BAC Information

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BAC

Clone NameB6Ng01-132P12
Chromosome15 (Build37)
Map Location 43,098,793 - 43,243,288
singlet/doubletdoublet
Overlap geneEif3s6
Upstream geneLOC100039268, LOC100039197, Angpt1, Rspo2, LOC675960
Downstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132P12.bB6Ng01-132P12.g
ACCDH933641DH933642
length1,1321,144
definitionDH933641|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P12, 5' end.DH933642|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,098,793 - 43,099,958)(43,242,126 - 43,243,288)
sequence
gaattcactttcaccaaagcatttatacaacagaatgtatctgtaatgtg
tattatatattaaaatctaactgtacagtatgattagaaagccagccaag
tgttcgcctctgccactgctaccacaggcggcaaagccacctgtgtttgc
ctccgcatggcttcaacatgacaaaaagtatattacccaacacgtgctaa
gatctcagtaaatgtgaggttactgaagtgatacagcactttgacataat
tattattatcatttgcagtaattttcacaaatgttttggaaagcatttag
caagctctcagagcagtcaaataatagaaataatatctataaattaaatt
ttgaaaaatgagcaagaagctacttgttccaatttttatcatgaagtata
cctacaatatgatccacacttaaatatgcacaactacctacatccacagt
gctgggagtggggattacgtgttagagtaataccaggtactgctaaagac
tgtctcaaaggaataatgcacagagtggtcgagggaatccatcattactt
tgcatatacatgcaccaatcctaagtgcaaacacctaccccacctgacac
acaaacttcattaagtctaatatgctatcaaatttaatacacttactttg
tctacctagaactaaaaaacaactgactcaatatatatttcaattagaga
cagtgaagtataagccatgcttgggactcaatataaacgagatacccttt
aaactgacagccaataggcatatcagagccaaaactgtggccaagatgct
aaagtcaccattacccaaggtgtctgtgcatgatggaaagtgctgttaaa
ggttctaatatgccattgacagtcaatacatcttcaattctaactgggag
aaaaaaaactttaaaaaatatagtaagaaatggtaattttaaatcacttt
tacttcatagttccttatgtcacattttagagataaccagggttctatag
tgagaagatctttataaaaattcagtacacttttaaacaaagctatcacg
tttctacattctcttattcatttataacatactttggagcaagtgcaaga
agtctcaatcgacgactcctcaacaattcgaa
gaattctttctaaaaagttaagtattgttatttcatttacttccaattta
tgagattaactgtgattgcaattaggaaatttaaaataatttttgtggca
tatatacactgtattatcaaggaacatctgaattttaaaagtatttaaaa
gataacattactaaatttaaaatattattcaactctatagtaggaaaagt
agtacaatacaaatacaattaaaaattagtgtcctttgttagaaagtatt
aagaatatttgggaatttagtataagctattgagaaaacatttattagtc
aataaattgtattttgatgactagctagtcatttggaaactaattaagct
agattcttacctaactcattatcctgaaatagattccagatggataaaat
attaaacttaagccataaaactagtcttcgataactgtctttaataaact
tacaaaagcaaaggctttgaaaggcaacgcatagctggaattccaaggct
tatcattctaagtatgtacaaacaacgcttactctttacatccaataatt
caaggtacacaaagtgtacattttatttttaattcctggaaactcagttc
ttgacctcagaagaaagcactcattacataaacctgtgagatgaccgcca
ttatcacttaattttacaagtgcaaaattagagagaactataacagtttc
tataaacatagaagcacagattgatatttggtactatgaattgcacacag
gaaacgatagaaagaacattggtgacttctgagaagaataaagtagtgtg
ctttctttaatataatttatatctaagtataacaatataatttatatttc
agtataacaatataaattgcccctgaagttagcaatttcactgcagcaat
taagcaacatataaattcagaagtgcccaaatataatattcaaccagaaa
ttaaaaatatccaattggtagaattgtagccacatgggctattaaaacac
atctatgctactgaaacagttactacactgacttccagtgtctcttttat
agctcagcatttgcctctctgtgtggggtttggtgtgaccagaaatagat
tcttaccttccactactgggaatcataggaccttcttacattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43098793_43099958
seq2: B6Ng01-132P12.b_50_1181

seq1  GAATTCACTTTCACCAAAGCATTTATACAACAGAATGTATCTGTAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCACCAAAGCATTTATACAACAGAATGTATCTGTAATGTG  50

