BAC Information

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BAC

Clone NameB6Ng01-123H18
Chromosome15 (Build37)
Map Location 5,114,573 - 5,115,783
singlet/doubletsinglet
Overlap genePrkaa1
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281
Downstream geneTtc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123H18.bB6Ng01-123H18.g
ACCDH926636DH926637
length1,2031,218
definitionDH926636|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H18, 5' end.DH926637|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccagtggacaggaatagggccttgaaggatgagaaagggaaa
actttaggtagaaattaaccacattgagaaaaaacagactagcgtgctta
atgagtctgatcctgattaaagagagacagtgcgtaacatgaaagaatga
agaatgcaaatagcttccgactgaaggggagccaggctctcttctctcct
aggtgtggggcctttcagcagggcgctgtgccagtcagataacgtgagag
tgcgtatgggcaggggacggtgctcagaatttgtgcttagaactaaacgt
cttcaaggttccttcaaacactaagccctgtaagtctacttcctagctcc
ttcaaaatccctattcctttctactgcaggcacatcagaaaccaacacac
gagcacaactgaaatgtggccagggttgaagaacaaggcctacatcgttt
aagtacttactgacgtattttgggaggcccacataggaaagcgtgttagg
aaagtttaggaagcacattaagggtgagcacagaccaggcacaccttcaa
tcccagcacttgggagacagagacaggggcatggctatgcactggaggcc
agcctgatctacatggcagtcacagtggcatagtgtgaccctgtctccaa
aaaaataaataaaagtttgttttgctaaaaaccttaaatctgaggataat
aaattttagggacttacgtgaactctgtaaatcactagtaaatcacgtga
ccttgaacaaatactcaacaagtagtctttatatccatgtcaattaaatg
ggatcagggatcacttttgaggtccttttcttctcattagcctatgatgc
tacacaaattcatgctaaggggacttattactaaacagacctctgaaatt
gcttgctgacactataatgcaataaggggacagagagttaccaaactgtg
tacagaattaaatgagaactgcttacccttccattttacagatataatca
aatagctctcctccaggagacatattccatcaacatgaaaatatcagatg
gtgtactgatgacctggtacctggtgggagaaaacattatctactaatat
gaaacgtgtattcatcattcagttaagattactagcacctataagataac
aggtactgtgctagcttcttaagtctgttgggggagacaaagccaatccc
tgt
gaattcctaagcctgataaacagcttcagtgaagtagctggatataaaat
taactcaaacaagtcaatggcctttctctacacaaaggacaaacaggctg
agaaagaaattagggaaacaacacccttttcaatagccacaaataatata
aaatgcctaggcatgactctaactaaggaagtgaaagatctgtatgacaa
gaacttcatgtctctgaagaaagaaattaaagaagatctcagaagatgga
aagatctcccatgctcatggatcggcaggatcaatatcgtaaaaatggct
atcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattcc
aactcaattcttcaacgaattagaaagggcaattggcagattcatctgga
ataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacc
tctggtggaatcaccatgcccgacctaaagctgtaatacagagcaattgt
gataaaaaaaaaaaaactgcatggtactggtatagcgacagacaagtaga
ccagtggaacagaattgaagacccagagatgaacccacacacctatggtc
acttaatctttgacaagggagctaaaaccatccagtggaaaaaagacagc
attttcaacaaatggtgctggcacaactggctgttatcatgtagaagaat
gcgaattgatccatttctatctccttgtactaaggtcaaatctaagtgga
ttaaggaactccacataaaaccagagacactgaaacttatagaggagaaa
gtagggaaatgcctcaaagatatgggtacaggggaaaaattcctgaatag
aacagcaatggcttgtgctgtaagatcgagaatcgataaatgggacctca
taaaattgcaaagcttctgcaggcaaaaggacaccatcaataagacaaaa
agaccaccacagatgggaaaggatctttacctatcccaaatcgacaggga
ctatatcatattatataagactcaggaatgtagactccataaaatcaata
accatgaaaatgggctcaactgaacaagaatctcaacgaggatacggaat
gcagagagaccactgaaaatgttccacacctcctaatgtcagaaatccaa
tcaaagcctggaattccctcacagctgaatgctagttcaatattcaggtc
acgagagatgctgtccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5114573_5115783
seq2: B6Ng01-123H18.b_46_1248 (reverse)

seq1  ACAGGAGATTGGCTTTG-CTCCCCC-ACAGACTTCTAGCAGCTAGCACAG  48
      ||||| ||||||||||| ||||||| ||||||||  || |||||||||||
seq2  ACAGG-GATTGGCTTTGTCTCCCCCAACAGACTT-AAGAAGCTAGCACAG  48

seq1  TACCTGGTATCTTATAGGTGCTTAGTAAATCTTTACTGAATGGATGAATA  98
      |||||| |||||||||||||| |||| |||||| ||||||| ||||||||
seq2  TACCTGTTATCTTATAGGTGC-TAGT-AATCTTAACTGAAT-GATGAATA  95

