BAC Information

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BAC

Clone NameB6Ng01-125D08
Chromosome15 (Build37)
Map Location 103,178,865 - 103,335,583
singlet/doubletdoublet
Overlap geneItga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b
Upstream geneAaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385
Downstream genePpp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125D08.bB6Ng01-125D08.g
ACCDH927907DH927908
length1,101991
definitionDH927907|Mus musculus domesticus DNA, BAC clone: B6Ng01-125D08, 5' end.DH927908|Mus musculus domesticus DNA, BAC clone: B6Ng01-125D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,334,466 - 103,335,583)(103,178,865 - 103,179,865)
sequence
gaattctgtctgtaacccctgactcctgtctttcttctcaaccactttct
cacctgacactctctcctcagtttagtgaccactgacagagcatcctttt
ctatcgagacccactcaacaaaaatcaattcaatccgtttttccatttcc
tcatcctcgaactcattccaaagctgcgcttcacagaatccagcaaattg
cattggccagaggcagcaaaggaggaggacaaaggagcacgtttggattc
taagccttgttgcccactgtgcctcattctccctaaggactctgtaaaca
gcaagcacattaatcagactcacctgcccaatataaagccatcagctcat
cactgttggtaaaatatttgaagaacaagacagacatgggcatctgtcca
ctccctacctccattccctctctgtcagaacccagagaggaatggctcaa
tacttgctgctgagggaactggagaagaacagggtttgggaatggttacc
attttgtttcctatctattctcctctttttctagagctgcagggaatctc
ttagggagatgtgcatcttctcttatcttctgattaagaatccacagagt
gttagagattacccaacggcacctgcctgggaggtaaacatggtacatga
cccaatcctgttctgctttgaggggcaggaagaaaacttccttttctctc
tcagaatggtgcatgaaacacctgagttcgtcctctcctctttcacgcct
ctccatgtactctagtcccacaataaggaatgaagcttacatgtgcttgg
agatcctgagagatcctatataaataaaaaggctttgattaagccaatca
tgttgttcctatcaatcaatcagtcttcttcactatcaatcacccggtct
tctagcgcccaggtgacggttccacccactcctccagaccattaaatatg
caatttcagacacaaagcagatgatctcttagtgcaggcatccctcatct
gttcctgtggatgcaggggagacgaccatcccaagaagattatatagacc
cacagttggccaatttctcttctgtgcactaatcgccgcaacgtgtgcaa
g
gaattctcactatgaggctttggttgtcccagaactcactttatagatca
aactggcttttaatttgtggttgtcctcctgttccagccacttctaaggg
atggtgattaagtttacaggtgtaaccatcatgcctgggtagctttattt
ttttatttttaatttttttttaatttattttttatggtagataagtacac
tgttgctgtcttcagacacaccagaagagggcgtcagatgtcattatgag
tggatgtgagccaccatgtggttgctgggaattaaactcaggacctctgg
aagagcagtcagtgctcttacctgctgagccatctcaccagcccatcttc
tttgtcactttatactttattgctttccacccgtctttgttgtcactcag
ggtctctctcatgtaagtacttgagaataatcttgaacttccagtcctct
tgcctcacttcacaagtgttggggctgccttaccaggcttcagcactttt
ctttctttctttttattttttaagacagggttttactgtgtaagtcctgg
ctgtcttggaactcactccgttgtagcccaggctagcttcaaactcagag
atcctccccactctgcctctgagggctgggattaaaggtaggtgccacca
caacccggtttctttttactttttttttttttttccgagacagggtttct
ctgtgtagccctggctgtcctcgaactcagaatctgcctgcctctgccct
gactcccaaatgctgggataaaggcgtgtgccaccatgcccaactctttt
tacttctttattgtctaccagctttcactagatgcaagctcccagaatgt
gggggactttgtgatttcatttggtgtggggtttttcctagtctaccgct
tacttcattaatgctgtttatgacaacacactctcaagagggccagagac
gttctcacaggacaaggtggccagatctgatggccaccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103334466_103335583
seq2: B6Ng01-125D08.b_49_1149 (reverse)

seq1  CTTGCACACCGATGCGGCGGATCTAGTGCACAG-AGAGATATTTGTGCCA  49
      |||||||| || |||||| ||| |||||||||| ||||| |||   ||||
seq2  CTTGCACA-CGTTGCGGC-GAT-TAGTGCACAGAAGAGAAATT--GGCCA  45

seq1  ACCTGTGGGTTCTATAT-ATCTTCTTTGGGATTGGTCGTTCTTCCCCCTG  98
      | ||||||| ||||||| |||||| |||||| |||||| |||  ||||||
seq2  A-CTGTGGG-TCTATATAATCTTC-TTGGGA-TGGTCG-TCT--CCCCTG  88

