BAC Information

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BAC

Clone NameB6Ng01-117A12
Chromosome15 (Build37)
Map Location 83,234,238 - 83,373,415
singlet/doubletdoublet
Overlap genePacsin2, LOC414359, Ttll1, Bik
Upstream geneCyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
Downstream geneMcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117A12.bB6Ng01-117A12.g
ACCDH921875DH921876
length1,1181,181
definitionDH921875|Mus musculus domesticus DNA, BAC clone: B6Ng01-117A12, 5' end.DH921876|Mus musculus domesticus DNA, BAC clone: B6Ng01-117A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,372,283 - 83,373,415)(83,234,238 - 83,235,433)
sequence
gaattcaggacccagcaagaggaaggcagtgggatactgggggaaggagg
gagcggggcgggggggctagcagcaaacctcctcggtgtccctcttatcc
atgggtgcacttatgagtaagagccatttcaaatgtgcccctgtaggata
aaccacaggctactgagacctatcccagcctataccccatgtctgcctct
tgcggaagtcagacacaaaagtactaggggatgtcttgtgaacctgcccg
gaagtcagggacagcttacttctgcttactccaggaactttcctttagag
aatcttggggaggggcctacctggtgaacattgaagaacaagtgtggggt
gtgtgtgcttggagccccttcagttggcttcctatagggtctcagtctat
cctgctcccggagacctgtccctggttcccagtctcagaacactggtgcc
tgcaccttctccagatggagagcagtaaaccaaattcaattccctccacc
atctacactggtagcacgtgccttcaatttaaagaaaatctcaggggctg
gagaggtagctcagcagctaaggtacttgttgctcaggcagacgacatga
ttgtttacagccacctgtaatttcagttccaagggctacagcgtcctcct
ctgagtactgcaggcaccagggatgtacgaagggcacagacatacgtgca
ggcaagcactcatgcacataaaataaatcttttaaaaacaataaaaagtc
tccattgaaacaggagacacacttgtgtggtgaatacacacacaaacaca
cacacacacacacacacacacacacacacacacacacacacactgaacca
gcctggctaaccccttcctggggttgcccacacatttcacaccagcgaca
cagtagctcactggaagtccttacagagggcatctcagagccacctgttc
cacacacccagtgtcctaggttctcctgatttgatggtcacagggatcaa
ggaacctggatggttgcctgcaccgagttgagcgaattagtccggccttt
cccttgaagaacctcccaggaaaaactgtctcggcttcttcccctcagga
tggagccagaagtgaggc
gaattctttccatgaagaggtcacattgttccaaagttgtttgctggagt
ttctctccctcattctttgtcttagctagtcttcactgctgtaccagagt
cccccaaaccccatccattcttccagagcagctagccatagtcctgtgta
tctccaaatacaaccttccagcctgtttctttagtttcatcaaacaacag
agtctgcttcctgtctatctggtggtggaagtggatcaagacaaagaatc
gcatctcaggaaatctgtaactggcaatgtgacagaatcagcacttagac
ttcaggatcaatcacacaggggcatcctgtagctctgaaagtctgagtcc
tttcatagaccagatgtgatcagcactgctgattcaatatggcaggatga
ctcagcgcaactcctaggcccaagtgaatcaccagccacaactaggcaaa
gcaggtcaggaggaagaggagaaggaacgagaacctgaagcatcaggagt
catcttatgcaggaagggcctaccacaccaaccactgttggtgactctca
ttcatttgcaactactgtaggcaggtctctccatccacccacccatccat
ccatccatccatccatccatccatccatccatccatccaataaatataat
tctaagtctcaggaacaggccagtgtcagggatacaaacagcccatgggc
tataccttaattttcttaaatatagctgcatgtagtaccgtacgcctaac
cccaagcttctcaggaaacttaaagcaaagattccttggatccagaggtt
caaggttaccctaggcaacatagtaagaccctggtcaaaatgtaagtaca
taaatagtaatcttagttctagcctgggctagaatgggaactaaataaag
gactactaatcaaatgcaaacagaagaaatgctttgccctttggtgctgt
aagctaaataaacaggtaattagtgacatcacaaccaaatctaggatgtt
gagctggagagatgtctcagctggagagagttaagagacttgctgttcaa
gaagaactgggtttggactccagcacccacattgttgctgtctgtaactt
caggtcaaagatccaatttcttcttcttgcctcaagagtacaggcatgca
tgtgggccaaatatacatgtaggccaacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83372283_83373415
seq2: B6Ng01-117A12.b_49_1166 (reverse)

