BAC Information

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BAC

Clone NameB6Ng01-116O06
Chromosome15 (Build37)
Map Location 40,987,106 - 41,145,304
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670013, LOC664872, Zfpm2, Ppia-ps25
Downstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116O06.bB6Ng01-116O06.g
ACCDH921774DH921775
length1,1191,105
definitionDH921774|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O06, 5' end.DH921775|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,144,162 - 41,145,304)(40,987,106 - 40,988,212)
sequence
gaattctaaggtatgctttacaatggtaaagtatctcccctttgatattt
ttaaaacactcaaatatacaaggtagcatgatataactgatagtctttga
attcttaaacgtacaggattctacggtatgtgagaaagtcaaagagaccc
acgtagagcttggcaaagaagctaaaacattcaattaaaatgatatattt
atagatatttttactttataaatttccctttacatcataatgtttcctta
gcaattgtaagagtttcgtaattggcaaagggcctagtttagtgaacttt
cccttcagctgtgttctctagttctctattgaggttctcgtaagtggata
cttttaaaaagcatatctttttctttctctcacacagggtcatgatgcta
atggccacaacagtgaattcatttattcacagcagatatttaatgctggc
tgttgttggatctcttagtgaatttttctaatagcttatagttatagagg
gtacaggctttctctcaaaacaaaccagtgcatgttccaagatggaggta
actaagcatgacctttccttcaaatgtataaggcaaacctaaataaaaca
acgaccagtttgtgtcaaagctaataagaaatgagaggcagttaactatt
tgtctcttttctagacttcatgagcctgctcattgatatctaatgaatat
tctgtttggagactttcagtggtgtgtggcacttggtcagtttgatgtga
ctccagtccctcattcaaaaaagaataatcaattacaatggggaaatgca
tgcaaatcttcacctttcactcctcttttccttcccttctctcttcctca
cctcaaagaaaaacggagaagttacctgcttgccactggataaattttaa
tatgtttgacttaaagttctaattatttgatgtagcatttctgtggtaag
tcagcttattaaacctcttaaagaatgaaattatttttataccagtcaaa
catttaaaaataatcatatgtagtatgaagttgcaaagtgttaataccca
tatttacatttattctgtttatgtgatgtatagcatgaaattattctctt
ctttcctctttctctctct
gaattccgtgatgtgaggcaggggtgaggcaccggagaagcaaagggcac
attggaatgcattcctggcaatgtgagtgcagcaaggcgccactgctggc
ctctaatgatttctgtactcgctttctgcagcctgttagcctcttatctt
ctcacatcctctatgcctcaagaacgactcttctcataaaaccaggtgca
ttcacacagagaaaagcaggtctggagtaatctctaccaatctaaaagta
taaatttgggacagaggattcaaatcctgcattcgaaaattcatgtgatt
ggagtgtattggttccttttctcattgttgtgacgaaataaccaacaaaa
gccacttcaggaaggaagggttaactgtgctcacattccagtggtacaag
tccatcaaggtaggaagtcatggcggcagtaatttcaggtggctggttac
aatgtatccagggaccagctgcaaagatgaatgtctgtcccggcttagct
cagtttctcctttttgattagcctggggacccagcacaagagaaggcgtc
cctcacagttcctcacagttccgatacttttgtcctcttacctcaattaa
catagtctgaaagtcatcacatagacatgtccagtggtttttcttatgtg
cttctagatgttatcaacaggaactgacaatatatttgcacttaagcgaa
caggatgccagatgaacaaactcaaagaatatacttgatgtctgttaacc
aggcaggcaggcagacatgcatatacaagcgcgcacatgtagctcaggta
tagcttaatcatcatggaattgtaaagtacacacacacacacacacacac
acacacacacacacacacagtatatctttgggtggttatcagaaagtgta
agaagaatggatggatatcttttcttccttgtgcaaatccttagatctcc
ttgaagagcacagtttcaatgatgttgtccaatgactgagttccgtgact
gtcatgagaaagttacagaggagtccaccttattttattacgaaaatagg
acagactactgactgtgtacgatgccaccaccccctacctggacacaaag
tgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_41144162_41145304
seq2: B6Ng01-116O06.b_48_1166 (reverse)

seq1  AGAGAGAGAAAGAGAGAGAGAGAGAGGGAGAGAGAGAGAATAAATATTAC  50
                  ||||||||| ||| ||| ||| |||||||||    |  
seq2  ------------AGAGAGAGAAAGA-GGAAAGA-AGAGAATAA----TTT  32

seq1  CATGCTTATTAACATCACATAAAACAGAATAAATGTAAATATGGGTATTA  100
      ||||| |||  ||||||||| |||||||||||||||||||||||||||||
seq2  CATGC-TAT--ACATCACAT-AAACAGAATAAATGTAAATATGGGTATTA  78

