BAC Information

Click to search

BAC

Clone NameB6Ng01-119F07
Chromosome15 (Build37)
Map Location 39,987,544 - 40,144,932
singlet/doubletdoublet
Overlap geneLOC670013
Upstream geneLOC671215, Rims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119F07.bB6Ng01-119F07.g
ACCDH923577DH923578
length9641,128
definitionDH923577|Mus musculus domesticus DNA, BAC clone: B6Ng01-119F07, 5' end.DH923578|Mus musculus domesticus DNA, BAC clone: B6Ng01-119F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,987,544 - 39,988,181)(40,143,798 - 40,144,932)
sequence
gaattccatacaatatattttgatcacattctttctctgccctcagcttc
tccaagagtcactactcatgcaacttcaagttctttctctttcttaaaac
caaactgaaacaaaacaccacccccccaaatcaaaacaaacaacaccaca
cacacacacacacacacacacacacacacacacgaacccaagacaaaaac
atgaagtctgatttgtgctggtcagctcttgaacatgaggcctgctcagg
agtgcggttgagatactcagtgtcattccctgaaagtaaatgggttttct
cacccctagtacacattaaccacaaatagcttcttggccagggtctgaac
tttgtgcttatttcctgttccctgtgggaatttgtcttgaagaagatctt
atgcacactgtcacagtgtctgtgaattcatgtttatcatccctgttgtg
tctggaagatactgtttcctgggttgtctaccatgtctgtctcttacaag
catttggcctcctttcccacatacatccctgagccacaaggggaagggta
tgataaagacatcccatttgggattggatactgcaaagtttctcattacc
tgtatatcaaccaacttggggtctctgtgttaattatcaaccactgaaag
aaaacaccactttgataaatattgggacatgtagtgatctatgggtatag
cactgtatcataggtgtttcttggcttccacagtcatttagcagaatagt
agtaggttttcctaagtgtatcaggtatgggtttcactatgtggagagga
tgttaaatttggcttaaaaaatggttggttactcacattaacagttgcac
ctgcattgcatcagtgggcacagcttgtaggcaggttagcgttctagccc
tcagggctgagggatgattctccttttcttctggcatatgagtgttagta
ggagtgaagcttcc
gaattcacttttgttctgttgagatcctggttatctttgagtaccacatg
tcagaggccatttcagaatcactgcagtgatatgtgagacctaaccacta
ttattgttcatcctcatgccatgaattgaagactcctgaatgttacaacc
atttacatttttggtcagtggcagtgacatgactccaagacctttggcac
aggacaggtaaaaattatcaagatcacttcaagtattagggctgtgattt
gtttttcccttaatttagtcttccttcaactatttatttatatgagattt
gagaatttctgaaagtaaaaagcaaatggaaaataccttagctcatgcaa
taagaactttgaacttatagggggaaaatgatatataaccaagaaaatat
ttctaggtacagattcctgtttaggatgggaattgcaagcttataaatga
tcactcaaaatggattatctttacataggatccattaagttaagtgccta
agaaaatatgtgtgtgtgttgtgtttaatatgtaaatacttacatattat
atacatgtctgtgtgtatgtgtgttacatgaagttatactaatatgtgtg
ccaaaacagtccctctgtatctcacactaagttatttctctaagccatgt
catggctcaggccacatgggtctcatttgcctttgagaagtatccagtat
tccaggtacactgaaatctgtgatccttaaagtatcaaagacatccttgt
attggaaaaaacaaacaaacaaacaaataacaacaaaacttttcatatta
cttgcatgtctcctgttttctgttataaatcacagctgttttcccagaca
caaaataaatgggtggaaaagtgagccaaaccaaaataaacagacatatt
gcagaacactcaggatgctgcagcagagagattgctggctggaagcttac
aaagcatggggtgctacatcattagccaagaatcctcaggcagtttgctc
ttctgctctcattggcagaaaacaacaataagcactcgggcacagaaata
tatgcataatcggaaatggttatactatcatatctgaatctataattaag
aaatatttgaaggtacaggcatttgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39987544_39988181
seq2: B6Ng01-119F07.b_47_684