seq1  TATTATATATTAAAATCTAACTGTACAGTATGATTAGAAAGCCAGCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATATTAAAATCTAACTGTACAGTATGATTAGAAAGCCAGCCAAG  100

seq1  TGTTCGCCTCTGCCACTGCTACCACAGGCGGCAAAGCCACCTGTGTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGCCTCTGCCACTGCTACCACAGGCGGCAAAGCCACCTGTGTTTGC  150

seq1  CTCCGCATGGCTTCAACATGACAAAAAGTATATTACCCAACACGTGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCATGGCTTCAACATGACAAAAAGTATATTACCCAACACGTGCTAA  200

seq1  GATCTCAGTAAATGTGAGGTTACTGAAGTGATACAGCACTTTGACATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGTAAATGTGAGGTTACTGAAGTGATACAGCACTTTGACATAAT  250

seq1  TATTATTATCATTTGCAGTAATTTTCACAAATGTTTTGGAAAGCATTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATCATTTGCAGTAATTTTCACAAATGTTTTGGAAAGCATTTAG  300

seq1  CAAGCTCTCAGAGCAGTCAAATAATAGAAATAATATCTATAAATTAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTCAGAGCAGTCAAATAATAGAAATAATATCTATAAATTAAATT  350

seq1  TTGAAAAATGAGCAAGAAGCTACTTGTTCCAATTTTTATCATGAAGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATGAGCAAGAAGCTACTTGTTCCAATTTTTATCATGAAGTATA  400

seq1  CCTACAATATGATCCACACTTAAATATGCACAACTACCTACATCCACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAATATGATCCACACTTAAATATGCACAACTACCTACATCCACAGT  450

seq1  GCTGGGAGTGGGGATTACGTGTTAGAGTAATACCAGGTACTGCTAAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGTGGGGATTACGTGTTAGAGTAATACCAGGTACTGCTAAAGAC  500

seq1  TGTCTCAAAGGAATAATGCACAGAGTGGTCGAGGGAATCCATCATTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAGGAATAATGCACAGAGTGGTCGAGGGAATCCATCATTACTT  550

seq1  TGCATATACATGCACCAATCCTAAGTGCAAACACCTACCCCACCTGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATACATGCACCAATCCTAAGTGCAAACACCTACCCCACCTGACAC  600

seq1  ACAAACTTCATTAAGTCTAATATGCTATCAAATTTAATACACTTACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTCATTAAGTCTAATATGCTATCAAATTTAATACACTTACTTTG  650

seq1  TCTACCTAGAACTAAAAAACAACTGACTCAATATATATTTCAATTAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTAGAACTAAAAAACAACTGACTCAATATATATTTCAATTAGAGA  700

seq1  CAGTGAAGTATAAGCCATGCTTGGGACTCAATATAAACGAGATACCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGTATAAGCCATGCTTGGGACTCAATATAAACGAGATACCCTTT  750

seq1  AAACTGACAGCCAATAGGCATATCAGAGCCAAAACTGTGGCCAAGATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACAGCCAATAGGCATATCAGAGCCAAAACTGTGGCCAAGATGCT  800

seq1  AAAGTCACCATTACCCAAGGTGTCTGTGCATGATGGAAAGTGCTGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACCATTACCCAAGGTGTCTGTGCATGATGGAAAGTGCTGTTAAA  850

seq1  GGTTCTAATATGCCATTGACAGTCAATACATCTTCAATTCTAACTGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAATATGCCATTGACAGTCAATACATCTTCAATTCTAACTGGGAG  900

seq1  AAAAAAAAACTTTAAAAAAATATAGTAAGAAATGGTAATTTTAAAATCAC  950
       |||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  -AAAAAAAACTTT-AAAAAATATAGTAAGAAATGGTAATTTT-AAATCAC  947

seq1  TTTTACTTCAATAGTTCCTTAATGGTCACATTTTAGAGATAAACCAAGGG  1000
      ||||||||| |||||||||||   ||||||||||||||||||  | ||||
seq2  TTTTACTTC-ATAGTTCCTTA--TGTCACATTTTAGAGATAA--CCAGGG  992

seq1  TTCTATAGTGAGGACAGATCTTTAATAAAAATTCAGTACAACTTTTAAAA  1050
      ||||||||||||   |||||||| ||||||||||||||| ||||||||| 
seq2  TTCTATAGTGAG--AAGATCTTT-ATAAAAATTCAGTAC-ACTTTTAAA-  1037