seq1  ACACCTTTGCAACTTCATACTACATATGATTATTTTTAAATGTTTGACTG  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACA-CTTTGCAACTTCATACTACATATGATTATTTTTAAATGTTTGACTG  127

seq1  GTATAAAATAATTTTCATTCTTTAAGAGGTTTAATAAGCTGACTTACCAC  200
      ||||||||  | ||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAATAATTTCATTCTTTAAGAGGTTTAATAAGCTGACTTACCAC  177

seq1  AGAAATGCTACATCAAAATAATTAGAACTTTAAGTCAAACATATTAAAAT  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAAATGCTACATC-AAATAATTAGAACTTTAAGTCAAACATATTAAAAT  226

seq1  TTATCCAGTGGCAAGCAGGTAACTTCTCCGTTTTTCTTTGAGGTGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGTGGCAAGCAGGTAACTTCTCCGTTTTTCTTTGAGGTGAGGAA  276

seq1  GAGAGAAGGGAAGGAAAAGAGGAGTGAAAGGTGAAGATTTGCATGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGGGAAGGAAAAGAGGAGTGAAAGGTGAAGATTTGCATGCATTT  326

seq1  CCCCATTGTAATTGATTATTCTTTTTTGAATGAGGGACTGGAGTCACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGTAATTGATTATTCTTTTTTGAATGAGGGACTGGAGTCACATC  376

seq1  AAACTGACCAAGTGCCACACACCACTGAAAGTCTCCAAACAGAATATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACCAAGTGCCACACACCACTGAAAGTCTCCAAACAGAATATTCA  426

seq1  TTAGATATCAATGAGCAGGCTCATGAAGTCTAGAAAAGAGACAAATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATCAATGAGCAGGCTCATGAAGTCTAGAAAAGAGACAAATAGTT  476

seq1  AACTGCCTCTCATTTCTTATTAGCTTTGACACAAACTGGTCGTTGTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTCTCATTTCTTATTAGCTTTGACACAAACTGGTCGTTGTTTTA  526

seq1  TTTAGGTTTGCCTTATACATTTGAAGGAAAGGTCATGCTTAGTTACCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTGCCTTATACATTTGAAGGAAAGGTCATGCTTAGTTACCTCC  576

seq1  ATCTTGGAACATGCACTGGTTTGTTTTGAGAGAAAGCCTGTACCCTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAACATGCACTGGTTTGTTTTGAGAGAAAGCCTGTACCCTCTAT  626

seq1  AACTATAAGCTATTAGAAAAATTCACTAAGAGATCCAACAACAGCCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAGCTATTAGAAAAATTCACTAAGAGATCCAACAACAGCCAGCA  676

seq1  TTAAATATCTGCTGTGAATAAATGAATTCACTGTTGTGGCCATTAGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATCTGCTGTGAATAAATGAATTCACTGTTGTGGCCATTAGCATC  726

seq1  ATGACCCTGTGTGAGAGAAAGAAAAAGATATGCTTTTTAAAAGTATCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTGTGTGAGAGAAAGAAAAAGATATGCTTTTTAAAAGTATCCAC  776

seq1  TTACGAGAACCTCAATAGAGAACTAGAGAACACAGCTGAAGGGAAAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGAACCTCAATAGAGAACTAGAGAACACAGCTGAAGGGAAAGTTC  826

seq1  ACTAAACTAGGCCCTTTGCCAATTACGAAACTCTTACAATTGCTAAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTAGGCCCTTTGCCAATTACGAAACTCTTACAATTGCTAAGGAA  876

seq1  ACATTATGATGTAAAGGGAAATTTATAAAGTAAAAATATCTATAAATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGATGTAAAGGGAAATTTATAAAGTAAAAATATCTATAAATATA  926

seq1  TCATTTTAATTGAATGTTTTAGCTTCTTTGCCAAGCTCTACGTGGGTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAATTGAATGTTTTAGCTTCTTTGCCAAGCTCTACGTGGGTCTC  976

seq1  TTTGACTTTCTCACATACCGTAGAATCCTGTACGTTTAAGAATTCAAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTCTCACATACCGTAGAATCCTGTACGTTTAAGAATTCAAAGA  1026

seq1  CTATCAGTTATATCATGCTACCTTGTATATTTGAGTGTTTTAAAAATATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTTATATCATGCTACCTTGTATATTTGAGTGTTTTAAAAATATC  1076

seq1  AAAGGGGAGATACTTTACCATTGTAAAGCATACCTTAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAGATACTTTACCATTGTAAAGCATACCTTAGAATTC  1119

seq1: chr15_40987106_40988212
seq2: B6Ng01-116O06.g_71_1174

seq1  GAATTCCGTGATGTGAGGCAGGGGTGAGGCACCGGAGAAGCAAAGGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGATGTGAGGCAGGGGTGAGGCACCGGAGAAGCAAAGGGCAC  50

