BAC Information

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BAC

Clone NameB6Ng01-127B06
Chromosome15 (Build37)
Map Location 44,347,668 - 44,563,889
singlet/doubletdoublet
Overlap genePkhd1l1, Ebag9, 5730410E15Rik
Upstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2
Downstream geneA930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127B06.bB6Ng01-127B06.g
ACCDH929289DH929290
length997867
definitionDH929289|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B06, 5' end.DH929290|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,347,668 - 44,348,666)(44,563,022 - 44,563,889)
sequence
gaattccagccaaatgttcaggtgactgtgggtttacatgggatgccatg
attactcccctgatcttgacaacaacaccttccgaaggtaagctttggtt
ttaaccttaaatacaaggtgctggatagataaaaaaatatatttaaaaat
aggctctgtggtggtactacccttcccatccctgacagtgacttttagta
tggtttaaaatctttttcttgataaagttctgctgatttcttttgaagaa
ctagcctttagtgtttcttgtaattttttattccattgattttaaatgtc
attattttgatttgctgttgttacccatactcatgtttgtacctcaagtt
tattcattttcactatttggcagtcaaatatctcacagtttatttataaa
ttctcatgttgaaaacaaaacaaaaaaagaaaaatataacctgtgataat
gaactttaaatatttattattgtcactaactatggcaagaaaacctctca
atatagtgagaactatttatcagctgaaactatggaaaagcactcattac
ttacttggaaaaaaatatatgaagccaaaatattccattgatatctctat
tctctacttttacaaattacaatcagtctctataatttctctgtgacttt
gagacattgcttaatattcatctggtgagaattctccaacagaggtagca
actaggcaggcaataggatagctatagtgtaacaaaacaaaagaattgag
tattcacttcgagaaaacaaaacaattaatgccaagaactcatcacagcc
tagggtgtgttttattggggaaaatgtgattgtgttttttgtgtaaactc
ctaaaattgtaaataaacataaggaataaagtgtaaagggtgagttttta
ccatagtgatgaattcagaaatcactaccttatatgcggtcttagtaatt
gaaagtaactgtatctggtttgtgcccttgcatttgctaattttgtg
gaattccagatatatttaataaaaatgaaactatagtaatctaggaaata
atgtggctctttatctagttgatctttaaatagaaaatatttgaagcatg
tataaagactattgaaagatgctaatcgtggtggcgcacgcctttaatcc
cagcacttgggaggcagaggcaggtggatctctgtgagtttgaggccagc
ctggtctacaaaccaagtctgagaaagccagggctctgttacacagggaa
acatgttctcaaaaattattgaaagaaaataaacatttatagagacttgg
caaaatatgaaatatttgaatgttcaaaagattatgagggtaaaagttaa
aatagtgagttaatgtaatatatattaaatgctgtgtgtattatatatac
atacatatattttaagaaactctgaatgcacaaatagaaaagacatgaac
aagtcatgttctatgtacagaaggccaacaatccaatatatgaaatacat
gaagctttactgacaaaaacatgtaaattacaacatcaaagcatcatgtg
taattattaatgtgagaaattacaagcaaaagaatattgtcaggaattca
gcaagattattagaagaacagaaatataaattatctccattgtttatgga
gacttatagtaattctattagaacatacatctctacatgctaatcaggac
ttggctgaaaatattttcttgtaagatggtaaagccattttaacaatagt
gacaaaatggaaccttaaatagcctataaatgaaacgggcttaaaatccc
atatctggcctatttggatgagcctaagataataaacttattaaaatggt
ttaaataaaaatataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44347668_44348666
seq2: B6Ng01-127B06.b_47_1043

seq1  GAATTCCAGCCAAATGTTCAGGTGACTGTGGGTTTACATGGGATGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCAAATGTTCAGGTGACTGTGGGTTTACATGGGATGCCATG  50

seq1  ATTACTCCCCTGATCTTGACAACAACACCTTCCGAAGGTAAGCTTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCCCTGATCTTGACAACAACACCTTCCGAAGGTAAGCTTTGGTT  100