seq1  CATCCCACAGGGAACAGGATGAGGGTGCCCTGCACTTAAGAAGATCATCT  148
      ||| ||||| |||||| ||||||||   ||||||| |||| |||||||||
seq2  CAT-CCACA-GGAACA-GATGAGGGATGCCTGCAC-TAAG-AGATCATCT  133

seq1  GCTTTGGTGTCTGGAAATTGCATATTTAATGGTCTGGAGGAGTGGGTGGA  198
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTTT-GTGTCT-GAAATTGCATATTTAATGGTCTGGAGGAGTGGGTGGA  181

seq1  ACCGTCACCTGGGCGCTAGAGGACCGGGTGATTGATAGTGAAGAAGACTG  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCGTCACCTGGGCGCTAGAAGACCGGGTGATTGATAGTGAAGAAGACTG  231

seq1  ATTGATTGATAGGAACAACATGATTGGCTTAATCAAAGCCTTTTTATTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGATAGGAACAACATGATTGGCTTAATCAAAGCCTTTTTATTTA  281

seq1  TATAGGATCTCTCAGGATCTCCAAGCACATGTAAGCTTCATTCCTTATTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATCTCTCAGGATCTCCAAGCACATGTAAGCTTCATTCCTTATTG  331

seq1  TGGGACTAGAGTACATGGAGAGGCCTGAAAGAGGAGAGGACGAACTCAGG  398
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGGACTAGAGTACATGGAGAGGCGTGAAAGAGGAGAGGACGAACTCAGG  381

seq1  TGTTTCATGCACCATTCTGAGAGAGAAAAGGAAGTTTTCTTCCTGCCCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATGCACCATTCTGAGAGAGAAAAGGAAGTTTTCTTCCTGCCCCT  431

seq1  CAAAGCAGAACAGGATTGGGTCATGTACCATGTTTACCTCCCAGGCAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGAACAGGATTGGGTCATGTACCATGTTTACCTCCCAGGCAGGT  481

seq1  GCCGTTGGGTAATCTCTAACACTCTGTGGATTCTTAATCAGAAGATAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTGGGTAATCTCTAACACTCTGTGGATTCTTAATCAGAAGATAAGA  531

seq1  GAAGATGCACATCTCCCTAAGAGATTCCCTGCAGCTCTAGAAAAAGAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCACATCTCCCTAAGAGATTCCCTGCAGCTCTAGAAAAAGAGGA  581

seq1  GAATAGATAGGAAACAAAATGGTAACCATTCCCAAACCCTGTTCTTCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATAGGAAACAAAATGGTAACCATTCCCAAACCCTGTTCTTCTCC  631

seq1  AGTTCCCTCAGCAGCAAGTATTGAGCCATTCCTCTCTGGGTTCTGACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTCAGCAGCAAGTATTGAGCCATTCCTCTCTGGGTTCTGACAGA  681

seq1  GAGGGAATGGAGGTAGGGAGTGGACAGATGCCCATGTCTGTCTTGTTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATGGAGGTAGGGAGTGGACAGATGCCCATGTCTGTCTTGTTCTT  731

seq1  CAAATATTTTACCAACAGTGATGAGCTGATGGCTTTATATTGGGCAGGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTTACCAACAGTGATGAGCTGATGGCTTTATATTGGGCAGGTG  781

seq1  AGTCTGATTAATGTGCTTGCTGTTTACAGAGTCCTTAGGGAGAATGAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATTAATGTGCTTGCTGTTTACAGAGTCCTTAGGGAGAATGAGGC  831

seq1  ACAGTGGGCAACAAGGCTTAGAATCCAAACGTGCTCCTTTGTCCTCCTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGCAACAAGGCTTAGAATCCAAACGTGCTCCTTTGTCCTCCTCC  881

seq1  TTTGCTGCCTCTGGCCAATGCAATTTGCTGGATTCTGTGAAGCGCAGCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCCTCTGGCCAATGCAATTTGCTGGATTCTGTGAAGCGCAGCTT  931

seq1  TGGAATGAGTTCGAGGATGAGGAAATGGAAAAACGGATTGAATTGATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAGTTCGAGGATGAGGAAATGGAAAAACGGATTGAATTGATTTT  981

seq1  TGTTGAGTGGGTCTCGATAGAAAAGGATGCTCTGTCAGTGGTCACTAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTGGGTCTCGATAGAAAAGGATGCTCTGTCAGTGGTCACTAAAC  1031

seq1  TGAGGAGAGAGTGTCAGGTGAGAAAGTGGTTGAGAAGAAAGACAGGAGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAGAGTGTCAGGTGAGAAAGTGGTTGAGAAGAAAGACAGGAGTC  1081

