BAC Information

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BAC

Clone NameB6Ng01-125F11
Chromosome15 (Build37)
Map Location 9,454,388 - 9,609,916
singlet/doubletdoublet
Overlap geneIl7r, C230086A09Rik
Upstream geneLOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl
Downstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125F11.bB6Ng01-125F11.g
ACCDH928005DH928006
length9761,098
definitionDH928005|Mus musculus domesticus DNA, BAC clone: B6Ng01-125F11, 5' end.DH928006|Mus musculus domesticus DNA, BAC clone: B6Ng01-125F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,608,966 - 9,609,916)(9,454,388 - 9,455,486)
sequence
gaattcactaacatgatttaggaagcctctcccgaaacatgaacaggtac
ttagtcatagggtgggactatataaacccaaagtatttaacaaaggctaa
gatcagagatatgatgaaagaaagaagtctgttctgtcagagcctaagaa
gaaattataacatttgtcagaagagtatgctgcggttctctgcttgggtt
gaatagttttgagtagatatagaatctcatttgctataaagtgactgagt
gaagatcaggctctggggaaggaagcccacattcagtgatatcacactac
ttgtgcagaatcaaccccctgcagaagtcatagttattaattctggacaa
aacaataaaagctaatcactagcgtgaacttgtgagaaagaaaggctaag
aatcaaggaagaagaatagagctggaagtttggagtctgatcaccaaatg
atgtccaagagctgtatgagtatgtgtgttctcagaggtcaatctctcat
agatatgagtgattggacctggatcattctcattgcaagtgttagaaaga
aagttggggaatttggggtgttggagctgcagaaaattgatacagaccct
tgaatgtgtccctgactccagaagtggggtaagtcctcagtattttcatt
agctagcatgaccacatgttgttttaactctaagcaccctgaatggaata
tttcttttcaatcagctccctcctaacattcttcatttcttttcacagct
tagcatgcgagctcaacttggtgcaaagtcagagttgatgcttagaagag
gaaagagcattccagacatacttctgggtcagcatcctggtaaatgctat
aaagtatgtattgcagtttcttttctcgtacctattttaaatattctttt
ttttttttctgcatggaataagtggtatgcctgcattggttgtgagagtt
gtgcatgtaatttgtgagagtgtgca
gaattcatgttacataacttgctgcaagtcaaaaggttattaagcattgg
cattgggactggaaggcaagtaattacgctgcataatggaattttaaaat
agagcactgccttaagggagtgttctaggagaagaagtgtttatttagat
tgctgtgaatatggagggatgtagaatttccaagatcaaaccaccatttg
tatatgcctctgagaactaaaaaatgaattgagagttgcctcactttaat
ttctggcaaaggacaaagtatttcagaaagttttgagaacctaggaaatt
ttagagtttgatacttaggacagacactccttcctttgcaagtcccggaa
ggaacacagagagagcgagagagagagacaggagatggattcctaagcac
catggaaactatcttcctcaccatatttgaaattccagattagctgtgtt
gatgtctgagtcattaaaagcacaagtcaataaatgttgacttccatcca
cttccaactggctgtggcaccagaaggagtgatcgtccgcgtctgcatct
tctaggtctcctgagaagaacaaaacacagctgttaaggagaaaaggcaa
atgactgtatcagctgaaaatctgattcccttaataaaatgtcacttgag
tggcagacatgaaggagagaatatatatcgatatatttatatacctatat
ataatttatctaaaggaagatattctaaggacagaaaaaaagtttcaatg
tgctctctctgtctttctgtctctgcctctgcctctgtctctctgtctct
gtctctctctcacacacacacaaatacacatacctgaaacacatatgcca
aacccgatgtgcacatacagattacaaagtgttctaacaaaaagaaatca
tcatagtggaggaacaagttccaggtatatttaaacagttctacattgga
ctagtatgtggaaatataaggggcaaagaacaacccgtttccttgttata
atggagctcctttgctaccacttaaaactgtatttagaaagtatttatgt
ggaggattatattcccccacttcgaccaaatatcttacatgtttcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_9608966_9609916
seq2: B6Ng01-125F11.b_47_1022 (reverse)

seq1  ---------------------TGCAC-ACTCTCACAACC-ATGCAGGCAT  27
                           ||||| |||||||||||| ||||||||||
seq2  TGCACACTCTCACAAATTACATGCACAACTCTCACAACCAATGCAGGCAT  50

seq1  A-CACTTA-TCCATGCAGGAAAAAAAAAAAAGAATATATTAAATAGGTAC  75
      | |||||| |||||||| ||||||||||||||||||| | ||||||||||
seq2  ACCACTTATTCCATGCA-GAAAAAAAAAAAAGAATATTTAAAATAGGTAC  99

