BAC Information

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BAC

Clone NameB6Ng01-120K17
Chromosome15 (Build37)
Map Location 74,943,570 - 74,944,635
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546
Downstream geneI830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120K17.bB6Ng01-120K17.g
ACCDH924555DH924556
length1,0641,170
definitionDH924555|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K17, 5' end.DH924556|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctatactcagaagggaggactgtcacctggggtttcagccatt
aaccctcctgccttctccaaccacaagtcgtctcacaaaatgctaaaata
tagaggaaacagattcactgatgagggactccatgacagtgattccatga
tggggtgagacttggtggtgacttatctgcacagaaattatgcatgattt
gtaagtgacctcacccatcctctggaacactgccccataacctcactgga
tggtaaaattgggaggaattgtcacttgaatctttttgtttgtttgtttt
tcaagacagggtttctctgaatagccctagctgtcctggagctccctttg
tagatcaggctggcctcgaactcagaaatctgcctgcctctgcctgccga
gtactgggactaaaggggtgcgctaccacgcccagcttgtcacttaagtc
tttaataaatgccctatgtttgcagatgcttgctgtctgctgctctttgc
ttcacatacacttgttcatgcattagccaatgtctagggctacacatgaa
gaaattagacagacaccttttcttctttgctctcttcctcctaccactct
gctgggttatgcgatgttcctggcgaacatggtctgcttgcatgatagat
tatagggtaacaaggcaggaatttttaatggtgctaggggagaagctcag
gagagtaacaatttaaacagaaatattgtggattgcatgaatttccggag
ggttgaccccgaggatttgaagcagtctttgggtttggttttcagtcctg
gaaaggctgatgctgcactgttccttgagaattctgacttcaccatacag
agtctctctttcttcaatcgatccagaacaaaacccagaacatagacaat
ggggttggatgtacatgtggaccggagatgacacaaagaccgagactcta
tgttcagccctgtgactttcatcaggagcatctgcctgatggtctctgag
ctctggcttccttccctttgctacctgcctgcctaagtggaatgcaatca
gcttcaccattctg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccaccttacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaatgaggaacattcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacaggaggatccagtaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacgtggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagagtgaacactgaagtgtggacactatgccactccttagaattgggaa
caaaacacccatggaaaggagttacagagacaaagtttggagctgagacg
aaaggatggaccatctagaaactgccatatccagggattcaccccataat
cagcttccaaacgctgagaccattgcatacactagcagatttatcgaaag
gacccagatgtagctgtctcttgtgagactatgctggggcctagcaacac
agaagtggatgctcacagtcagttttggatgatcacagggctccaatgga
ggagcttagagaagtacccaggagcttaaggaatctgcaaccatattagg
tggaacaacattatgaactaaccagtaccccgggaattctgtactttagc
tgcatttgtatcaaaaattgcctatcgccatcactgaaagaagccatgac
tgcaactttatggccagtcagggaagcccaggccaataaatgggtaggat
ctgtacgacaatgtgcgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_74943570_74944635
seq2: B6Ng01-120K17.b_50_1113 (reverse)

seq1  CAGAATGAGTGAAGCTGATTGCA-TCCACTTAAGCAGGCAAGGTAGCAAA  49
      ||||||| ||||||||||||||| |||||||| |||||| ||||||||||
seq2  CAGAATG-GTGAAGCTGATTGCATTCCACTTAGGCAGGC-AGGTAGCAAA  48

seq1  GGGAAGGAAGCCAGAGGCTCAGAGACCATCAGGCAGATGCTCCTGATGGA  99
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  GGGAAGGAAGCCAGA-GCTCAGAGACCATCAGGCAGATGCTCCTGATGAA  97

seq1  AGTCACAGGGCTGAACATAGAGTCTCGGTCTTTGTGTCATCTCCGGTCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGGGCTGAACATAGAGTCTCGGTCTTTGTGTCATCTCCGGTCCA  147

seq1  CATGTACATCCAACCCCATTGTCTATGTTCTGGGTTTTGTTCTGGATCGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACATCCAACCCCATTGTCTATGTTCTGGGTTTTGTTCTGGATCGA  197