seq1  GCCTCACTTTCTGCTCCATTCCTGAGTGGAATGAAGCCGGGGACAGTGTT  50
      |||||||||   |||||| ||||||| |||| |||||| | |||||| ||
seq2  GCCTCACTTCTGGCTCCA-TCCTGAGGGGAA-GAAGCC-GAGACAGT-TT  46

seq1  TTCCTGGGGGGTCTCTCAGGGAATAGGCGGGACTAAATCCGCTCAACTCG  100
      |||||||| |||   ||| || | |||| ||||| ||| |||||||||||
seq2  TTCCTGGGAGGTTCTTCAAGGGAAAGGCCGGACT-AATTCGCTCAACTCG  95

seq1  GTTGCCAGGCGACCTTCCAGGTTCCTTGAACCCTTGTGACCATCAGAATC  150
      ||   ||||| ||| |||||||||||||| ||| ||||||||||| ||||
seq2  GT--GCAGGCAACCATCCAGGTTCCTTGATCCC-TGTGACCATCA-AATC  141

seq1  AGGAAGAAACCTAGGACACTGGGTGTGTGGAACAGGTGGCTCTGGAGATG  200
      ||||   |||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGA--GAACCTAGGACACTGGGTGTGTGGAACAGGTGGCTCT-GAGATG  188

seq1  CCCTCTGTAGGGACTTTCCAGTGAGCTGCTGTGTCGCTGGTGTGGAATGT  250
      ||||||||| |||| |||||||||||| |||||||||||||||| |||||
seq2  CCCTCTGTAAGGAC-TTCCAGTGAGCTACTGTGTCGCTGGTGTGAAATGT  237

seq1  GTGGGCAAACCCCAGGAAGGGCTTAGCCAGGCTGGTTTCAGTGTGTGTGT  300
      |||||| |||||||||||||| ||||||||||||| ||||||||||||||
seq2  GTGGGC-AACCCCAGGAAGGGGTTAGCCAGGCTGG-TTCAGTGTGTGTGT  285

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTAT  335

seq1  TCACCACACAAGTGTGTCTCCTGTTTCAATGGAGACTTTTTATTGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACACAAGTGTGTCTCCTGTTTCAATGGAGACTTTTTATTGTTTTT  385

seq1  AAAAGATTTATTTTATGTGCATGAGTGCTTGCCTGCACGTATGTCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTATTTTATGTGCATGAGTGCTTGCCTGCACGTATGTCTGTGC  435

seq1  CCTTCGTACATCCCTGGTGCCTGCAGTACTCAGAGGAGGACGCTGTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGTACATCCCTGGTGCCTGCAGTACTCAGAGGAGGACGCTGTAGCC  485

seq1  CTTGGAACTGAAATTACAGGTGGCTGTAAACAATCATGTCGTCTGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACTGAAATTACAGGTGGCTGTAAACAATCATGTCGTCTGCCTGA  535

seq1  GCAACAAGTACCTTAGCTGCTGAGCTACCTCTCCAGCCCCTGAGATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAGTACCTTAGCTGCTGAGCTACCTCTCCAGCCCCTGAGATTTTC  585

seq1  TTTAAATTGAAGGCACGTGCTACCAGTGTAGATGGTGGAGGGAATTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGAAGGCACGTGCTACCAGTGTAGATGGTGGAGGGAATTGAAT  635

seq1  TTGGTTTACTGCTCTCCATCTGGAGAAGGTGCAGGCACCAGTGTTCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTACTGCTCTCCATCTGGAGAAGGTGCAGGCACCAGTGTTCTGAG  685

