BAC Information

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BAC

Clone NameB6Ng01-118O08
Chromosome15 (Build37)
Map Location 16,384,363 - 16,481,511
singlet/doubletdoublet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118O08.bB6Ng01-118O08.g
ACCDH923254DH923255
length1,0111,066
definitionDH923254|Mus musculus domesticus DNA, BAC clone: B6Ng01-118O08, 5' end.DH923255|Mus musculus domesticus DNA, BAC clone: B6Ng01-118O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,384,363 - 16,385,121)(16,480,453 - 16,481,511)
sequence
gaattctcatacctaggggaactgattctccctccattagccacaaacaa
ctgctcagtagctagtggtgggcattgtgacatttcacctatctacacta
ccatgtccaaaggtattgtttttccagtcatactgtcatacttactgaaa
cacactattccagtgtactcggtgcagctttgctgtcatatatagaaaat
gctctcttagcagaaattgtggtactcttactttttttttcctaattctt
tttcaaattttaatcccccttttcttttaataagagcaataggccaccca
tattaatgagagtggagatagaggtcaaatccccagtgtgcaggtaaagg
agccatgtacaggattagctcttaggctcacaggcttttacccagagcaa
ccctgacctgctcccgtgtcgtttttcctggggagaaggacacttggaca
ctcaaccttcttgaaagatgacatgtctccctagaataggcttatatatg
ccacagagcccttctactgcagtgcttagccgtgcaactctctcgggctg
ctgaagcacactcactctatcccgtgcaatgagactagcctcgtggggtg
caagagctgaatggccagcgacctattgcttaagcatagatatatcatat
atcaggggaagcaccatgttctagagctgcaagtgcctgggcaataacca
ccttgtctctcctagtttgggccttaagcttacagaccaaccaaagaagc
aacactaatccacagcaaagtgtatctccaaataatcccacccataccca
ttctttaaagaaggaaaatgctgaggagatccaattgggtaatccttttg
gtcagggacaggtccaagcgcgtggagttgacctgaatgatggcaattcc
cgaagggtctgttcaaattcagccgtccaattctgtacatatactgaaaa
aagactttttaacaattagctgccctagtaaatttttcatactgaatgga
gtaccgcataa
gaattctactgaattggaatgaaaacactgggcatctttgtcttatttag
attttacaggaaattccttgagtttttctctattttatttcataggatat
tggaatatctttgttatatacagttttaattaagttttgttttatctcct
ctttagtttcttcaatatattttccatgaagtggcatttaatttggttaa
agaccatttcttcctctattgagaggatatggtgatggctgtcctttaca
acatttaggtaatggattacttttattgatttaggtgtattgggccatcc
ctgcatgtctggcataaaacaaactagagcaaaatgagtgatctttttca
tgttgtagtggcttaagttaaatgtcttctgttgtatctggcatttgaac
aaatggtcctcaattggtggcactgctttgcaccgttgggatttgttggc
ttttaaaaaaggtatgtcactggggatgggattagagcttataaaataat
gtcctcatgccatttccccagaaggaggataataactagatggttaaaaa
agtttaaagataatttataaaaacattttaaggtactgtaaatcacaatc
tctaaataatacccaaagtttttctgtattgtctgagtttcctaaagaaa
actgaaagtttaaaaaatatatactatttggcaaaaacaaaaaacaaaaa
aacaaaaaaaaccaaaacaaaacaaaaccaaaaaaaaaaaacaaacaaaa
aacaaaccaggagagaaaaaaaataatgtctcttttcttatgtctactgg
ttagcatttaatttgatttcctcccctatgctccaaatggcaccattaat
ttgactacttgagctttctctgagtttttattaattctttgagaaattca
taaaaaaattaattaatagaattcagattttattttcccaagatttggtc
ctttattcctattcacacaatttggtgtttttatttatttatttttttta
gatatttttcatttacatttcagtgctatccaaaatagttccccatcctc
ggccccacttcctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16384363_16385121
seq2: B6Ng01-118O08.b_46_804

seq1  GAATTCTCATACCTAGGGGAACTGATTCTCCCTCCATTAGCCACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATACCTAGGGGAACTGATTCTCCCTCCATTAGCCACAAACAA  50