seq1  AGGGGTTACAGACAGAATTC  1118
      ||||||||||||||||||||
seq2  AGGGGTTACAGACAGAATTC  1101

seq1: chr15_103178865_103179865
seq2: B6Ng01-125D08.g_66_1056

seq1  GAATTCTCACTATGAGGCTTTGGTTGTCCCAGAACTCACTTTATAGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTATGAGGCTTTGGTTGTCCCAGAACTCACTTTATAGATCA  50

seq1  AACTGGCTTTTAATTTGTGGTTGTCCTCCTGTTCCAGCCACTTCTAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTTTTAATTTGTGGTTGTCCTCCTGTTCCAGCCACTTCTAAGGG  100

seq1  ATGGTGATTAAGTTTACAGGTGTAACCATCATGCCTGGGTAGCTTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATTAAGTTTACAGGTGTAACCATCATGCCTGGGTAGCTTTATTT  150

seq1  TTTTATTTTTAATTTTTTTTTAATTTATTTTTTATGGTAGATAAGTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTAATTTTTTTTTAATTTATTTTTTATGGTAGATAAGTACAC  200

seq1  TGTTGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATGTCATTATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATGTCATTATGAG  250

seq1  TGGATGTGAGCCACCATGTGGTTGCTGGGAATTAAACTCAGGACCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGAGCCACCATGTGGTTGCTGGGAATTAAACTCAGGACCTCTGG  300

seq1  AAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTCACCAGCCCATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTCACCAGCCCATCTTC  350

seq1  TTTGTCACTTTATACTTTATTGCTTTCCACCCGTCTTTGTTGTCACTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACTTTATACTTTATTGCTTTCCACCCGTCTTTGTTGTCACTCAG  400

seq1  GGTCTCTCTCATGTAAGTACTTGAGAATAATCTTGAACTTCCAGTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTCATGTAAGTACTTGAGAATAATCTTGAACTTCCAGTCCTCT  450

seq1  TGCCTCACTTCACAAGTGTTGGGGCTGCCTTACCAGGCTTCAGCACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACTTCACAAGTGTTGGGGCTGCCTTACCAGGCTTCAGCACTTTT  500

seq1  CTTTCTTTCTTTTTATTTTTTAAGACAGGGTTTTACTGTGTAAGTCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTTTATTTTTTAAGACAGGGTTTTACTGTGTAAGTCCTGG  550

seq1  CTGTCTTGGAACTCACTCCGTTGTAGCCCAGGCTAGCTTCAAACTCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGGAACTCACTCCGTTGTAGCCCAGGCTAGCTTCAAACTCAGAG  600

seq1  ATCCTCCCCACTCTGCCTCTGAGGGCTGGGATTAAAGGTAGGTGCCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCCACTCTGCCTCTGAGGGCTGGGATTAAAGGTAGGTGCCACCA  650

seq1  CAACCCGGTTTCTTTTTACTTTTTTTTTTTTTTTCCGAGACAGGGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCGGTTTCTTTTTACTTTTTTTTTTTTTTTCCGAGACAGGGTTTCT  700

seq1  CTGTGTAGCCCTGGCTGTCCTCGAACTCAGAAATCTGCCTGCCTCTGCCC  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGTGTAGCCCTGGCTGTCCTCGAACTCAG-AATCTGCCTGCCTCTGCCC  749

seq1  TGACTCCCAAATGCTGGGATTAAAGGCGTGTGCCACCATGCCCAACTCTT  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGACTCCCAAATGCTGGGA-TAAAGGCGTGTGCCACCATGCCCAACTCTT  798

seq1  TTTACTTC-TTATTGTCTACCAGCTTTCACTAGATGCAAGCTCCCAGAAT  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTTTATTGTCTACCAGCTTTCACTAGATGCAAGCTCCCAGAAT  848

seq1  GT-GGGGACTTTGTGAATTTCATTTGGTGTGGGGTTTTTCCTAGGTCTAA  898
      || |||||||||||| ||||||||||||||||||||||||||| ||||| 
seq2  GTGGGGGACTTTGTG-ATTTCATTTGGTGTGGGGTTTTTCCTA-GTCTAC  896

seq1  CGCTTACTTCATTAAATGCTGTTTATGAACAAACACACTCTCAAAGAGGG  948
      ||||||||||||| ||||||||||||||   ||||||||||| |||||||
seq2  CGCTTACTTCATT-AATGCTGTTTATGA--CAACACACTCTC-AAGAGGG  942

seq1  CCAGAGGACAGTTCTCACAGGACAAGGTGGCACAGATCTGATAGCACACC  998
      ||||| ||| ||||||||||||||||||||| |||||||||| || ||||
seq2  CCAGA-GAC-GTTCTCACAGGACAAGGTGGC-CAGATCTGATGGC-CACC  988

seq1  ATG  1001
      |||
seq2  ATG  991