BAC Information

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BAC

Clone NameB6Ng01-119O17
Chromosome15 (Build37)
Map Location 73,907,324 - 74,008,064
singlet/doubletdoublet
Overlap geneEG666113, LOC100041307
Upstream geneChrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966
Downstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119O17.bB6Ng01-119O17.g
ACCDH924004DH924005
length1,170922
definitionDH924004|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O17, 5' end.DH924005|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,907,324 - 73,908,502)(74,007,143 - 74,008,064)
sequence
gaattccaactcagcagatcagtagtttcaattctgaacaagacacttaa
agtcctgtgactcaacttccttttgggcaaaatagggacagaaaaatcca
cttctgtggatgtgggtgagatgcctcttgaccctggcttcagtgggtgt
tctgcaagtattgatctttgctcctcttctgtgaatgagtgagttaatga
tgcactctctgtcggcgtattaattccatcagcatttattggcacatttt
ccctggcttactaattgttccttaggaacactgaccttattcaagtaaat
gcctggttatttgtgccctcttaaggtctcagaaataacatcctgttggg
gaatcaaggttctgcctgtgcacagagccatggctagcagaaaaaaactt
gatgatcgtttctcttctttttgctagttgcttctccctgggtgaggagt
gtttcttcctacccctccaacttttaagaagacaagaggctgagaaaaac
cactttgtcaagctataattgatttcagacggctaatttattagccaggg
ctgttgtctaggttggagtttttgtgcactgaaggtgttgggtggtgatg
aaataaagcttccagagctcatctgttatcgttgttgcaggtctctggga
cacaagaaagcagaccccttggtgctctgcctagcagtggagaaataaaa
aggatttttgatgtgtcctcagatggacaaaccttttcaaataggagact
gtgataatcctagctttgaccttgagccctcacttctattccttgttctc
tcctgtgtctcacagatccccattcctaagtgacctaaaaatccaccacc
attccttagattcatcctgacacagcacagccctgttcatccccgatgct
cacatctctgttgtcctgccaacctttccaggcttcacagcaatactact
ggcacaagctagccagttgctcacttggatgactgaagtatcccaaatgg
tcccatctgctccagctcatcccctcatcaacctccactcagctccctga
ttacatttataagatgcaagtcttgcccaaatctttcaaggcttccgacc
tccaatcacttctcatgaggataaaatccatagacctcattctagcatta
agccttccagtcttcctaca
gaattctgtgctctgtctctctgcagtagtcagctgctggattctctgct
cggtccctttgacatttggtgtgtgtctcatggtgtgtgtctctgtgata
actccagtgtgtgtgagttgacacgcgcacgcatgcacacacacacacac
acacacacacacgtaataatacaaggcctaccatatgacctcttttactg
caggagattttagtcacctccagcctcctgtattcctaaacatagctcct
gactctacagccccagcagcctgctgccacctagttcacacctgctgtgg
gctgtgactggggattcccctgggagagaggccagacaaatgcagagttt
gcccaaattaaatccctgatctctggggcggcattgcctccagcttctgc
ctgctttagtcactctccggtgccttccaacagtcattctcatccttccc
cagagtttataattgcttttggcaagaaggttagtctaatataagccact
tcccattctgggagctgggagcttcgcatgtatttctgttgtacatgtgt
gtgcagcctgccagttctcagcacagttacccacactcaccctttccctt
gcttctccttccccggtgagtcaccatgcttctccgacaaaggcagaaca
cagaacacccctccctagacagtctcatcacccactctgcaggaactacc
ctactgcaccgtggccttgtggcttctagaatcttttgcacctagggatg
gccatgtgccttctccagtgagcctggacctgagacacctgaggatgtcc
tattctcaataccttctttgatcgtgtgctgtggccctgctacaggaggg
catacgctgaagtttttgtccctgtgttctgaatgacctttgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73907324_73908502
seq2: B6Ng01-119O17.b_45_1214

seq1  GAATTCCAACTCAGCAGATCAGTAGTTTCAATTCTGAACAAGACACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCAGCAGATCAGTAGTTTCAATTCTGAACAAGACACTTAA  50

seq1  AGTCCTGTGACTCAACTTCCTTTTGGGCAAAATAGGGACAGAAAAATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTGACTCAACTTCCTTTTGGGCAAAATAGGGACAGAAAAATCCA  100

seq1  CTTCTGTGGATGTGGGTGAGATGCCTCTTGACCCTGGCTTCAGTGGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGATGTGGGTGAGATGCCTCTTGACCCTGGCTTCAGTGGGTGT  150