seq1  CTGCTCAGTAGCTAGTGGTGGGCATTGTGACATTTCACCTATCTACACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTAGCTAGTGGTGGGCATTGTGACATTTCACCTATCTACACTA  100

seq1  CCATGTCCAAAGGTATTGTTTTTCCAGTCATACTGTCATACTTACTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCAAAGGTATTGTTTTTCCAGTCATACTGTCATACTTACTGAAA  150

seq1  CACACTATTCCAGTGTACTCGGTGCAGCTTTGCTGTCATATATAGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATTCCAGTGTACTCGGTGCAGCTTTGCTGTCATATATAGAAAAT  200

seq1  GCTCTCTTAGCAGAAATTGTGGTACTCTTACTTTTTTTTTCCTAATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTAGCAGAAATTGTGGTACTCTTACTTTTTTTTTCCTAATTCTT  250

seq1  TTTCAAATTTTAATCCCCCTTTTCTTTTAATAAGAGCAATAGGCCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTTTAATCCCCCTTTTCTTTTAATAAGAGCAATAGGCCACCCA  300

seq1  TATTAATGAGAGTGGAGATAGAGGTCAAATCCCCAGTGTGCAGGTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGAGAGTGGAGATAGAGGTCAAATCCCCAGTGTGCAGGTAAAGG  350

seq1  AGCCATGTACAGGATTAGCTCTTAGGCTCACAGGCTTTTACCCAGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTACAGGATTAGCTCTTAGGCTCACAGGCTTTTACCCAGAGCAA  400

seq1  CCCTGACCTGCTCCCGTGTCGTTTTTCCTGGGGAGAAGGACACTTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCTGCTCCCGTGTCGTTTTTCCTGGGGAGAAGGACACTTGGACA  450

seq1  CTCAACCTTCTTGAAAGATGACATGTCTCCCTAGAATAGGCTTATATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTTCTTGAAAGATGACATGTCTCCCTAGAATAGGCTTATATATG  500

seq1  CCACAGAGCCCTTCTACTGCAGTGCTTAGCCGTGCAACTCTCTCGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGCCCTTCTACTGCAGTGCTTAGCCGTGCAACTCTCTCGGGCTG  550

seq1  CTGAAGCACACTCACTCTATCCCGTGCAATGAGACTAGCCTCGTGGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCACACTCACTCTATCCCGTGCAATGAGACTAGCCTCGTGGGGTG  600

seq1  CAAGAGCTGAATGGCCAGCGACCTATTGCTTAAGCATAGATATATCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTGAATGGCCAGCGACCTATTGCTTAAGCATAGATATATCATAT  650

seq1  ATCAGGGGAAGCACCATGTTCTAGAGCTGCAAGTGCCTGGGCAATAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGGAAGCACCATGTTCTAGAGCTGCAAGTGCCTGGGCAATAACCA  700

seq1  CCTTGTCTCTCCTAGTTTGGGCCTTAAGCTTACAGACCAACCAAAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTCTCCTAGTTTGGGCCTTAAGCTTACAGACCAACCAAAGAAGC  750

seq1  AACACTAAT  759
      |||||||||
seq2  AACACTAAT  759

seq1: chr15_16480453_16481511
seq2: B6Ng01-118O08.g_91_1137 (reverse)

seq1  GGTAGGGAAGTGGGGGCGGGAGGGTATGGGGGACTTATTTTGGGATAGCA  50
      |||| |||||||||| |  ||||  |||||| || |||||| ||||||||
seq2  GGTA-GGAAGTGGGGCC--GAGG--ATGGGGAAC-TATTTT-GGATAGCA  43

seq1  CTGGAAATGTAAATGAAAAAATTATCTAAAAAAAAATAAAATAAATAAAA  100
      || |||||||||||||||||  |||||||||||||   |||||||| |||
seq2  CT-GAAATGTAAATGAAAAA--TATCTAAAAAAAA--TAAATAAAT-AAA  87

seq1  AACACAAAATTGTGTGAATAGGGATAAAGGACCAGATCTTGGGAAAAT-A  149
      ||||| |||||||||||||||| ||||||||||| ||||||||||||| |
seq2  AACACCAAATTGTGTGAATAGGAATAAAGGACCAAATCTTGGGAAAATAA  137

