BAC Information

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BAC

Clone NameB6Ng01-125J08
Chromosome15 (Build37)
Map Location 50,697,436 - 50,799,485
singlet/doubletdoublet
Overlap geneTrps1, LOC100039644
Upstream geneLOC665160
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125J08.bB6Ng01-125J08.g
ACCDH928178DH928179
length750822
definitionDH928178|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J08, 5' end.DH928179|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,798,753 - 50,799,485)(50,697,436 - 50,698,260)
sequence
gaatggagtgtgcttttttgaagtcttgaagcacctcatgaaaattaatg
aactcctttgttcacaaattgtgaaatgatacaaaagtcatttgacctaa
gcttaataataaacttccaatgagggctcttggtatgttgaataaccttg
agataggatgtagcctcccaaggcctcagtccccttgcttgctatatgaa
aataaaataagatactatatatgaaggtacacaaatgtgatacagaatag
tatctagtaaaacaactgcacacattattttatgctcatccctggttttc
tgtaattctttacataaaaagtgatgagagctagtaagacaacttattcg
ctgcgggtggtttcacaaaaatgggagggaacttgttaaaagtataatcc
cacagtgagttaactgagacattgtgcatttgatatgcgacaggtgtcat
cacaatgtcaaaacttaacttcttgaagatactttatctataaactcatt
gaaggtaatgttctaaggttaactagttccctggaattcttcagctccac
agagcctgtgacaatctttgaccactttggttcatgttaagccatgcatg
aatttaaccttttcccattacttgctcatgctcaaagcactgcattaatc
agagaatgaggcttcagtattgagcttgctttcaagcctctgatgcattg
tgcttccttgatgaaaagcataggatgcaggaacaggaaatcactctgat

gaattccagttacggaagataagtattggaaaacaactgcaacgcagaga
tgaaaagctcctggtactgtctctaataaaaagtctgtgtgagtaggtct
tgtgtccgatgcgcagatattaatattatcaaacccatatacaccatcca
tatacacaagcactgtacagtaaataaaaataaaatagatggaggaattt
tcaggctcattcatttctgagaaaaaaaagtaaataaggaatcgagtcca
aacagcagtcagttttcagacccttggaaagtggtgttttgcaagttctc
aaatggtttcaagaaatttattcttaaaacttatatagtaaaaagagaag
gctagccattagatcagcaccttttccaagcccctacataagggacctgt
ccactttatggtccaaacacagtctttttttttttttttttttttctttt
tggtttttcgagacagcgtttctctgtgtatccctggctgtcctggacct
cactttgtagaccaggctggcctcaaagtcagaaatccgcctgcctctgc
ctccagagtgctgggattaaaggcatgcgccaccacgcccgcccccaaac
acagtcttaagagcagcacccgccagcaaacactcagaattagcactttt
ggctaggcacatatctgctaccaaattaaaacagttccacggggttgctg
gagcttcctccagaaagtgtcaggaatttcagtggtatttcttgtatcac
cactaagacgtatctgtacatctagtctggtttttgttgttgttgtgttg
ttgtgttgtttggggttttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50798753_50799485
seq2: B6Ng01-125J08.b_22_750 (reverse)

seq1  ATCAGAGTGAATTTCCTGTTCCCTGCCTCTTATGCTTTTCATCAAAGGAA  50
      ||||||||| |||||||||| ||||| || |||||||||||||||  | |
seq2  ATCAGAGTG-ATTTCCTGTT-CCTGCATCCTATGCTTTTCATCAA--GGA  46

seq1  AGCACAATGCATCAGAGGCTTTGAAAGCAAGCTCAATACTGAAGCCTCCT  100
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  AGCACAATGCATCAGAGGC-TTGAAAGCAAGCTCAATACTGAAGCCTCAT  95

seq1  TCTCTGATTAATGCAGTGCTTTGAGCATGAGCAAGTAATGGGAAAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATTAATGCAGTGCTTTGAGCATGAGCAAGTAATGGGAAAAGGTT  145

seq1  AAATTCATGCATGGCTTAACATGAACCAAAGTGGTCAAAGATTGTCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATGCATGGCTTAACATGAACCAAAGTGGTCAAAGATTGTCACAG  195

seq1  GCTCTGTGGAGCTGAAGAATTCCAGGGAACTAGTTAACCTTAGAACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGGAGCTGAAGAATTCCAGGGAACTAGTTAACCTTAGAACATTA  245

seq1  CCTTCAATGAGTTTATAGATAAAGTATCTTCAAGAAGTTAAGTTTTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATGAGTTTATAGATAAAGTATCTTCAAGAAGTTAAGTTTTGACA  295

seq1  TTGTGATGACACCTGTCGCATATCAAATGCACAATGTCTCAGTTAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGACACCTGTCGCATATCAAATGCACAATGTCTCAGTTAACTCA  345

seq1  CTGTGGGATTATACTTTTAACAAGTTCCCTCCCATTTTTGTGAAACCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGATTATACTTTTAACAAGTTCCCTCCCATTTTTGTGAAACCACC  395