seq1  TTAACCTTAAATACAAGGTGCTGGATAGATAAAAAAATATATTTAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTAAATACAAGGTGCTGGATAGATAAAAAAATATATTTAAAAAT  150

seq1  AGGCTCTGTGGTGGTACTACCCTTCCCATCCCTGACAGTGACTTTTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTGGTGGTACTACCCTTCCCATCCCTGACAGTGACTTTTAGTA  200

seq1  TGGTTTAAAATCTTTTTCTTGATAAAGTTCTGCTGATTTCTTTTGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAAAATCTTTTTCTTGATAAAGTTCTGCTGATTTCTTTTGAAGAA  250

seq1  CTAGCCTTTAGTGTTTCTTGTAATTTTTTATTCCATTGATTTTAAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTTAGTGTTTCTTGTAATTTTTTATTCCATTGATTTTAAATGTC  300

seq1  ATTATTTTGATTTGCTGTTGTTACCCATACTCATGTTTGTACCTCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTGATTTGCTGTTGTTACCCATACTCATGTTTGTACCTCAAGTT  350

seq1  TATTCATTTTCACTATTTGGCAGTCAAATATCTCACAGTTTATTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTTCACTATTTGGCAGTCAAATATCTCACAGTTTATTTATAAA  400

seq1  TTCTCATGTTGAAAACAAAACAAAAAAAGAAAAATATAACCTGTGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGTTGAAAACAAAACAAAAAAAGAAAAATATAACCTGTGATAAT  450

seq1  GAACTTTAAATATTTATTATTGTCACTAACTATGGCAAGAAAACCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTAAATATTTATTATTGTCACTAACTATGGCAAGAAAACCTCTCA  500

seq1  ATATAGTGAGAACTATTTATCAGCTGAAACTATGGAAAAGCACTCATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGAGAACTATTTATCAGCTGAAACTATGGAAAAGCACTCATTAC  550

seq1  TTACTTGGAAAAAAATATATGAAGCCAAAATATTCCATTGATATCTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGAAAAAAATATATGAAGCCAAAATATTCCATTGATATCTCTAT  600

seq1  TCTCTACTTTTACAAATTACAATCAGTCTCTATAATTTCTCTGTGACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTTTACAAATTACAATCAGTCTCTATAATTTCTCTGTGACTTT  650

seq1  GAGACATTGCTTAATATTCATCTGGTGAGAATTCTCCAACAGAGGTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTGCTTAATATTCATCTGGTGAGAATTCTCCAACAGAGGTAGCA  700

seq1  ACTAGGCAGGCAATAGGATAGCTATAGTGTAACAAAACAAAAGAATTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCAGGCAATAGGATAGCTATAGTGTAACAAAACAAAAGAATTGAG  750

seq1  TATTCACTTCGAGAAAACAAAACAATTAATGCCAAGAACTCATCACAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTTCGAGAAAACAAAACAATTAATGCCAAGAACTCATCACAGCC  800

seq1  TAGGGTGTGTTTTATTGGGGAAAATGTGATTGTGTTTTTTGTGTAAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTGTTTTATTGGGGAAAATGTGATTGTGTTTTTTGTGTAAACTC  850

seq1  CTAAAATTGTAAATAAACATAAGGAATAAGGTGTAAAGGGTGAGTTTTTA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CTAAAATTGTAAATAAACATAAGGAATAAAGTGTAAAGGGTGAGTTTTT-  899

seq1  ACCATAGTGATGAATTCAGAAATCACTACCTTATATGCGGTCTTAGTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTGATGAATTCAGAAATCACTACCTTATATGCGGTCTTAGTAAT  949

seq1  TGAAAGTAAACTGTATCTGGTTTGTGCCCTTGCATTTGCTAATTTTGTG  999
      ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGT-AACTGTATCTGGTTTGTGCCCTTGCATTTGCTAATTTTGTG  997

seq1: chr15_44563022_44563889
seq2: B6Ng01-127B06.g_67_933 (reverse)

