgccc
aggctcctgctgctccggcctcttcctccttagacaggtagctcccttag
taacccgcttccccttcagtctctctttatgagttacctccccagaggcc
tccctactgctcacatgtttctgggatatctaccccctcacccccgatat
tacagcctctgacccctctggggttctctgcccttgatagcctacagaat
gtaagtccctcatccctgggctctgcacttaggtaggtgtgacttagaga
aagagagctttctaggactggcttctgctgcaactcccagccactgctcc
cctccccccggcccaccaggtacactgtgtggagccct
gaattcttaagggtagagatcaccaaggtcctgctctgaatttaagaggc
tggagctggacaagctagtgagatggaacctagaggaggtgtgggcagca
ggagtcagagaatgaggaggagccaaacagggttaaagaagaattaagtt
catattttaaattttgtgattttgataattgcaccatagttatatgaaat
gtcagtgtttgtaaaatgaacagaaggagttccgaataattactcttctt
tgggtttattttccaacactttagttttggttttagagtcagggtgtcat
atagccaaggccggtcttgaacctctgatcctctgcctccacccgaatgc
tggggttatgagcatgggtttctgcattcagctttttaagcaactcacta
tttaaatacatctaagattatttcaaaataaaagaatgaacccctcaact
gaatattattattcttcctgataagtatggatcccaggattccacataga
agccagatttttatcactcatcccttcaaactaccttacagatgttctcc
tgggaaatgtgttgaatttgagaaattgcagctgcctttttcagtattaa
tttccaacttaaagctcagaggcgataagatctggacactttgaatggaa
gcagtgaactggaaggtcaccaccgagtatcctcttcacagacctgactg
agtgccaggggcattcagtcacctgcacagtgagggcctgaagggcccac
ctgatcagttttgctttttgtttttgtttgtgtgtgtgttgtgaatatga
attttgataaaaagcaaactgccctcagggtcctcaatccttggccccac
cccctcaggcctgggtaggaggcactgcttgacctcatgcagacacaccc
ttacttaggtggactaggaacccaaattcagttagagccccattggagtg
gaggaggttctgggctggttctaggtgctgttgactctgctgttctcatc
aggccccagggggtgagcttagaactcagaagcttcctggaacctctttc
ctcttcaggccaagcaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75426184_75427332
seq2: B6Ng01-116E05.b_46_1183 (reverse)

seq1  AGGGCT-CACACAGTGTACACTGGTGGGGGCCGGGGGGAGGGGAGACAGT  49
      |||||| |||||||||||| |||||  |||||||||||||||||| ||||
seq2  AGGGCTCCACACAGTGTAC-CTGGT--GGGCCGGGGGGAGGGGAG-CAGT  46

seq1  GGCTGGGAGTTTGCCAGGCAGAAGCCAGTCCCAGAAAGCTCTCTGTCTCT  99
      ||||||||| ||||   |||||||||||||| |||||||||||| |||||
seq2  GGCTGGGAG-TTGC--AGCAGAAGCCAGTCCTAGAAAGCTCTCTTTCTCT  93

seq1  AAGTCAACACCTACCTAGGTGCAGAGGCCCAGGGATGAGGGGACTTACAT  149
      ||||| ||||||||||| ||||||| |||||||||||| |||||||||||
seq2  AAGTC-ACACCTACCTAAGTGCAGA-GCCCAGGGATGA-GGGACTTACAT  140

seq1  TCTGTAGGCTTATCAAGGGCAGAGGAACCCCAGAGGGGTCAGAGGCTGTA  199
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGTAGGC-TATCAAGGGCAGA-GAACCCCAGAGGGGTCAGAGGCTGTA  188

seq1  ATATCGGGGGGTGAGGGGGTAGATAT-CCAGAAACATGTGAGCAGTAGGG  248
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  ATATC-GGGGGTGAGGGGGTAGATATCCCAGAAACATGTGAGCAGTAGGG  237

seq1  AGGCCTCTGGGGAGGTAACTCATAAAGAGAGACTGAAGGGGAAGCGGGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTGGGGAGGTAACTCATAAAGAGAGACTGAAGGGGAAGCGGGTT  287

seq1  ACTAAGGGAGCTACCTGTCTAAGGAGGAAGAGGCCGGAGCAGCAGGAGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGAGCTACCTGTCTAAGGAGGAAGAGGCCGGAGCAGCAGGAGCC  337

seq1  TGGGCGAACAAGATCACAGACAGGAGGTGAGGAGAAGAATGGTTCTTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGAACAAGATCACAGACAGGAGGTGAGGAGAAGAATGGTTCTTGGG  387