seq1  TCTGCAAGTATTGATCTTTGCTCCTCTTCTGTGAATGAGTGAGTTAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGTATTGATCTTTGCTCCTCTTCTGTGAATGAGTGAGTTAATGA  200

seq1  TGCACTCTCTGTCGGCGTATTAATTCCATCAGCATTTATTGGCACATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTCTGTCGGCGTATTAATTCCATCAGCATTTATTGGCACATTTT  250

seq1  CCCTGGCTTACTAATTGTTCCTTAGGAACACTGACCTTATTCAAGTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTTACTAATTGTTCCTTAGGAACACTGACCTTATTCAAGTAAAT  300

seq1  GCCTGGTTATTTGTGCCCTCTTAAGGTCTCAGAAATAACATCCTGTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTATTTGTGCCCTCTTAAGGTCTCAGAAATAACATCCTGTTGGG  350

seq1  GAATCAAGGTTCTGCCTGTGCACAGAGCCATGGCTAGCAGAAAAAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGGTTCTGCCTGTGCACAGAGCCATGGCTAGCAGAAAAAAACTT  400

seq1  GATGATCGTTTCTCTTCTTTTTGCTAGTTGCTTCTCCCTGGGTGAGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCGTTTCTCTTCTTTTTGCTAGTTGCTTCTCCCTGGGTGAGGAGT  450

seq1  GTTTCTTCCTACCCCTCCAACTTTTAAGAAGACAAGAGGCTGAGAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCCTACCCCTCCAACTTTTAAGAAGACAAGAGGCTGAGAAAAAC  500

seq1  CACTTTGTCAAGCTATAATTGATTTCAGACGGCTAATTTATTAGCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTCAAGCTATAATTGATTTCAGACGGCTAATTTATTAGCCAGGG  550

seq1  CTGTTGTCTAGGTTGGAGTTTTTGTGCACTGAAGGTGTTGGGTGGTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCTAGGTTGGAGTTTTTGTGCACTGAAGGTGTTGGGTGGTGATG  600

seq1  AAATAAAGCTTCCAGAGCTCATCTGTTATCGTTGTTGCAGGTCTCTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCTTCCAGAGCTCATCTGTTATCGTTGTTGCAGGTCTCTGGGA  650

seq1  CACAAGAAAGCAGACCCCTTGGTGCTCTGCCTAGCAGTGGAGAAATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAAGCAGACCCCTTGGTGCTCTGCCTAGCAGTGGAGAAATAAAA  700

seq1  AGGATTTTTGATGTGTCCTCAGATGGACAAACCTTTTCAAATAGGAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTTGATGTGTCCTCAGATGGACAAACCTTTTCAAATAGGAGACT  750

seq1  GTGATAATCCTAGCTTTGACCTTGAGCCCTCACTTCTATTCCTTGTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATCCTAGCTTTGACCTTGAGCCCTCACTTCTATTCCTTGTTCTC  800

seq1  TCCTGTGTCTCACAGATCCCCATTCCTAAGTGACCTAAAAATCCACCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTCTCACAGATCCCCATTCCTAAGTGACCTAAAAATCCACCACC  850

seq1  ATTCCTTAGATTTCATCCTGACACAGCACAGCCCTGTTCATCCCCGATGC  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTAGA-TTCATCCTGACACAGCACAGCCCTGTTCATCCCCGATGC  899

seq1  TCACATCTCTGTTGTTCCTGCCAACC-TTCCAGGC-TCACAGCAATACTA  948
      |||||||||||||| ||||||||||| |||||||| ||||||||||||||
seq2  TCACATCTCTGTTG-TCCTGCCAACCTTTCCAGGCTTCACAGCAATACTA  948

seq1  CTGGCACAAGCTAGCCAGTTGCTCACCTGGATGACTGAAGTATCCCAAAT  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGGCACAAGCTAGCCAGTTGCTCACTTGGATGACTGAAGTATCCCAAAT  998

seq1  GGTTCCCATCTGCTCCAGCTCATCCCCTCATCCAACCTCCACTCAGCTCC  1048
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GG-TCCCATCTGCTCCAGCTCATCCCCTCAT-CAACCTCCACTCAGCTCC  1046

seq1  CTGATTACATTTTATAAGATGCAAGTC-TGCCCACATCTTCCATGCCTTC  1097
      ||||||||| ||||||||||||||||| |||||| ||||| || | ||||
seq2  CTGATTACA-TTTATAAGATGCAAGTCTTGCCCAAATCTTTCAAGGCTTC  1095