seq1  TTTATTATTTTTATTTTATAACTATTTTATTAAGTTTATTATCTTTAAGT  50
      |||| |||||||||||   ||| |||||| |||||||||||||||  || 
seq2  TTTA-TATTTTTATTT--AAACCATTTTAATAAGTTTATTATCTT--AGG  45

seq1  CTATTCAAATTAGGCAAGATATGGAATTTTAAAGACCGTTTTCATTTTAT  100
      ||  || || ||||| |||||||| ||||| ||| ||| ||||| |||||
seq2  CTCATCCAAATAGGCCAGATATGGGATTTT-AAGCCCG-TTTCA-TTTAT  92

seq1  AGCTTATTTTAAGGTTCCATTTTTGTCACTATTGTTAAAATTGCTTTTAC  150
      ||  || |||||||||||| ||||||||||||||||||||| |||||  |
seq2  AGGCTA-TTTAAGGTTCCA-TTTTGTCACTATTGTTAAAATGGCTTTACC  140

seq1  ATCTTACA--GATATATTTTCAGCCAAGT-CTGATTAGCATGTAGA-ATG  196
      ||||||||   | |||||||||||||||| |||||||||||||||| |||
seq2  ATCTTACAAGAAAATATTTTCAGCCAAGTCCTGATTAGCATGTAGAGATG  190

seq1  TATG-TCTAATAGAATTACTAT-AGTCTCCATAAAC-ATTGAGATAATTT  243
      |||| ||||||||||||||||| ||||||||||||| || ||||||||||
seq2  TATGTTCTAATAGAATTACTATAAGTCTCCATAAACAATGGAGATAATTT  240

seq1  ATATTTCTGTTC-TCTAAT-ATCTTGCTGAATTCCTGACAATATTCTTTT  291
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  ATATTTCTGTTCTTCTAATAATCTTGCTGAATTCCTGACAATATTCTTTT  290

seq1  GCTTGTAATTTCTCACATTAATAATTACACATGATGCTTTGATGTTGTAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAATTTCTCACATTAATAATTACACATGATGCTTTGATGTTGTAA  340

seq1  TTTACATGTTTTTGTCAGTAAAGCTTCATGTATTTCATATATTGGATTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTTTTTGTCAGTAAAGCTTCATGTATTTCATATATTGGATTGT  390

seq1  TGGCCTTCTGTACATAGAACATGACTTGTTCATGTCTTTTCTATTTGTGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCTGTACATAGAACATGACTTGTTCATGTCTTTTCTATTTGTGC  440

seq1  ATTCAGAGTTTCTTAAAATATATGTATGTATATATAATACACACAGCATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGTTTCTTAAAATATATGTATGTATATATAATACACACAGCATT  490

seq1  TAATATATATTACATTAACTCACTATTTTAACTTTTACCCTCATAATCTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATATTACATTAACTCACTATTTTAACTTTTACCCTCATAATCTT  540

seq1  TTGAACATTCAAATATTTCATATTTTGCCAAGTCTCTATAAATGTTTATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATTCAAATATTTCATATTTTGCCAAGTCTCTATAAATGTTTATT  590

seq1  TTCTTTCAATAATTTTTGAGAACATGTTTCCCTGTGTAACAGAGCCCTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAATAATTTTTGAGAACATGTTTCCCTGTGTAACAGAGCCCTGG  640

seq1  CTTTCTCAGACTTGGTTTGTAGACCAGGCTGGCCTCAAACTCACAGAGAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGACTTGGTTTGTAGACCAGGCTGGCCTCAAACTCACAGAGAT  690

seq1  CCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCAC  740

seq1  GATTAGCATCTTTCAATAGTCTTTATACATGCTTCAAATATTTTCTATTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCATCTTTCAATAGTCTTTATACATGCTTCAAATATTTTCTATTT  790

seq1  AAAGATCAACTAGATAAAGAGCCACATTATTTCCTAGATTACTATAGTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAACTAGATAAAGAGCCACATTATTTCCTAGATTACTATAGTTT  840

seq1  CATTTTTATTAAATATATCTGGAATTC  868
      |||||||||||||||||||||||||||
seq2  CATTTTTATTAAATATATCTGGAATTC  867