BAC Information

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BAC

Clone NameB6Ng01-132B05
Chromosome15 (Build37)
Map Location 78,407,388 - 78,408,383
singlet/doubletsinglet
Overlap genenone
Upstream gene9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2
Downstream genePscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132B05.bB6Ng01-132B05.g
ACCDH932971DH932972
length1,241986
definitionDH932971|Mus musculus domesticus DNA, BAC clone: B6Ng01-132B05, 5' end.DH932972|Mus musculus domesticus DNA, BAC clone: B6Ng01-132B05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgaccaacgaaggcctggagaagagcccagaggagatcaaacg
cctgtttaaggagaaaaaggtggacctgtctaagcccttggtagccacgt
gtggctccggtgtcacagcctgccacgtggtcctgggggccttcctctgt
ggcaagtcagacgtgcctgtctatgatggctcctgggtagagtggtacat
gcgtgcccagccagagcatatcatctctgagggccgagggaagacccagt
gaagccaggcaggacacagtgcagcttgggtgacatctgaccatcacagt
accagccactggtcactctgaccctgctttgccaagagtcctttctcaga
caactgaaggagtgtttggggtgatatcccagagacctggagttccagtg
actcatagatactcagctgaggtagccaagaaggtggcaggcagtaagag
ggtacccaggggagggagggaggctcttatgtcatctgactaaaggtttc
atagaccaaaaataaccatccaacctgttggaatactgaaacaattgctg
cctgctttccacacactacataaaatatgtggatatcctaaattctacaa
aaaaagatttgtaagcaaatcaagcaatactgggactccctcttctccag
aaggtatttgcattttcactaatgttaaatggtatttcttatttattgaa
aatagccagagattttacccttcttacaagtaggtttagaatttcacact
tgcaaagtgtcacagaaatgctgcttatgaccagatgcttcaacttcctt
attctcatgaagtttgccacattacctctttgatgaagggcacaaccatt
ctacttctgtgcaaaactgcccaagctcctcccctatcttcttttaggaa
gatttagacattcacaacagagagtgctccaacctgttgttgagcacagt
gtgtttggaggaaatccccagatctcattttccagtgtatgtcctaccta
taacttcaaatttccgtggtctgggaagcactgttctgactaagaagatt
tctgaacactctggacctgaatcctaacgagagaatatcaaggatatggt
aattcgatttactatctttgttttgtacctttaacaagagcactctgcct
catgcaaggaaatgttggaagacaatatttaagggagagactaccagaaa
tatacacttatcctctcttgaaggatctgctaagatgtgtc
gaattcattcatttgtgcaccattcatctgacccatcatgtgcatatatc
ttcataccatgatccaccacctatccatttgtgcatgcgtgcatccatct
ctctctctctctctctctctctctctctctctctttctccctctctcttt
ctctctctctccatgcccatccacacaccctcccatctacctgaagtgag
ctaagggagctagctgcagaggggacaaggatgtcagatcctagctctgc
cacatgactaggtttctggtgaggaaagtccctgatggagggaatggcct
gcgttcttctggggatttcctgggaaaaagtcccctctctgagccctggg
tgtacctggtacgatctcccagaagggatctcttgctcagctgtggagag
gaaggagtgagcacgacagagtggcttagcgaggcccatagagctgcaaa
gaacagagaggggcagctcagtggctctggggaaggtcctgccaggctgg
tgcctgcctactgcttttcaccaattctttgggttaatctatcaaggtag
agggcactttgacccatatgctgcccaccctgaactctatcccacaccca
ctagggttagggtagaggcagctttccatttaaaaaaaaaaggtcattta
aaaaaattattccatttaaaagtgtttttggagctggagaggtggctcag
tggttaagagcattggctgctctttccagaggacccgggttcaattccta
gcacgtactaacagctcatagctgttcaggtccagaagatctgagactct
cacacagacttacatgtaggcaaaaacatcttatgtacataaaaattaaa
aaaaaaacaaaatttactgcttgtctgcgtgtatgtgcctgtgcatgcct
gtgcaatttagaatccaagacacttttcttggggtcagggggaagtcacc
ttttttcttctgagtcctggaatagattcaactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78407388_78408383
seq2: B6Ng01-132B05.g_68_1053 (reverse)

seq1  GTGAGTTGAATGCAATCCCCAGAACTCAGAAGAAAAAAGGTGACCTCCCC  50
      |||||||||||  | |  |||| ||||||||||||||||||||| |||||
seq2  GTGAGTTGAATCTATT--CCAGGACTCAGAAGAAAAAAGGTGACTTCCCC  48

