BAC Information

Click to search

BAC

Clone NameB6Ng01-117M02
Chromosome15 (Build37)
Map Location 81,259,280 - 81,364,438
singlet/doubletdoublet
Overlap geneXpnpep3, Rbx1, EG383080
Upstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Dnajb7
Downstream geneEp300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117M02.bB6Ng01-117M02.g
ACCDH922413DH922414
length1,097282
definitionDH922413|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M02, 5' end.DH922414|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,259,280 - 81,260,385)(81,364,157 - 81,364,438)
sequence
gaattcacagagagtgctttcctctgcttcccgtgtgctgacataaaagg
cacgccaagcccagcttatatctactttttttctttccaagacagggttc
tatatagccccagctgttctgaaactaccccccccccccccggcctctgg
gattaaaggtgctatccaagtgcaactatgcctggctaatccattattct
aaatgttagtagtttgataggtaaaagtactagatactggaaagtattag
tgaatctaatataattatttacattttttttttaaaaaaaaccttcattg
gagttgtatctcatagcatatcatttgctggcacgtaccaggcctcaggt
tcccaccccagcactgacatacaagaccaacccaataggtgttaagcttt
cctacactgaatataagtaattggttaatttttctttctctttttttttg
gggggcggggattgagacagggtttctctgtgtagccctgggtgtcctgg
aacttactctgtagaccaggctagcctcaaactcagaaatccgcctgcct
ctgcctctgtgccaccactccctggcagattatttaattttaaaaaaatt
aaggcatacactattataattatttcccatgtattatacatttaataaca
tttttaaatcttttttttaaagatttatttattttatttatatgagaaca
ctgtagctgtcttcagtcacaacattagagggctcccattaaagatggtt
gtgagccaccatgtggttgctgggaattgaatttaggaccgctggaagag
cagtcagtactcttaactgccgagtcatctcttccagccctgacattatt
attttaaatatatttgacctgtagcatcataatgcatccccagtcaagtt
tcctcaattcttcttaatcatacactttttgatcatacaccctacagatt
tagtgaagaaagtcattcttggtcactgtagcaaaagatggcttataatt
gagctgctgggtggtggtacatcattttcattaggaggcctagagcagtg
cctctcaactgtgggtctgaccgctgctggtgccatcgcatatcctg
caagccatccaggactatattagttgtctcaaaaaaaaaaaaaaaagaga
aaaagaaaagaaagaaaaggacaacccaggcaaaggttgagggatgtagc
tgtatgaataggaagatgaatggagcagagagagcaggcagaaatttgtt
attattatttattaaaatttttggactgggcggtagtagcatactccttt
aatcccagcactcgggaggcagaggcaggcagatatctgagttaagaggt
ttgcctggtctacaaagtgagttccaggacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_81259280_81260385
seq2: B6Ng01-117M02.b_44_1140

seq1  GAATTCACAGAGAGTGCTTTCCTCTGCTTCCCGTGTGCTGACATAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGAGTGCTTTCCTCTGCTTCCCGTGTGCTGACATAAAAGG  50

seq1  CACGCCAAGCCCAGCTTATATCTACTTTTTTTCTTTCCAAGACAGGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCAAGCCCAGCTTATATCTACTTTTTTTCTTTCCAAGACAGGGTTC  100

seq1  TATATAGCCCCAGCTGTTCTGAAACTACCCCCCCCCCCCCCGGCCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCCCCAGCTGTTCTGAAACTACCCCCCCCCCCCCCGGCCTCTGG  150

seq1  GATTAAAGGTGCTATCCAAGTGCAACTATGCCTGGCTAATCCATTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGCTATCCAAGTGCAACTATGCCTGGCTAATCCATTATTCT  200

seq1  AAATGTTAGTAGTTTGATAGGTAAAAGTACTAGATACTGGAAAGTATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGTAGTTTGATAGGTAAAAGTACTAGATACTGGAAAGTATTAG  250

seq1  TGAATCTAATATAATTATTTACATTTTTTTTTTAAAAAAAACCTTCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTAATATAATTATTTACATTTTTTTTTTAAAAAAAACCTTCATTG  300

seq1  GAGTTGTATCTCATAGCATATCATTTGCTGGCACGTACCAGGCCTCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTATCTCATAGCATATCATTTGCTGGCACGTACCAGGCCTCAGGT  350

seq1  TCCCACCCCAGCACTGACATACAAGACCAACCCAATAGGTGTTAAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCCAGCACTGACATACAAGACCAACCCAATAGGTGTTAAGCTTT  400

seq1  CCTACACTGAATATAAGTAATTGGTTAATTTTTCTTTCTCTTTTTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTGAATATAAGTAATTGGTTAATTTTTCTTTCTCTTTTTTTTTG  450