seq1  CGCAGCGAATAAGTTGTCTTACTAGCTCTCATCACTTTTTATGTAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCGAATAAGTTGTCTTACTAGCTCTCATCACTTTTTATGTAAAGAA  445

seq1  TTACAGAAAACCAGGGATGAGCATAAAATAATGTGTGCAGTTGTTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAAACCAGGGATGAGCATAAAATAATGTGTGCAGTTGTTTTACT  495

seq1  AGATACTATTCTGTATCACATTTGTGTACCTTCATATATAGTATCTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTATTCTGTATCACATTTGTGTACCTTCATATATAGTATCTTATT  545

seq1  TTATTTTCATATAGCAAGCAAGGGGACTGAGGCCTTGGGAGGCTACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCATATAGCAAGCAAGGGGACTGAGGCCTTGGGAGGCTACATCC  595

seq1  TATCTCAAGGTTATTCAACATACCAAGAGCCCTCATTGGAAGTTTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAGGTTATTCAACATACCAAGAGCCCTCATTGGAAGTTTATTAT  645

seq1  TAAGCTTAGGTCAAATGACTTTTGTATCATTTCACAATTTGTGAACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTAGGTCAAATGACTTTTGTATCATTTCACAATTTGTGAACAAAG  695

seq1  GAGTTCATTAATTTTCATGAGGTGCTTC-AGACT  733
      |||||||||||||||||||||||||||| |||||
seq2  GAGTTCATTAATTTTCATGAGGTGCTTCAAGACT  729

seq1: chr15_50697436_50698260
seq2: B6Ng01-125J08.g_65_885

seq1  GAATTCCAGTTACGGAAGATAAGTATTGGAAAACAACTGCAACGCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTACGGAAGATAAGTATTGGAAAACAACTGCAACGCAGAGA  50

seq1  TGAAAAGCTCCTGGTACTGTCTCTAATAAAAAGTCTGTGTGAGTAGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCTCCTGGTACTGTCTCTAATAAAAAGTCTGTGTGAGTAGGTCT  100

seq1  TGTGTCCGATGCGCAGATATTAATATTATCAAACCCATATACACCATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCGATGCGCAGATATTAATATTATCAAACCCATATACACCATCCA  150

seq1  TATACACAAGCACTGTACAGTAAATAAAAATAAAATAGATGGAGGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAAGCACTGTACAGTAAATAAAAATAAAATAGATGGAGGAATTT  200

seq1  TCAGGCTCATTCATTTCTGAGAAAAAAAAGTAAATAAGGAATCGAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCATTCATTTCTGAGAAAAAAAAGTAAATAAGGAATCGAGTCCA  250

seq1  AACAGCAGTCAGTTTTCAGACCCTTGGAAAGTGGTGTTTTGCAAGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGTCAGTTTTCAGACCCTTGGAAAGTGGTGTTTTGCAAGTTCTC  300

seq1  AAATGGTTTCAAGAAATTTATTCTTAAAACTTATATAGTAAAAAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTTCAAGAAATTTATTCTTAAAACTTATATAGTAAAAAGAGAAG  350

seq1  GCTAGCCATTAGATCAGCACCTTTTCCAAGCCCCTACATAAGGGACCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCATTAGATCAGCACCTTTTCCAAGCCCCTACATAAGGGACCTGT  400

seq1  CCACTTTATGGTCCAAACACAGTCTTTTTTTTTTTTTTTTTTTTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTATGGTCCAAACACAGTCTTTTTTTTTTTTTTTTTTTTTCTTTT  450

seq1  TGGTTTTTCGAGACAGCGTTTCTCTGTGTATCCCTGGCTGTCCTGGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTCGAGACAGCGTTTCTCTGTGTATCCCTGGCTGTCCTGGACCT  500

seq1  CACTTTGTAGACCAGGCTGGCCTCAAAGTCAGAAATCCGCCTGCCTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACCAGGCTGGCCTCAAAGTCAGAAATCCGCCTGCCTCTGC  550

seq1  CTCCAGAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGCCCCCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGCCCCCAAAC  600

seq1  ACAGTCTTAAGAGCAGCACCCGCCAGCAAACACTCAGAATTAGCACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTAAGAGCAGCACCCGCCAGCAAACACTCAGAATTAGCACTTTT  650

seq1  GGCTAGGCACATATCTGCTACCAAATTAAAACAGTTCCACGGGGTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGCACATATCTGCTACCAAATTAAAACAGTTCCACGGGGTTGCTG  700

seq1  GAGCTTCCTCCAGAAAGTGTCAGGAAATTTCAGTGGTATTTCTTGTATCA  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGCTTCCTCCAGAAAGTGTCAGG-AATTTCAGTGGTATTTCTTGTATCA  749

seq1  CCACTAAGACGTATCTGTACATCTAGTCTGGTTTTTTGTTGTTGTTGTTG  800
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CCACTAAGACGTATCTGTACATCTAGTCTGG-TTTTTGTTGTTGTTG-TG  797

seq1  TTGTTGTTGTTGTTTTGGGTTTTTT  825
      |||||| |||||||| |||||||||
seq2  TTGTTG-TGTTGTTTGGGGTTTTTT  821