seq1  GAGAAAAGAAACTGCAATACATACTTTATAGCATTTACCAGGATGCTGA-  124
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGAAAAGAAACTGCAATACATACTTTATAGCATTTACCAGGATGCTGAC  149

seq1  CCAGAAGTATGTCTGGAATGCTCTTTCCTCTTCTAAGCATCAACTCTGAC  174
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTATGTCTGGAATGCTCTTTCCTCTTCTAAGCATCAACTCTGAC  199

seq1  TTTGCACCAAGTTGAGCTCGCATGCTAAGCTGTGAAAAGAAATGAAGAAT  224
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACCAAGTTGAGCTCGCATGCTAAGCTGTGAAAAGAAATGAAGAAT  249

seq1  GTTAGGAGGGAGCTGATTGAAAAGAAATATTCCATTCAGGGTGCTTAGAG  274
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAGGGAGCTGATTGAAAAGAAATATTCCATTCAGGGTGCTTAGAG  299

seq1  TTAAAACAACATGTGGTCATGCTAGCTAATGAAAATACTGAGGACTTACC  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAACATGTGGTCATGCTAGCTAATGAAAATACTGAGGACTTACC  349

seq1  CCACTTCTGGAGTCAGGGACACATTCAAGGGTCTGTATCAATTTTCTGCA  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTGGAGTCAGGGACACATTCAAGGGTCTGTATCAATTTTCTGCA  399

seq1  GCTCCAACACCCCAAATTCCCCAACTTTCTTTCTAACACTTGCAATGAGA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAACACCCCAAATTCCCCAACTTTCTTTCTAACACTTGCAATGAGA  449

seq1  ATGATCCAGGTCCAATCACTCATATCTATGAGAGATTGACCTCTGAGAAC  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCAGGTCCAATCACTCATATCTATGAGAGATTGACCTCTGAGAAC  499

seq1  ACACATACTCATACAGCTCTTGGACATCATTTGGTGATCAGACTCCAAAC  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTCATACAGCTCTTGGACATCATTTGGTGATCAGACTCCAAAC  549

seq1  TTCCAGCTCTATTCTTCTTCCTTGATTCTTAGCCTTTCTTTCTCACAAGT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTCTATTCTTCTTCCTTGATTCTTAGCCTTTCTTTCTCACAAGT  599

seq1  TCACGCTAGTGATTAGCTTTTATTGTTTTGTCCAGAATTAATAACTATGA  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCTAGTGATTAGCTTTTATTGTTTTGTCCAGAATTAATAACTATGA  649

seq1  CTTCTGCAGGGGGTTGATTCTGCACAAGTAGTGTGATATCACTGAATGTG  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAGGGGGTTGATTCTGCACAAGTAGTGTGATATCACTGAATGTG  699

seq1  GGCTTCCTTCCCCAGAGCCTGATCTTCACTCAGTCACTTTATAGCAAATG  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTTCCCCAGAGCCTGATCTTCACTCAGTCACTTTATAGCAAATG  749

seq1  AGATTCTATATCTACTCAAAACTATTCAACCCAAGCAGAGAACCGCAGCA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTATATCTACTCAAAACTATTCAACCCAAGCAGAGAACCGCAGCA  799

seq1  TACTCTTCTGACAAATGTTATAATTTCTTCTTAGGCTCTGACAGAACAGA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCTGACAAATGTTATAATTTCTTCTTAGGCTCTGACAGAACAGA  849

seq1  CTTCTTTCTTTCATCATATCTCTGATCTTAGCCTTTGTTAAATACTTTGG  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTTTCATCATATCTCTGATCTTAGCCTTTGTTAAATACTTTGG  899

seq1  GTTTATATAGTCCCACCCTATGACTAAGTACCTGTTCATGTTTCGGGAGA  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATAGTCCCACCCTATGACTAAGTACCTGTTCATGTTTCGGGAGA  949

seq1  GGCTTCCTAAATCATGTTAGTGAATTC  951
      |||||||||||||||||||||||||||
seq2  GGCTTCCTAAATCATGTTAGTGAATTC  976

seq1: chr15_9454388_9455486
seq2: B6Ng01-125F11.g_67_1164

seq1  GAATTCATGTTACATAACTTGCTGCAAGTCAAAAGGTTATTAAGCATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTACATAACTTGCTGCAAGTCAAAAGGTTATTAAGCATTGG  50

seq1  CATTGGGACTGGAAGGCAAGTAATTACGCTGCATAATGGAATTTTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGACTGGAAGGCAAGTAATTACGCTGCATAATGGAATTTTAAAAT  100