seq1  ACTGGGAACCAGGGACAGGTCTCCGGGAGCAGGATAGACTGAGACCCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAACCAGGGACAGGTCTCCGGGAGCAGGATAGACTGAGACCCTAT  735

seq1  AGGAAGCCAACTGAAGGGGCTCCAAGCACACACACCCCACACTTGTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCAACTGAAGGGGCTCCAAGCACACACACCCCACACTTGTTCTT  785

seq1  CAATGTTCACCAGGTAGGCCCCTCCCCAAGATTCTCTAAAGGAAAGTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCACCAGGTAGGCCCCTCCCCAAGATTCTCTAAAGGAAAGTTCC  835

seq1  TGGAGTAAGCAGAAGTAAGCTGTCCCTGACTTCCGGGCAGGTTCACAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAGCAGAAGTAAGCTGTCCCTGACTTCCGGGCAGGTTCACAAGA  885

seq1  CATCCCCTAGTACTTTTGTGTCTGACTTCCGCAAGAGGCAGACATGGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTAGTACTTTTGTGTCTGACTTCCGCAAGAGGCAGACATGGGGT  935

seq1  ATAGGCTGGGATAGGTCTCAGTAGCCTGTGGTTTATCCTACAGGGGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTGGGATAGGTCTCAGTAGCCTGTGGTTTATCCTACAGGGGCACA  985

seq1  TTTGAAATGGCTCTTACTCATAAGTGCACCCATGGATAAGAGGGACACCG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATGGCTCTTACTCATAAGTGCACCCATGGATAAGAGGGACACCG  1035

seq1  AGGAGGTTTGCTGCTAGCCCCCCCGCCCCGCTCCCTCCTTCCCCCAGTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTTGCTGCTAGCCCCCCCGCCCCGCTCCCTCCTTCCCCCAGTAT  1085

seq1  CCCACTGCCTTCCTCTTGCTGGGTCCTGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  CCCACTGCCTTCCTCTTGCTGGGTCCTGAATTC  1118

seq1: chr15_83234238_83235433
seq2: B6Ng01-117A12.g_67_1247

seq1  GAATTCTTTCCATGAAGAGGTCACATTGTTCCAAAGTTGTTTGCTGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCATGAAGAGGTCACATTGTTCCAAAGTTGTTTGCTGGAGT  50

seq1  TTCTCTCCCTCATTCTTTGTCTTAGCTAGTCTTCACTGCTGTACCAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCTCATTCTTTGTCTTAGCTAGTCTTCACTGCTGTACCAGAGT  100

seq1  CCCCCAAACCCCATCCATTCTTCCAGAGCAGCTAGCCATAGTCCTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAACCCCATCCATTCTTCCAGAGCAGCTAGCCATAGTCCTGTGTA  150

seq1  TCTCCAAATACAACCTTCCAGCCTGTTTCTTTAGTTTCATCAAACAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAATACAACCTTCCAGCCTGTTTCTTTAGTTTCATCAAACAACAG  200

seq1  AGTCTGCTTCCTGTCTATCTGGTGGTGGAAGTGGATCAAGACAAAGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTTCCTGTCTATCTGGTGGTGGAAGTGGATCAAGACAAAGAATC  250

seq1  GCATCTCAGGAAATCTGTAACTGGCAATGTGACAGAATCAGCACTTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCAGGAAATCTGTAACTGGCAATGTGACAGAATCAGCACTTAGAC  300

seq1  TTCAGGATCAATCACACAGGGGCATCCTGTAGCTCTGAAAGTCTGAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATCAATCACACAGGGGCATCCTGTAGCTCTGAAAGTCTGAGTCC  350

seq1  TTTCATAGACCAGATGTGATCAGCACTGCTGATTCAATATGGCAGGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGACCAGATGTGATCAGCACTGCTGATTCAATATGGCAGGATGA  400