seq1  GCTGCAGCTGGACAGACCATGTTCTTTCCTAAATACTCTGCAGAATGACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCTGGACAGACCATGTTCTTTCCTAAATACTCTGCAGAATGACT  437

seq1  CCGCTCGGGAGGAAGGTGCCTGGCCTGTGACCCTCAAATAGAGTCCTGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCGGGAGGAAGGTGCCTGGCCTGTGACCCTCAAATAGAGTCCTGAG  487

seq1  CCCCTGTGGCTGTGAAGCCAGGCTCCCCAGAGGTTTGAGATAGGTGCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGGCTGTGAAGCCAGGCTCCCCAGAGGTTTGAGATAGGTGCTGA  537

seq1  TGCAGCCTAGAACCAGGCCCACATTGAGCATGATAATGCCGAGGCCTGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTAGAACCAGGCCCACATTGAGCATGATAATGCCGAGGCCTGGA  587

seq1  GGTGTAAAGAGCCAGGACAAGACCAGGTGGCTCCTGAGGCCACCACTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAAGAGCCAGGACAAGACCAGGTGGCTCCTGAGGCCACCACTCAC  637

seq1  CTTTTGTAGTCCCCACCAGCTCAGAAACAGCTCAGGTGACCAGGACACCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAGTCCCCACCAGCTCAGAAACAGCTCAGGTGACCAGGACACCC  687

seq1  AAGGCCAATATAATAGCTTCCCTTTCCTCTCTATCCCCGGAGGTTCTGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAATATAATAGCTTCCCTTTCCTCTCTATCCCCGGAGGTTCTGGA  737

seq1  GGGAAATGATGTCCCTGGCCTGGTGCCTGTAGCTGGAGACCAATGCGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGATGTCCCTGGCCTGGTGCCTGTAGCTGGAGACCAATGCGAGA  787

seq1  CCCATTGTTTAAGATTAGAGCTGGTGGGGGCCACAGGAAGCCCCCAGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTTTAAGATTAGAGCTGGTGGGGGCCACAGGAAGCCCCCAGGAA  837

seq1  TGTCCTATGTCCCACTTACTGCAGACTCAGAACCCCGAGTGAGGACTGCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTATGTCCCACTTACTGCAGACTCAGAACCCCGAGTGAGGACTGCG  887

seq1  CCAGTAGACAGAACAGCCTGAGCCAGGATGAAGGCTCTCAGGGCTGTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGACAGAACAGCCTGAGCCAGGATGAAGGCTCTCAGGGCTGTCCT  937

seq1  CCTGATCTTGCTACTAAGTGGACAGCCAGGTGCGGGTCGCCTCAAGAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTTGCTACTAAGTGGACAGCCAGGTGCGGGTCGCCTCAAGAAGG  987

seq1  GATGGCCCAGTCCTTACCCATGAGTACCTCCAGGCACCCCTTATCCTAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCCAGTCCTTACCCATGAGTACCTCCAGGCACCCCTTATCCTAGG  1037

seq1  GACAAGGAATAGACCTGAGGAGTAAGATAGAAGGCCTGGGGCTCTTCTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGAATAGACCTGAGGAGTAAGATAGAAGGCCTGGGGCTCTTCTCT  1087

seq1  TCTGCAGGCTTGGCTGCTTCGGCACTGCAGGGGTGGGGGTGGGGGGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGCTTGGCTGCTTCGGCACTGCAGGGGTGGGGGTGGGGGGAATT  1137

seq1  C  1149
      |
seq2  C  1138

seq1: chr15_75286353_75287435
seq2: B6Ng01-116E05.g_69_1138

seq1  GAATTCTTAAGGGTAGAGATCACCAAGGTCCTGCTCTGAATTTAAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGGTAGAGATCACCAAGGTCCTGCTCTGAATTTAAGAGGC  50

seq1  TGGAGCTGGACAAGCTAGTGAGATGGAACCTAGAGGAGGTGTGGGCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGGACAAGCTAGTGAGATGGAACCTAGAGGAGGTGTGGGCAGCA  100

seq1  GGAGTCAGAGAATGAGGAGGAGCCAAACAGGGTTAAAGAAGAATTAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGAGAATGAGGAGGAGCCAAACAGGGTTAAAGAAGAATTAAGTT  150

seq1  CATATTTTAAATTTTGTGATTTTGATAATTGCACCATAGTTATATGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTAAATTTTGTGATTTTGATAATTGCACCATAGTTATATGAAAT  200