seq1  GATCTGAATTCTATTAATTAA-TGTTTTATGAATTTCTCAAAGAATTAAT  198
       |||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  AATCTGAATTCTATTAATTAATTTTTTTATGAATTTCTCAAAGAATTAAT  187

seq1  AAAAACTCAGAGAAAGCTCAAGTAGTCAAATTAATGGTGCCATTTGGAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCAGAGAAAGCTCAAGTAGTCAAATTAATGGTGCCATTTGGAGC  237

seq1  ATAGGGGAGGAAATCAAATTAAATGCTAACCAGTAGACATAAGAAAAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGAGGAAATCAAATTAAATGCTAACCAGTAGACATAAGAAAAGAG  287

seq1  ACATTATTTTTTTTCTCTCCTGGTTTGTTTTTTGTTTGTTTTTTTTTTTT  348
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACATTATTTTTTTTCTCTCCTGGTTTGTTTTTTGTTTG-TTTTTTTTTTT  336

seq1  TGGTTTTGTTTTGTTTTGGTTTTTTTTGTTTTTTTGTTTTTTGTTTTTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTTTTGTTTTGGTTTTTTTTGTTTTTTTGTTTTTTGTTTTTGC  386

seq1  CAAATAGTATATATTTTTTAAACTTTCAGTTTTCTTTAGGAAACTCAGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTATATATTTTTTAAACTTTCAGTTTTCTTTAGGAAACTCAGAC  436

seq1  AATACAGAAAAACTTTGGGTATTATTTAGAGATTGTGATTTACAGTACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAAAAACTTTGGGTATTATTTAGAGATTGTGATTTACAGTACCT  486

seq1  TAAAATGTTTTTATAAATTATCTTTAAACTTTTTTAACCATCTAGTTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTTTATAAATTATCTTTAAACTTTTTTAACCATCTAGTTATT  536

seq1  ATCCTCCTTCTGGGGAAATGGCATGAGGACATTATTTTATAAGCTCTAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTCTGGGGAAATGGCATGAGGACATTATTTTATAAGCTCTAAT  586

seq1  CCCATCCCCAGTGACATACCTTTTTTAAAAGCCAACAAATCCCAACGGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCCAGTGACATACCTTTTTTAAAAGCCAACAAATCCCAACGGTG  636

seq1  CAAAGCAGTGCCACCAATTGAGGACCATTTGTTCAAATGCCAGATACAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGTGCCACCAATTGAGGACCATTTGTTCAAATGCCAGATACAAC  686

seq1  AGAAGACATTTAACTTAAGCCACTACAACATGAAAAAGATCACTCATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACATTTAACTTAAGCCACTACAACATGAAAAAGATCACTCATTTT  736

seq1  GCTCTAGTTTGTTTTATGCCAGACATGCAGGGATGGCCCAATACACCTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTTTGTTTTATGCCAGACATGCAGGGATGGCCCAATACACCTAA  786

seq1  ATCAATAAAAGTAATCCATTACCTAAATGTTGTAAAGGACAGCCATCACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAAAGTAATCCATTACCTAAATGTTGTAAAGGACAGCCATCACC  836

seq1  ATATCCTCTCAATAGAGGAAGAAATGGTCTTTAACCAAATTAAATGCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCTCAATAGAGGAAGAAATGGTCTTTAACCAAATTAAATGCCAC  886

seq1  TTCATGGAAAATATATTGAAGAAACTAAAGAGGAGATAAAACAAAACTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGAAAATATATTGAAGAAACTAAAGAGGAGATAAAACAAAACTTA  936

seq1  ATTAAAACTGTATATAACAAAGATATTCCAATATCCTATGAAATAAAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTGTATATAACAAAGATATTCCAATATCCTATGAAATAAAATA  986

seq1  GAGAAAAACTCAAGGAATTTCCTGTAAAATCTAAATAAGACAAAGATGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACTCAAGGAATTTCCTGTAAAATCTAAATAAGACAAAGATGCC  1036

seq1  CAGTGTTTTCA  1059
      |||||||||||
seq2  CAGTGTTTTCA  1047