seq1  ATTGGAATGCATTCCTGGCAATGTGAGTGCAGCAAGGCGCCACTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATGCATTCCTGGCAATGTGAGTGCAGCAAGGCGCCACTGCTGGC  100

seq1  CTCTAATGATTTCTGTACTCGCTTTCTGCAGCCTGTTAGCCTCTTATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGATTTCTGTACTCGCTTTCTGCAGCCTGTTAGCCTCTTATCTT  150

seq1  CTCACATCCTCTATGCCTCAAGAACGACTCTTCTCATAAAACCAGGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCCTCTATGCCTCAAGAACGACTCTTCTCATAAAACCAGGTGCA  200

seq1  TTCACACAGAGAAAAGCAGGTCTGGAGTAATCTCTACCAATCTAAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGAGAAAAGCAGGTCTGGAGTAATCTCTACCAATCTAAAAGTA  250

seq1  TAAATTTGGGACAGAGGATTCAAATCCTGCATTCGAAAATTCATGTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGGGACAGAGGATTCAAATCCTGCATTCGAAAATTCATGTGATT  300

seq1  GGAGTGTATTGGTTCCTTTTCTCATTGTTGTGACGAAATAACCAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTATTGGTTCCTTTTCTCATTGTTGTGACGAAATAACCAACAAAA  350

seq1  GCCACTTCAGGAAGGAAGGGTTAACTGTGCTCACATTCCAGTGGTACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCAGGAAGGAAGGGTTAACTGTGCTCACATTCCAGTGGTACAAG  400

seq1  TCCATCAAGGTAGGAAGTCATGGCGGCAGTAATTTCAGGTGGCTGGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAGGTAGGAAGTCATGGCGGCAGTAATTTCAGGTGGCTGGTTAC  450

seq1  AATGTATCCAGGGACCAGCTGCAAAGATGAATGTCTGTCCCGGCTTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCCAGGGACCAGCTGCAAAGATGAATGTCTGTCCCGGCTTAGCT  500

seq1  CAGTTTCTCCTTTTTGATTAGCCTGGGGACCCAGCACAAGAGAAGGCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTCCTTTTTGATTAGCCTGGGGACCCAGCACAAGAGAAGGCGTC  550

seq1  CCTCACAGTTCCTCACAGTTCCGATACTTTTGTCCTCTTACCTCAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGTTCCTCACAGTTCCGATACTTTTGTCCTCTTACCTCAATTAA  600

seq1  CATAGTCTGAAAGTCATCACATAGACATGTCCAGTGGTTTTTCTTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCTGAAAGTCATCACATAGACATGTCCAGTGGTTTTTCTTATGTG  650

seq1  CTTCTAGATGTTATCAACAGGAACTGACAATATATTTGCACTTAAGCGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGATGTTATCAACAGGAACTGACAATATATTTGCACTTAAGCGAA  700

seq1  CAGGATGCCAGATGAACAAACTCAAAGAATATACTTGATGTCTGTTAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCCAGATGAACAAACTCAAAGAATATACTTGATGTCTGTTAACC  750

seq1  AGGCAGGCAGGCAGACATGCATATACAAGCGCGCACATGTAGCTCAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGCAGGCAGGCAGACATGCATATACAAGCGCGCACATGTAGCTC-AGGT  799

seq1  ATAGCTTAATCATCATGGAATTGTAAAGTACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTAATCATCATGGAATTGTAAAGTACACACACACACACACACACA  849

seq1  CACACACACACACACACACAGTATATCTTTGGGTGGTTATCAGAAAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGTATATCTTTGGGTGGTTATCAGAAAGTGT  899

seq1  AAGAAGAATGGATGGATATC-TTTCTTCCTTTGTGCAAATCCTTCAGATT  949
      |||||||||||||||||||| |||||||| |||||||||||||| ||| |
seq2  AAGAAGAATGGATGGATATCTTTTCTTCC-TTGTGCAAATCCTT-AGA-T  946

seq1  CTCCTTGAAGAGCACAGTTTCAATGATG-TGTCCAATGACTGAGTTCAGT  998
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  CTCCTTGAAGAGCACAGTTTCAATGATGTTGTCCAATGACTGAGTTCCGT  996

seq1  GACTGTCATGAGAAAGTAACAGAGGGAGTCCACC-TATTTTATTACAGAA  1047
      ||||||||||||||||| ||||| |||||||||| ||||||||||| |||
seq2  GACTGTCATGAGAAAGTTACAGA-GGAGTCCACCTTATTTTATTAC-GAA  1044

seq1  AATAGGACAGACTACTGACTGTGTACAGATG-CAGCAACCCCTACCTGGA  1096
      |||||||||||||||||||||||||| |||| || || ||||||||||||
seq2  AATAGGACAGACTACTGACTGTGTAC-GATGCCACCACCCCCTACCTGGA  1093

seq1  -ACAACAGTGCA  1107
       |||| ||||||
seq2  CACAA-AGTGCA  1104