seq1  GTCAGTGTTTGTAAAATGAACAGAAGGAGTTCCGAATAATTACTCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTTTGTAAAATGAACAGAAGGAGTTCCGAATAATTACTCTTCTT  250

seq1  TGGGTTTATTTTCCAACACTTTAGTTTTGGTTTTAGAGTCAGGGTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTATTTTCCAACACTTTAGTTTTGGTTTTAGAGTCAGGGTGTCAT  300

seq1  ATAGCCAAGGCCGGTCTTGAACCTCTGATCCTCTGCCTCCACCCGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAAGGCCGGTCTTGAACCTCTGATCCTCTGCCTCCACCCGAATGC  350

seq1  TGGGGTTATGAGCATGGGTTTCTGCATTCAGCTTTTTAAGCAACTCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTATGAGCATGGGTTTCTGCATTCAGCTTTTTAAGCAACTCACTA  400

seq1  TTTAAATACATCTAAGATTATTTCAAAATAAAAGAATGAACCCCTCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATACATCTAAGATTATTTCAAAATAAAAGAATGAACCCCTCAACT  450

seq1  GAATATTATTATTCTTCCTGATAAGTATGGATCCCAGGATTCCACATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATTATTCTTCCTGATAAGTATGGATCCCAGGATTCCACATAGA  500

seq1  AGCCAGATTTTTATCACTCATCCCTTCAAACTACCTTACAGATGTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATTTTTATCACTCATCCCTTCAAACTACCTTACAGATGTTCTCC  550

seq1  TGGGAAATGTGTTGAATTTGAGAAATTGCAGCTGCCTTTTTCAGTATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATGTGTTGAATTTGAGAAATTGCAGCTGCCTTTTTCAGTATTAA  600

seq1  TTTCCAACTTAAAGCTCAGAGGCGATAAGATCTGGACACTTTGAATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACTTAAAGCTCAGAGGCGATAAGATCTGGACACTTTGAATGGAA  650

seq1  GCAGTGAACTGGAAGGTCACCACCGAGTATCCTCTTCACAGACCTGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAACTGGAAGGTCACCACCGAGTATCCTCTTCACAGACCTGACTG  700

seq1  AGTGCCAGGGGCATTCAGTCACCTGCACAGTGAGGGCCTGAAGGGCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGGGGCATTCAGTCACCTGCACAGTGAGGGCCTGAAGGGCCCAC  750

seq1  CTGATCAGTTTTGCTTTTTGTTTTTGTTTGTGTGTGTGTTGTGAATATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAGTTTTGCTTTTTGTTTTTGTTTGTGTGTGTGTTGTGAATATGA  800

seq1  A-TTTGATAAAAAGCAAACTGCCCTCAGGGTCCTCAATCCTTGGCCCCAC  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATAAAAAGCAAACTGCCCTCAGGGTCCTCAATCCTTGGCCCCAC  850

seq1  CCCCTCAGGCCTGGGTAGGAGGCACTGC-TGACCTCATGCAGACACACCC  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCCTCAGGCCTGGGTAGGAGGCACTGCTTGACCTCATGCAGACACACCC  900

seq1  TTACTTAGGTGGACTTAGGAACCCAAATTCAGGTTAGAGCCCCAGTGGAG  948
      |||||||||||||| |||||||||||||||| |||||||||||| |||||
seq2  TTACTTAGGTGGAC-TAGGAACCCAAATTCA-GTTAGAGCCCCATTGGAG  948

seq1  TGGAGGAGGGTTCTGGGGCTGGTTCTAGGTGCTGTGTGACTCTGCTGTTC  998
      ||||||| |||||| |||||||||||||||||||| ||||||||||||| 
seq2  TGGAGGA-GGTTCT-GGGCTGGTTCTAGGTGCTGT-TGACTCTGCTGTT-  994

seq1  CTCCAGCCAGGCCCCAGGGGGTGCAGCTTAAGAACTCAGGAAGCTTCCTG  1048
      |||    |||||||||||||||| ||||| |||||||| |||||||||||
seq2  CTC--ATCAGGCCCCAGGGGGTG-AGCTT-AGAACTCA-GAAGCTTCCTG  1039

seq1  GAACCTTCTTTCCTCTTCCAGGCCCCAGGCAAGTT  1083
      ||||| ||||||||||| ||||  ||| |||||||
seq2  GAACC-TCTTTCCTCTT-CAGG--CCAAGCAAGTT  1070