seq1  CTGACCCCCAAAGAAAAGTTGTCTTTTGACTTCTAAACTTGCACATGGCA  100
      ||||||||  |||||||| ||||  |||  ||||||| ||||||| ||||
seq2  CTGACCCC--AAGAAAAG-TGTC--TTGGATTCTAAA-TTGCACA-GGCA  91

seq1  TGCACAGGCACATACACGCATAACAAGCATGTAATTTTGTTTTTTTTTTT  150
      ||||||||||||||||||||  |||||||   ||||||||||||||||| 
seq2  TGCACAGGCACATACACGCA-GACAAGCAGTAAATTTTGTTTTTTTTTT-  139

seq1  AATTTTTTATGTACAT-AGATGTTTTTGCCTACATGTAAGTCTGTGTGAG  199
       | ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  -AATTTTTATGTACATAAGATGTTTTTGCCTACATGTAAGTCTGTGTGAG  188

seq1  AGTCTCAGATCTTCTGGACCTGAACAGCTATGAGCTGCTAGTACGTGCTA  249
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTCTCAGATCTTCTGGACCTGAACAGCTATGAGCTGTTAGTACGTGCTA  238

seq1  GGAATTGAACCCGGGTCCTCTGG-AAGAGCAGCCAATGCTCTTAACCACT  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGAATTGAACCCGGGTCCTCTGGAAAGAGCAGCCAATGCTCTTAACCACT  288

seq1  GAGCCACCTCTCCAGCTCCAAAAACACTTTTAAATGGAATAATTTTTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCTCTCCAGCTCCAAAAACACTTTTAAATGGAATAATTTTTTTA  338

seq1  AATGACCTTTTTTTTTTAAATGGAAAGCTGCCTCTACCCTAACCCTAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTTTTTTTTTTAAATGGAAAGCTGCCTCTACCCTAACCCTAGTG  388

seq1  GGTGTGGGATAGAGTTCAGGGTGGGCAGCATATGGGTCAAAGTGCCCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGATAGAGTTCAGGGTGGGCAGCATATGGGTCAAAGTGCCCTCT  438

seq1  ACCTTGATAGATTAACCCAAAGAATTGGTGAAAAGCAGTAGGCAGGCACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATAGATTAACCCAAAGAATTGGTGAAAAGCAGTAGGCAGGCACC  488

seq1  AGCCTGGCAGGACCTTCCCCAGAGCCACTGAGCTGCCCCTCTCTGTTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCAGGACCTTCCCCAGAGCCACTGAGCTGCCCCTCTCTGTTCTT  538

seq1  TGCAGCTCTATGGGCCTCGCTAAGCCACTCTGTCGTGCTCACTCCTTCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCTATGGGCCTCGCTAAGCCACTCTGTCGTGCTCACTCCTTCCT  588

seq1  CTCCACAGCTGAGCAAGAGATGCCACCTGGGAGGCTGTACCAGGTACAAC  648
      ||||||||||||||||||||| ||  |||||||   |||||||||||| |
seq2  CTCCACAGCTGAGCAAGAGATCCCTTCTGGGAGATCGTACCAGGTACACC  638

seq1  CAGGGCTCAGAGAGGGGACTTTCTCCCAGGAAATCCCCAGAAGAACGCAG  698
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGGGCTCAGAGAGGGGACTTTTTCCCAGGAAATCCCCAGAAGAACGCAG  688

seq1  GCCATTCCCTCCATCAGGGACTTTCCTCACCAGAAACCTAGTCATGTGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCCTCCATCAGGGACTTTCCTCACCAGAAACCTAGTCATGTGGC  738

seq1  AGAGCTAGGATCTGACATCCTTGTCCCCTCTGCAGCTAGCTCCCCTAGCT  798
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAGCTAGGATCTGACATCCTTGTCCCCTCTGCAGCTAGCTCCCTTAGCT  788

seq1  CACTTCAGGTAGATGGGAGGGTGTGTGGATGGGCATGGAGAGAGAGAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGGTAGATGGGAGGGTGTGTGGATGGGCATGGAGAGAGAGAGAA  838

seq1  AGAGAGAGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  888

seq1  ATGGATGCATGCATGCACAAATGGATAGGTGGTGGATCATGGTATGAAGA  948
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGCACGCATGCACAAATGGATAGGTGGTGGATCATGGTATGAAGA  938

seq1  TATATGCACATGATGGGTCAGATGAATGGTGCACAAATGAATGAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCACATGATGGGTCAGATGAATGGTGCACAAATGAATGAATTC  986