seq1  AGAGCACTGCCTTAAGGGAGTGTTCTAGGAGAAGAAGTGTTTATTTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGCCTTAAGGGAGTGTTCTAGGAGAAGAAGTGTTTATTTAGAT  150

seq1  TGCTGTGAATATGGAGGGATGTAGAATTTCCAAGATCAAACCACCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAATATGGAGGGATGTAGAATTTCCAAGATCAAACCACCATTTG  200

seq1  TATATGCCTCTGAGAACTAAAAAATGAATTGAGAGTTGCCTCACTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCTCTGAGAACTAAAAAATGAATTGAGAGTTGCCTCACTTTAAT  250

seq1  TTCTGGCAAAGGACAAAGTATTTCAGAAAGTTTTGAGAACCTAGGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCAAAGGACAAAGTATTTCAGAAAGTTTTGAGAACCTAGGAAATT  300

seq1  TTAGAGTTTGATACTTAGGACAGACACTCCTTCCTTTGCAAGTCCCGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTGATACTTAGGACAGACACTCCTTCCTTTGCAAGTCCCGGAA  350

seq1  GGAACACAGAGAGAGCGAGAGAGAGAGACAGGAGATGGATTCCTAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAGAGAGAGCGAGAGAGAGAGACAGGAGATGGATTCCTAAGCAC  400

seq1  CATGGAAACTATCTTCCTCACCATATTTGAAATTCCAGATTAGCTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAACTATCTTCCTCACCATATTTGAAATTCCAGATTAGCTGTGTT  450

seq1  GATGTCTGAGTCATTAAAAGCACAAGTCAATAAATGTTGACTTCCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGAGTCATTAAAAGCACAAGTCAATAAATGTTGACTTCCATCCA  500

seq1  CTTCCAACTGGCTGTGGCACCAGAAGGAGTGATCGTCCGCGTCTGCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACTGGCTGTGGCACCAGAAGGAGTGATCGTCCGCGTCTGCATCT  550

seq1  TCTAGGTCTCCTGAGAAGAACAAAACACAGCTGTTAAGGAGAAAAGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTCTCCTGAGAAGAACAAAACACAGCTGTTAAGGAGAAAAGGCAA  600

seq1  ATGACTGTATCAGCTGAAAATCTGATTCCCTTAATAAAATGTCACTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTATCAGCTGAAAATCTGATTCCCTTAATAAAATGTCACTTGAG  650

seq1  TGGCAGACATGAAGGAGAGAATATATATCGATATATTTATATACCTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACATGAAGGAGAGAATATATATCGATATATTTATATACCTATAT  700

seq1  ATAATTTATCTAAAGGAAGATATTCTAAGGACAGAAAAAAAGTTTCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATCTAAAGGAAGATATTCTAAGGACAGAAAAAAAGTTTCAATG  750

seq1  TGCTCTCTCTGTCTTTCTGTCTCTGCCTCTGCCTCTGTCTCTCTGTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTCTGTCTTTCTGTCTCTGCCTCTGCCTCTGTCTCTCTGTCTCT  800

seq1  GTCTCTCTCTCACACACACACAAATACACATACCTGAAACACATATGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTCACACACACACAAATACACATACCTGAAACACATATGCCA  850

seq1  AACCCGATGTGCACATACAGATTACAAAGTGTTCTAACAAAAAGAAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGATGTGCACATACAGATTACAAAGTGTTCTAACAAAAAGAAATCA  900

seq1  TCATAGTGGAGGAACAAGTTCCAGGTATATTTAAACAGTTCTACATTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGGAGGAACAAGTTCCAGGTATATTTAAACAGTTCTACATTGGA  950

seq1  CTAGTATGTTGGAAAATTATAAGGGGCATAGACAAACCCGTTTCCTTGTT  1000
      |||||||| ||||||  ||||||||||| |||  |||||||||||||| |
seq2  CTAGTATG-TGGAAA--TATAAGGGGCAAAGAACAACCCGTTTCCTTG-T  996

seq1  TATATTGGAGCTCCTTTGCTACACTTTAAAACTGTATTTAGAAAGTATTT  1050
      |||| |||||||||||||||||   |||||||||||||||||||||||||
seq2  TATAATGGAGCTCCTTTGCTACCACTTAAAACTGTATTTAGAAAGTATTT  1046

seq1  ATGTG--AGATTATATT-CTCCACTTCAGCCAAATTATCTTACATG-TTC  1096
      |||||   ||||||||| | |||||||  ||||| ||||||||||| |||
seq2  ATGTGGAGGATTATATTCCCCCACTTCGACCAAA-TATCTTACATGTTTC  1095

seq1  AGG  1099
      |||
seq2  AGG  1098