seq1  GAACCTCCCAATCACTCTGCATGAGGATAAAATCCATAGACCTCAATTCT  1147
        |||| |||||||||   ||||||||||||||||||||||||| |||||
seq2  CGACCT-CCAATCACTTCTCATGAGGATAAAATCCATAGACCTC-ATTCT  1143

seq1  AGCATTTTAAAGCCTTTCCAGTTCTTCCTACA  1179
      ||||||   ||||| |||||| ||||||||||
seq2  AGCATT---AAGCC-TTCCAG-TCTTCCTACA  1170

seq1: chr15_74007143_74008064
seq2: B6Ng01-119O17.g_67_988 (reverse)

seq1  CACACACACACACACACACACACACACACACAAAGGTCATTCAGAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAAAGGTCATTCAGAACACA  50

seq1  GGGACAAAAACTTCAGCGTATGCCCTCCTGTAGCAGGGCCACAGCACACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAAACTTCAGCGTATGCCCTCCTGTAGCAGGGCCACAGCACACG  100

seq1  ATCAAAGAAGGTATTGAGAATAGGACATCCTCAGGTGTCTCAGGTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAAGGTATTGAGAATAGGACATCCTCAGGTGTCTCAGGTCCAGG  150

seq1  CTCACTGGAGAAGGCACATGGCCATCCCTAGGTGCAAAAGATTCTAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGAGAAGGCACATGGCCATCCCTAGGTGCAAAAGATTCTAGAAG  200

seq1  CCACAAGGCCACGGTGCAGTAGGGTAGTTCCTGCAGAGTGGGTGATGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGCCACGGTGCAGTAGGGTAGTTCCTGCAGAGTGGGTGATGAGA  250

seq1  CTGTCTAGGGAGGGGTGTTCTGTGTTCTGCCTTTGTCGGAGAAGCATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGGGAGGGGTGTTCTGTGTTCTGCCTTTGTCGGAGAAGCATGGT  300

seq1  GACTCACCGGGGAAGGAGAAGCAAGGGAAAGGGTGAGTGTGGGTAACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACCGGGGAAGGAGAAGCAAGGGAAAGGGTGAGTGTGGGTAACTGT  350

seq1  GCTGAGAACTGGCAGGCTGCACACACATGTACAACAGAAATACATGCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAACTGGCAGGCTGCACACACATGTACAACAGAAATACATGCGAA  400

seq1  GCTCCCAGCTCCCAGAATGGGAAGTGGCTTATATTAGACTAACCTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGCTCCCAGAATGGGAAGTGGCTTATATTAGACTAACCTTCTTG  450

seq1  CCAAAAGCAATTATAAACTCTGGGGAAGGATGAGAATGACTGTTGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCAATTATAAACTCTGGGGAAGGATGAGAATGACTGTTGGAAGG  500

seq1  CACCGGAGAGTGACTAAAGCAGGCAGAAGCTGGAGGCAATGCCGCCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGAGAGTGACTAAAGCAGGCAGAAGCTGGAGGCAATGCCGCCCCAG  550

seq1  AGATCAGGGATTTAATTTGGGCAAACTCTGCATTTGTCTGGCCTCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGGATTTAATTTGGGCAAACTCTGCATTTGTCTGGCCTCTCTCC  600

seq1  CAGGGGAATCCCCAGTCACAGCCCACAGCAGGTGTGAACTAGGTGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAATCCCCAGTCACAGCCCACAGCAGGTGTGAACTAGGTGGCAGC  650

seq1  AGGCTGCTGGGGCTGTAGAGTCAGGAGCTATGTTTAGGAATACAGGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTGGGGCTGTAGAGTCAGGAGCTATGTTTAGGAATACAGGAGGC  700

seq1  TGGAGGTGACTAAAATCTCCTGCAGTAAAAGAGGTCATATGGTAGGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGACTAAAATCTCCTGCAGTAAAAGAGGTCATATGGTAGGCCTT  750

seq1  GTATTATTACGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGTGCGCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTACGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGTGCGCGT  800

seq1  GTCAACTCACACACACTGGAGTTATCACAGAGACACACACCATGAGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTCACACACACTGGAGTTATCACAGAGACACACACCATGAGACAC  850

seq1  ACACCAAATGTCAAAGGGACCGAGCAGAGAATCCAGCAGCTGACTACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAATGTCAAAGGGACCGAGCAGAGAATCCAGCAGCTGACTACTGC  900

seq1  AGAGAGACAGAGCACAGAATTC  922
      ||||||||||||||||||||||
seq2  AGAGAGACAGAGCACAGAATTC  922