seq1  CTCAGCGCAACTCCTAGGCCCAAGTGAATCACCAGCCACAACTAGGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGCAACTCCTAGGCCCAAGTGAATCACCAGCCACAACTAGGCAAA  450

seq1  GCAGGTCAGGAGGAAGAGGAGAAGGAACGAGAACCTGAAGCATCAGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCAGGAGGAAGAGGAGAAGGAACGAGAACCTGAAGCATCAGGAGT  500

seq1  CATCTTATGCAGGAAGGGCCTACCACACCAACCACTGTTGGTGACTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATGCAGGAAGGGCCTACCACACCAACCACTGTTGGTGACTCTCA  550

seq1  TTCATTTGCAACTACTGTAGGCAGGTCTCTCCATCCACCCACCCATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGCAACTACTGTAGGCAGGTCTCTCCATCCACCCACCCATCCAT  600

seq1  CCATCCATCCATCCATCCATCCATCCATCCATCCATCCAATAAATATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCCATCCATCCATCCATCCATCCATCCATCCAATAAATATAAT  650

seq1  TCTAAGTCTCAGGAACAGGCCAGTGTCAGGGATACAAACAGCCCATGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCTCAGGAACAGGCCAGTGTCAGGGATACAAACAGCCCATGGGC  700

seq1  TATACCTTAATTTTCTTAAATATAGCTGCATGTAGTACCGTACGCCTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTAATTTTCTTAAATATAGCTGCATGTAGTACCGTACGCCTAAC  750

seq1  CCCAAGCTTCTCAGGAAACTTAAAGCAAAGATTCCTTGGATCCAGAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTTCTCAGGAAACTTAAAGCAAAGATTCCTTGGATCCAGAGGTT  800

seq1  CAAGGTTACCCTAGGCAACATAGTAAGACCCTGGTCAAAATGTAAGTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTACCCTAGGCAACATAGTAAGACCCTGGTCAAAATGTAAGTACA  850

seq1  TAAATAGTAATCTTAGTTCTAGCCTGGGCTAGAATGGGAACTAAATAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTAATCTTAGTTCTAGCCTGGGCTAGAATGGGAACTAAATAAAG  900

seq1  GACTACTAATCAAATGCAAACAGAAGAAATGCTTTGCCCTTTGGTGCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTAATCAAATGCAAACAGAAGAAATGCTTTGCCCTTTGGTGCTGT  950

seq1  AAGCTAAATAAAACAGGTAATTAGTGACAATCACAACCAAAATCTAAGGA  1000
      ||||||||| |||||||||||||||||| ||||||||| |||||| ||||
seq2  AAGCTAAAT-AAACAGGTAATTAGTGAC-ATCACAACC-AAATCT-AGGA  996

seq1  TG-TGAGCTGGAGAGATGTCTCAGCTGGAGAGAAGGTTAAGAGACCTGGC  1049
      || ||||||||||||||||||||||||||||||  ||||||||| || ||
seq2  TGTTGAGCTGGAGAGATGTCTCAGCTGGAGAGA--GTTAAGAGA-CTTGC  1043

seq1  TGTTCAAGAGGACCTGGGTTT-GACTCCCAGCACCCACATGGTGGCTGTC  1098
      ||||||||| || |||||||| |||| ||||||||||||| || ||||||
seq2  TGTTCAAGAAGAACTGGGTTTGGACT-CCAGCACCCACATTGTTGCTGTC  1092

seq1  TGTAACTCCAGGTCCAGAGGATCCAATATCCTCTTCTGGCCTCCAAAAGT  1148
      ||||||| ||||||   | |||||||| || |||||| |||| ||| |||
seq2  TGTAACTTCAGGTC--AAAGATCCAATTTCTTCTTCTTGCCT-CAAGAGT  1139

seq1  ACCAGGCATGCATGTGGTGCACAGAAATATACATGTAGGCAAAACAAT  1196
      | |||||||||||||||  |    ||||||||||||||||  ||||||
seq2  A-CAGGCATGCATGTGGGCC----AAATATACATGTAGGC-CAACAAT  1181