seq1  CACGTGTTTTAATATTAGTAGATAATGTTTTCTCTCACCAGGTACCAGGT  148
      ||||   ||| ||||||||||||||||||||||| |||||||||||||||
seq2  CACG---TTTCATATTAGTAGATAATGTTTTCTCCCACCAGGTACCAGGT  142

seq1  CATCAGTACACCATCTGATATTTTCATGGTGATGGAATATGTCT-CTGGA  197
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  CATCAGTACACCATCTGATATTTTCATGTTGATGGAATATGTCTCCTGGA  192

seq1  GGAGAGCTATTTGATTATATCTGTAAAAATGGAAGGGTAAGCAGTTCTCA  247
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGAGAGCTATTTGATTATATCTGT-AAAATGGAAGGGTAAGCAGTTCTCA  241

seq1  TTTAATTCTGTACACAGTTTGGTAACTCTCTGTCCCCCTTATTGCATTAT  297
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTAATTCTGTACACAGTTTGGTAACTCTCTGT-CCCCTTATTGCATTAT  290

seq1  AGTGTCAGCAAGCAATTTTCAGAGGTCTGTTTAGTAATAAGTCCCCTTAG  347
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGCAAGCAA-TTTCAGAGGTCTGTTTAGTAATAAGTCCCCTTAG  339

seq1  CATGAATTTGTGTAGCATCATAGGCTAATGAGAAGGAAAGGACCTCAAAA  397
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATGAATTTGTGTAGCATCATAGGCTAATGAGAAGAAAAGGACCTCAAAA  389

seq1  GTGATCCCTGATCCCATTTAATTGACATGGATATAAAGACTACTTGTTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCCTGATCCCATTTAATTGACATGGATATAAAGACTACTTGTTGA  439

seq1  GTATTTGTTCAAGGTCACGTGATTTACTAGTGATTTACAGAGTTCACGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTTCAAGGTCACGTGATTTACTAGTGATTTACAGAGTTCACGTA  489

seq1  AGTCCCTAAAATTTATTATCCTCAGATTTAAGGTTTTTAGCAAAACAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTAAAATTTATTATCCTCAGATTTAAGGTTTTTAGCAAAACAAAC  539

seq1  TTTTATTTATTTTTTTGGAGACAGGGTCACACTATGCCACTGTGACTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTTTTTTGGAGACAGGGTCACACTATGCCACTGTGACTGCC  589

seq1  ATGTAGATCAGGCTGGCCTCCAGTGCATAGCCATGCCCCTGTCTCTGTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATCAGGCTGGCCTCCAGTGCATAGCCATGCCCCTGTCTCTGTCT  639

seq1  CCCAAGTGCTGGGATTGAAGGTGTGCCTGGTCTGTGCTCACCCTTAATGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGATTGAAGGTGTGCCTGGTCTGTGCTCACCCTTAATGT  689

seq1  GCTTCCTAAACTTTCCTAACACGCTTTCCTATGTGGGCCTCCCAAAATAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAAACTTTCCTAACACGCTTTCCTATGTGGGCCTCCCAAAATAC  739

seq1  GTCAGTAAGTACTTAAACGATGTAGGCCTTGTTCTTCAACCCTGGCCACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAAGTACTTAAACGATGTAGGCCTTGTTCTTCAACCCTGGCCACA  789

seq1  TTTCAGTTGTGCTCGTGTGTTGGTTTCTGATGTGCCTGCAGTAGAAAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGTGCTCGTGTGTTGGTTTCTGATGTGCCTGCAGTAGAAAGGA  839

seq1  ATAGGGATTTTGAAGGAGCTAGGAAGTAGACTTACAGGGCTTAGTGTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGATTTTGAAGGAGCTAGGAAGTAGACTTACAGGGCTTAGTGTTTG  889

seq1  AAGGAACCTTGAAGACGTTTAGTTCTAAGCACAAATTCTGAGCACCGTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTTGAAGACGTTTAGTTCTAAGCACAAATTCTGAGCACCGTCC  939

seq1  CCTGCCCATACGCACTCTCACGTTATCTGACTGGCACAGCGCCCTGCTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCATACGCACTCTCACGTTATCTGACTGGCACAGCGCCCTGCTGA  989

seq1  AAGGCCCCACACCTAGGAGAGAAGAGAGCCTGGCTCCCCTTCAGTCGGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCCACACCTAGGAGAGAAGAGAGCCTGGCTCCCCTTCAGTCGGAA  1039

seq1  GCTATTTGCATTCTTCATTCTTTCATGTTACGCACTGTCTCTCTTTAATC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGCATTCTTCATTCTTTCATGTTACGCACTGTCTCTCTTTAATC  1089

seq1  AGGATCAGACTCATTAAGCACGCTAGTCTGTTTTTTCTCAATGTGGTTAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGACTCATTAAGCACGCTAGTCTGTTTTTTCTCAATGTGGTTAA  1139

seq1  TTTCTACCTAAAGTTTTCCCTTTCTCATCCTTCAAGGCCCTATTCCTGTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCTAAAGTTTTCCCTTTCTCATCCTTCAAGGCCCTATTCCTGTC  1189

seq1  CACTGGAGGAATTC  1211
      ||||||||||||||
seq2  CACTGGAGGAATTC  1203