seq1  GGGGGCGGGGATTGAGACAGGGTTTCTCTGTGTAGCCCTGGGTGTCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCGGGGATTGAGACAGGGTTTCTCTGTGTAGCCCTGGGTGTCCTGG  500

seq1  AACTTACTCTGTAGACCAGGCTAGCCTCAAACTCAGAAATCCGCCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTCTGTAGACCAGGCTAGCCTCAAACTCAGAAATCCGCCTGCCT  550

seq1  CTGCCTCTGTGCCACCACTCCCTGGCAGATTATTTAATTTTAAAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGTGCCACCACTCCCTGGCAGATTATTTAATTTTAAAAAAATT  600

seq1  AAGGCATACACTATTATAATTATTTCCCATGTATTATACATTTAATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATACACTATTATAATTATTTCCCATGTATTATACATTTAATAACA  650

seq1  TTTTTAAATCTTTTTTTTAAAGATTTATTTATTTTATTTATATGAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATCTTTTTTTTAAAGATTTATTTATTTTATTTATATGAGAACA  700

seq1  CTGTAGCTGTCTTCAGTCACAACATTAGAGGGCTCCCATTAAAGATGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGTCTTCAGTCACAACATTAGAGGGCTCCCATTAAAGATGGTT  750

seq1  GTGAGCCACCATGTGGTTGCTGGGAATTGAATTTAGGACCGCTGGAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCATGTGGTTGCTGGGAATTGAATTTAGGACCGCTGGAAGAG  800

seq1  CAGTCAGTACTCTTAACTGCCGAGTCATCTC-TCCAGCCCTGACATTATT  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGTCAGTACTCTTAACTGCCGAGTCATCTCTTCCAGCCCTGACATTATT  850

seq1  ATTTTAAATATATTTGACCTGTAGCATCATAATGCATCCCCAGTCAAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATATATTTGACCTGTAGCATCATAATGCATCCCCAGTCAAGTT  900

seq1  TCCTCAATTCTTCTTAATCATACACTTTTTGATCATACAACCCTACAGAT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCTCAATTCTTCTTAATCATACACTTTTTGATCATAC-ACCCTACAGAT  949

seq1  TTAGTGAAGAAAGTCATTCTTGGTCCACTGTTAGCAAAAAGATGGCTTAT  999
      |||||||||||||||||||||||| ||||| |||| ||||||||||||||
seq2  TTAGTGAAGAAAGTCATTCTTGGT-CACTG-TAGC-AAAAGATGGCTTAT  996

seq1  ATTGAAGCTGCTGGGTGGTGG-ACATCATTTTCATTAGGAGCCCTTAGAG  1048
      | |  |||||||||||||||| ||||||||||||||||||| || |||||
seq2  AATTGAGCTGCTGGGTGGTGGTACATCATTTTCATTAGGAGGCC-TAGAG  1045

seq1  CAGTGCCTCTCAACCTGTGGGTCCTGACCGCTTTGCTGGTTGCACATCGC  1098
      ||||||||||||| |||||||| ||||||||  |||||| ||| ||||||
seq2  CAGTGCCTCTCAA-CTGTGGGT-CTGACCGC--TGCTGG-TGC-CATCGC  1089

seq1  ATATCCTG  1106
      ||||||||
seq2  ATATCCTG  1097

seq1: chr15_81364157_81364438
seq2: B6Ng01-117M02.g_71_352 (reverse)

seq1  CTGTCCTGGAACTCACTTTGTAGACCAGGCAAACCTCTTAACTCAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCACTTTGTAGACCAGGCAAACCTCTTAACTCAGATAT  50

seq1  CTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGAGTATGCTACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGAGTATGCTACTAC  100

seq1  CGCCCAGTCCAAAAATTTTAATAAATAATAATAACAAATTTCTGCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGTCCAAAAATTTTAATAAATAATAATAACAAATTTCTGCCTGCT  150

seq1  CTCTCTGCTCCATTCATCTTCCTATTCATACAGCTACATCCCTCAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCTCCATTCATCTTCCTATTCATACAGCTACATCCCTCAACCTT  200

seq1  TGCCTGGGTTGTCCTTTTCTTTCTTTTCTTTTTCTCTTTTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGTTGTCCTTTTCTTTCTTTTCTTTTTCTCTTTTTTTTTTTTTT  250

seq1  TTGAGACAACTAATATAGTCCTGGATGGCTTG  282
      ||||||||||||||||||||||||||||||||
seq2  TTGAGACAACTAATATAGTCCTGGATGGCTTG  282