BAC Information

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BAC

Clone NameB6Ng01-117L03
Chromosome15 (Build37)
Map Location 39,044,336 - 39,045,515
singlet/doubletsinglet
Overlap geneRims2
Upstream geneOdf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117L03.g
ACCDH922370
length1,166
definitionDH922370|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttggtatcctgttacctactaacaaagtaatgaatgtagttgg
ttacagtattagatatgaaggatctataattaccgcccttcctcacagaa
cagggtttctctgtgtagccttggctgtcctggaactcactctgcagatc
aggctggccttaaactcacagagacccatctgcttctgtcttctgagtgt
tgggattaaaggcttgggctaccactgcctggttaattactctattctta
attctgttatgaattaagtaaagagccttactctttaaccgatgaactgc
tctgtgtgcagctctattgctatgatgagaaccttctgataacgatatgg
aatctctctttcgagttacatagcactttgtctatattttatgtttctga
tatctgagagtagttactattctttatttttcttagaacactcagctgat
tctaatttgtgtaccaaattttaatctttttaatgaaatgattaattgat
ttttatggtcagggaagtaccagacactcagcttaaacattttaaactaa
aacttggtggtgctggaagaatcctcttgtcttcctttccttttgccagc
cacaaatataaccagttactaaatactttttagtcatatttctcaaatat
ctttcaaatctgtcatttcatcatctttattgtcattgtcttgtgccttt
aatattcatgtctcagtagttttatttttcatgtttacctactctgacca
aacctccgtaatggttcagctctttaagacacagatgatatttttaaatg
tttaaaattcttcagtatctctacttcacttaacaattactttaagtata
ttggtgttctgcctgtatgtctgtctgtgtatgatatgagtgtttgttgt
ctgaggaggcagaagagtgaatctgatcccttgtgactggagtcgcagac
agttgtgagccactatgagggtgctccttttaacaactgagccatttctg
cagctctgctattccttttttatttgtatttgtcttccataagtttgttg
agttgactatattggggggcttgtaggagctgattatggacttacattca
ttcagtatttattataccctaggttcaggtctcgaatggacttagagcct
cacccaggttgtatct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39044336_39045515
seq2: B6Ng01-117L03.g_68_1233

seq1  GAATTCCTTGGTATCCTGTTACCTACTAACAAAGTAATGAATGTAGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGTATCCTGTTACCTACTAACAAAGTAATGAATGTAGTTGG  50

seq1  TTACAGTATTAGATATGAAGGATCTATAATTACCGCCCTTCCTCACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTATTAGATATGAAGGATCTATAATTACCGCCCTTCCTCACAGAA  100

seq1  CAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGCAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGCAGATC  150

seq1  AGGCTGGCCTTAAACTCACAGAGACCCATCTGCTTCTGTCTTCTGAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTAAACTCACAGAGACCCATCTGCTTCTGTCTTCTGAGTGT  200

seq1  TGGGATTAAAGGCTTGGGCTACCACTGCCTGGTTAATTACTCTATTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCTTGGGCTACCACTGCCTGGTTAATTACTCTATTCTTA  250

seq1  ATTCTGTTATGAATTAAGTAAAGAGCCTTACTCTTTAACCGATGAACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTATGAATTAAGTAAAGAGCCTTACTCTTTAACCGATGAACTGC  300

seq1  TCTGTGTGCAGCTCTATTGCTATGATGAGAACCTTCTGATAACGATATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCAGCTCTATTGCTATGATGAGAACCTTCTGATAACGATATGG  350

seq1  AATCTCTCTTTCGAGTTACATAGCACTTTGTCTATATTTTATGTTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCTTTCGAGTTACATAGCACTTTGTCTATATTTTATGTTTCTGA  400

seq1  TATCTGAGAGTAGTTACTATTCTTTATTTTTCTTAGAACACTCAGCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGAGTAGTTACTATTCTTTATTTTTCTTAGAACACTCAGCTGAT  450

seq1  TCTAATTTGTGTACCAAATTTTAATCTTTTTAATGAAATGATTAATTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTGTGTACCAAATTTTAATCTTTTTAATGAAATGATTAATTGAT  500

seq1  TTTTATGGTCAGGGAAGTACCAGACACTCAGCTTAAACATTTTAAACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTCAGGGAAGTACCAGACACTCAGCTTAAACATTTTAAACTAA  550

seq1  AACTTGGTGGTGCTGGAAGAATCCTCTTGTCTTCCTTTCCTTTTGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTGGTGCTGGAAGAATCCTCTTGTCTTCCTTTCCTTTTGCCAGC  600

seq1  CACAAATATAACCAGTTACTAAATACTTTTTAGTCATATTTCTCAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATAACCAGTTACTAAATACTTTTTAGTCATATTTCTCAAATAT  650

seq1  CTTTCAAATCTGTCATTTCATCATCTTTATTGTCATTGTCTTGTGCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATCTGTCATTTCATCATCTTTATTGTCATTGTCTTGTGCCTTT  700

seq1  AATATTCATGTCTCAGTAGTTTTATTTTTCATGTTTACCTACTCTGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATGTCTCAGTAGTTTTATTTTTCATGTTTACCTACTCTGACCA  750

seq1  AACCTCCGTAATGGTTCAGCTCTTTAAGACACAGATGATATTTTTAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCGTAATGGTTCAGCTCTTTAAGACACAGATGATATTTTTAAATG  800

seq1  TTTAAAATTCTTCAGTATCTCTACTTCACTTAACAATTACTTTAAGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTCTTCAGTATCTCTACTTCACTTAACAATTACTTTAAGTATA  850

seq1  TTGGTGTTCTGCCTGTATGTCTGTCTGTGTATGATATGAGTGTTTGTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTCTGCCTGTATGTCTGTCTGTGTATGATATGAGTGTTTGTTGT  900

seq1  CTGAGGAGGCCAGAAGAGTGAATCTGATCCCTTGTGACTGGAGTCGCAGA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGG-CAGAAGAGTGAATCTGATCCCTTGTGACTGGAGTCGCAGA  949

seq1  CAGTTGTGAGCCACTATGAGGGTGCTCCTTTTAACAACTGAGCCATTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGAGCCACTATGAGGGTGCTCCTTTTAACAACTGAGCCATTTCT  999

seq1  GCAGCCTCTGCTATTCCTTTTTTATTTTGTATTTGTCTTCCATTAAGTTT  1050
      |||| ||||||||||||||||||| ||||||||||||||||| |||||||
seq2  GCAG-CTCTGCTATTCCTTTTTTA-TTTGTATTTGTCTTCCA-TAAGTTT  1046

seq1  TGTTTGAGTTTGACTATATTGGTGGGCTTGTAGGAGCTGAATTATGGACT  1100
         ||||| ||||||||||||| |||||||||||||||| ||||||||||
seq2  --GTTGAG-TTGACTATATTGGGGGGCTTGTAGGAGCTG-ATTATGGACT  1092

seq1  TACATTCATTCAGTATTTATTATACACTAGGTTTCAGGTCTCAGATGGAC  1150
      ||||||||||||||||||||||||| ||||| ||||||||||  ||||| 
seq2  TACATTCATTCAGTATTTATTATACCCTAGG-TTCAGGTCTCGAATGGA-  1140

seq1  CTTAGAAGCCTACAACACAGGTTTGTATCT  1180
      ||||| |||||   || |||| ||||||||
seq2  CTTAG-AGCCT--CACCCAGG-TTGTATCT  1166