seq1  TTGAAGAAAGAGAGACTCTGTATGGTGAAGTCAGAATTCTCAAGGAACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAGAGAGACTCTGTATGGTGAAGTCAGAATTCTCAAGGAACAG  247

seq1  TGCAGCATCAGCCTTTCCAGGACTGAAAACCAAACCCAAAGACTGCTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATCAGCCTTTCCAGGACTGAAAACCAAACCCAAAGACTGCTTCA  297

seq1  AATCCTCGGGGTCAACCCTCCGGAAATTCATGCAATCCACAATATTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCGGGGTCAACCCTCCGGAAATTCATGCAATCCACAATATTTCTG  347

seq1  TTTAAATTGTTACTCTCCTGAGCTTCTCCCCTAGCACCATTAAAAATTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGTTACTCTCCTGAGCTTCTCCCCTAGCACCATTAAAAATTCC  397

seq1  TGCCTTGTTACCCTATAATCTATCATGCAAGCAGACCATGTTCGCCAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTTACCCTATAATCTATCATGCAAGCAGACCATGTTCGCCAGGA  447

seq1  ACATCGCATAACCCAGCAGAGTGGTAGGAGGAAGAGAGCAAAGAAGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGCATAACCCAGCAGAGTGGTAGGAGGAAGAGAGCAAAGAAGAAAA  497

seq1  GGTGTCTGTCTAATTTCTTCATGTGTAGCCCTAGACATTGGCTAATGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGTCTAATTTCTTCATGTGTAGCCCTAGACATTGGCTAATGCAT  547

seq1  GAACAAGTGTATGTGAAGCAAAGAGCAGCAGACAGCAAGCATCTGCAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTGTATGTGAAGCAAAGAGCAGCAGACAGCAAGCATCTGCAAAC  597

seq1  ATAGGGCATTTATTAAAGACTTAAGTGACAAGCTGGGCGTGGTAGCGCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCATTTATTAAAGACTTAAGTGACAAGCTGGGCGTGGTAGCGCAC  647

seq1  CCCTTTAGTCCCAGTACTCGGCAGGCAGAGGCAGGCAGATTTCTGAGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGTCCCAGTACTCGGCAGGCAGAGGCAGGCAGATTTCTGAGTTC  697

seq1  GAGGCCAGCCTGATCTACAAAGGGAGCTCCAGGACAGCTAGGGCTATTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGATCTACAAAGGGAGCTCCAGGACAGCTAGGGCTATTCA  747

seq1  GAGAAACCCTGTCTTGAAAAACAAACAAACAAAAAGATTCAAGTGACAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTTGAAAAACAAACAAACAAAAAGATTCAAGTGACAAT  797

seq1  TCCTCCCAATTTTACCATCCAGTGAGGTTATGGGGCAGTGTTCCAGAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCAATTTTACCATCCAGTGAGGTTATGGGGCAGTGTTCCAGAGGA  847

seq1  TGGGTGAGGTCACTTACAAATCATGCATAATTTCTGTGCAGATAAGTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGGTCACTTACAAATCATGCATAATTTCTGTGCAGATAAGTCAC  897

seq1  CACCAAGTCTCACCCCATCATGGAATCACTGTCATGGAGTCCCTCATCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTCTCACCCCATCATGGAATCACTGTCATGGAGTCCCTCATCAG  947

seq1  TGAATCTGTTTCCTCTATATTTTAGCATTTTGTGAGACGACTTGTGGTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGTTTCCTCTATATTTTAGCATTTTGTGAGACGACTTGTGGTTG  997

seq1  GAGAAGGCAGGAGGGTTAATGGCTGAAACCCCAGGTGACAGTCCTCCCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAGGAGGGTTAATGGCTGAAACCCCAGGTGACAGTCCTCCCTT  1047

seq1  CTGAGTATAGAGAATTC  1066
      |||||||||||||||||
seq2  CTGAGTATAGAGAATTC  1064