seq1  GAATTCCATACAATATATTTTGATCACATTCTTTCTCTGCCCTCAGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAATATATTTTGATCACATTCTTTCTCTGCCCTCAGCTTC  50

seq1  TCCAAGAGTCACTACTCATGCAACTTCAAGTTCTTTCTCTTTCTTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGTCACTACTCATGCAACTTCAAGTTCTTTCTCTTTCTTAAAAC  100

seq1  CAAACTGAAACAAAACACCACCCCCCCAAATCAAAACAAACAACACCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAAACAAAACACCACCCCCCCAAATCAAAACAAACAACACCACA  150

seq1  CACACACACACACACACACACACACACACACACGAACCCAAGACAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGAACCCAAGACAAAAAC  200

seq1  ATGAAGTCTGATTTGTGCTGGTCAGCTCTTGAACATGAGGCCTGCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCTGATTTGTGCTGGTCAGCTCTTGAACATGAGGCCTGCTCAGG  250

seq1  AGTGCGGTTGAGATACTCAGTGTCATTCCCTGAAAGTAAATGGGTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGGTTGAGATACTCAGTGTCATTCCCTGAAAGTAAATGGGTTTTCT  300

seq1  CACCCCTAGTACACATTAACCACAAATAGCTTCTTGGCCAGGGTCTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTAGTACACATTAACCACAAATAGCTTCTTGGCCAGGGTCTGAAC  350

seq1  TTTGTGCTTATTTCCTGTTCCCTGTGGGAATTTGTCTTGAAGAAGATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTTATTTCCTGTTCCCTGTGGGAATTTGTCTTGAAGAAGATCTT  400

seq1  ATGCACACTGTCACAGTGTCTGTGAATTCATGTTTATCATCCCTGTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACTGTCACAGTGTCTGTGAATTCATGTTTATCATCCCTGTTGTG  450

seq1  TCTGGAAGATACTGTTTCCTGGGTTGTCTACCATGTCTGTCTCTTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGATACTGTTTCCTGGGTTGTCTACCATGTCTGTCTCTTACAAG  500

seq1  CATTTGGCCTCCTTTCCCACATACATCCCTGAGCCACAAGGGGAAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCCTCCTTTCCCACATACATCCCTGAGCCACAAGGGGAAGGGTA  550

seq1  TGATAAAGACATCCCATTTGGGATTGGATACTGCAAAGTTTCTCATTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGACATCCCATTTGGGATTGGATACTGCAAAGTTTCTCATTACC  600

seq1  TGTATATCAACCAACTTGGGGTCTCTGTGTTAATTATC  638
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCAACCAACTTGGGGTCTCTGTGTTAATTATC  638

seq1: chr15_40143798_40144932
seq2: B6Ng01-119F07.g_69_1196 (reverse)

seq1  GTGCAAATGCTGGTTACCTTCAAATAATTTCTAATTTATAGATACAGATA  50
      ||||||||||  | ||||||||||| |||||| | |||||||| ||||||
seq2  GTGCAAATGCCTG-TACCTTCAAAT-ATTTCTTAATTATAGATTCAGATA  48

seq1  TGAATAAGTAATAACCATTTCCGATTATGCATATATTTCTGTGCCCCGAG  100
      |||   ||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TGA--TAGT-ATAACCATTTCCGATTATGCATATATTTCTGTG-CCCGAG  94

seq1  TGC-TATTGTTTGTTTTCTGCCAATGAGAGCCAGAGAGGCAAACTGCCCT  149
      ||| ||||| |||||||||||||||||||| ||||   |||||||| |||
seq2  TGCTTATTG-TTGTTTTCTGCCAATGAGAG-CAGAAGAGCAAACTG-CCT  141

seq1  GAGGATTCTTGGCTAATGAGTGTTAGCACCCCATGCTTTGTAAGCTTCCA  199
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  GAGGATTCTTGGCTAATGA-TG-TAGCACCCCATGCTTTGTAAGCTTCCA  189

seq1  GCCAGCAATCTCTCTGCTGCAGCATCCTGAGTGTTCTGCAATATGTCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAATCTCTCTGCTGCAGCATCCTGAGTGTTCTGCAATATGTCTGT  239

seq1  TTATTTTGGTTTGGCTCACTTTTCCA-CCATTTATTTTGTGTCTGGG-AA  297
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  TTATTTTGGTTTGGCTCACTTTTCCACCCATTTATTTTGTGTCTGGGAAA  289

seq1  ACAGCTGTGATTTATAACAGAAAACAGGAGACATGCAAGTAATATG-AAA  346
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAGCTGTGATTTATAACAGAAAACAGGAGACATGCAAGTAATATGAAAA  339

seq1  GTTTTGTTGTTATTTGTTTGTTTGTTTGTTTTTTCCAATACAAGGATGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGTTATTTGTTTGTTTGTTTGTTTTTTCCAATACAAGGATGTC  389

seq1  TTTGATACTTTAAGGATCACAGATTTCAGTGTACCTGGAATACTGGATAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATACTTTAAGGATCACAGATTTCAGTGTACCTGGAATACTGGATAC  439

seq1  TTCTCAAAGGCAAATGAGACCCATGTGGCCTGAGCCATGACATGGCTTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGGCAAATGAGACCCATGTGGCCTGAGCCATGACATGGCTTAG  489

seq1  AGAAATAACTTAGTGTGAGATACAGAGGGACTGTTTTGGCACACATATTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAACTTAGTGTGAGATACAGAGGGACTGTTTTGGCACACATATTA  539

seq1  GTATAACTTCATGTAACACACATACACACAGACATGTATATAATATGTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACTTCATGTAACACACATACACACAGACATGTATATAATATGTAA  589

seq1  GTATTTACATATTAAACACAACACACACACATATTTTCTTAGGCACTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACATATTAAACACAACACACACACATATTTTCTTAGGCACTTAA  639

seq1  CTTAATGGATCCTATGTAAAGATAATCCATTTTGAGTGATCATTTATAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGGATCCTATGTAAAGATAATCCATTTTGAGTGATCATTTATAAG  689

seq1  CTTGCAATTCCCATCCTAAACAGGAATCTGTACCTAGAAATATTTTCTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATTCCCATCCTAAACAGGAATCTGTACCTAGAAATATTTTCTTG  739

seq1  GTTATATATCATTTTCCCCCTATAAGTTCAAAGTTCTTATTGCATGAGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATATCATTTTCCCCCTATAAGTTCAAAGTTCTTATTGCATGAGCT  789

seq1  AAGGTATTTTCCATTTGCTTTTTACTTTCAGAAATTCTCAAATCTCATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTTTCCATTTGCTTTTTACTTTCAGAAATTCTCAAATCTCATAT  839

seq1  AAATAAATAGTTGAAGGAAGACTAAATTAAGGGAAAAACAAATCACAGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAGTTGAAGGAAGACTAAATTAAGGGAAAAACAAATCACAGCC  889

seq1  CTAATACTTGAAGTGATCTTGATAATTTTTACCTGTCCTGTGCCAAAGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACTTGAAGTGATCTTGATAATTTTTACCTGTCCTGTGCCAAAGGT  939

seq1  CTTGGAGTCATGTCACTGCCACTGACCAAAAATGTAAATGGTTGTAACAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTCATGTCACTGCCACTGACCAAAAATGTAAATGGTTGTAACAT  989

seq1  TCAGGAGTCTTCAATTCATGGCATGAGGATGAACAATAATAGTGGTTAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTCTTCAATTCATGGCATGAGGATGAACAATAATAGTGGTTAGG  1039

seq1  TCTCACATATCACTGCAGTGATTCTGAAATGGCCTCTGACATGTGGTACT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATATCACTGCAGTGATTCTGAAATGGCCTCTGACATGTGGTACT  1089

seq1  CAAAGATAACCAGGATCTCAACAGAACAAAAGTGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAACCAGGATCTCAACAGAACAAAAGTGAATTC  1128