seq1  CAAAAGCTATTCAAACGTTTCTACCAATTCTCCTTATTTCATTTTAATTA  1100
        ||||||||    ||||||||||  ||||| |||| |||||||    ||
seq2  -CAAAGCTAT---CACGTTTCTAC--ATTCT-CTTA-TTCATTT---ATA  1076

seq1  ACATACTTTTGGAGCAAAGTGCAAAGAAGTCTCACATCCAAACGGAC-AT  1149
      |||||| |||||||| |||||| ||||||||||| |||      ||| | 
seq2  ACATAC-TTTGGAGC-AAGTGC-AAGAAGTCTCA-ATC------GACGAC  1116

seq1  TCCTCAACATATTCGAA  1166
      ||||||||| |||||||
seq2  TCCTCAACA-ATTCGAA  1132

seq1: chr15_43242126_43243288
seq2: B6Ng01-132P12.g_67_1210 (reverse)

seq1  TCAATGGTAAAGAGAGGTCCTAATGATCACCAGTAGTGGGAAAGTTATGA  50
      ||||||   |||| ||||||| |||||  ||||||||||  ||| || ||
seq2  TCAATG--TAAGA-AGGTCCT-ATGATTCCCAGTAGTGG--AAGGTAAGA  44

seq1  ATCCTTTATTTTCTGGGTCACACAGAAACCCCACACAGAGAGCCAAATGG  100
      |||   || ||||| ||||||||  ||||||||||||||||| ||||| |
seq2  ATC---TA-TTTCT-GGTCACAC-CAAACCCCACACAGAGAGGCAAAT-G  87

seq1  CTGAGCTATAAAAGGAGACACCTGGGAAGTTCAGTGTAGTAACTGTTTCA  150
      ||||||||||||| |||||||   ||||| ||||||||||||||||||||
seq2  CTGAGCTATAAAA-GAGACAC--TGGAAG-TCAGTGTAGTAACTGTTTCA  133

seq1  GTAGGCATAGATGTGTTTTAATAGCCCATGTGGCTACAATTCTACCAATT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTA-GCATAGATGTGTTTTAATAGCCCATGTGGCTACAATTCTACCAATT  182

seq1  GGATATTTTTAATTTCTGGTTGAATATGTATATTTGGGCACTTCTGAATT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGATATTTTTAATTTCTGGTTGAATAT-TATATTTGGGCACTTCTGAATT  231

seq1  TATATGTTGCTTAATTGCTGCAGTGAAATTGCTAACTTCAGGGGCAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTGCTTAATTGCTGCAGTGAAATTGCTAACTTCAGGGGCAATTT  281

seq1  ATATTGTTATACTGAAATATAAATTATATTGTTATACTTAGATATAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTATACTGAAATATAAATTATATTGTTATACTTAGATATAAATT  331

seq1  ATATTAAAGAAAGCACACTACTTTATTCTTCTCAGAAGTCACCAATGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGAAAGCACACTACTTTATTCTTCTCAGAAGTCACCAATGTTC  381

seq1  TTTCTATCGTTTCCTGTGTGCAATTCATAGTACCAAATATCAATCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCGTTTCCTGTGTGCAATTCATAGTACCAAATATCAATCTGTGC  431

seq1  TTCTATGTTTATAGAAACTGTTATAGTTCTCTCTAATTTTGCACTTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTTTATAGAAACTGTTATAGTTCTCTCTAATTTTGCACTTGTAA  481

seq1  AATTAAGTGATAATGGCGGTCATCTCACAGGTTTATGTAATGAGTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTGATAATGGCGGTCATCTCACAGGTTTATGTAATGAGTGCTTT  531

seq1  CTTCTGAGGTCAAGAACTGAGTTTCCAGGAATTAAAAATAAAATGTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGGTCAAGAACTGAGTTTCCAGGAATTAAAAATAAAATGTACAC  581

seq1  TTTGTGTACCTTGAATTATTGGATGTAAAGAGTAAGCGTTGTTTGTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTACCTTGAATTATTGGATGTAAAGAGTAAGCGTTGTTTGTACAT  631

seq1  ACTTAGAATGATAAGCCTTGGAATTCCAGCTATGCGTTGCCTTTCAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAATGATAAGCCTTGGAATTCCAGCTATGCGTTGCCTTTCAAAGC  681

seq1  CTTTGCTTTTGTAAGTTTATTAAAGACAGTTATCGAAGACTAGTTTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTTGTAAGTTTATTAAAGACAGTTATCGAAGACTAGTTTTATG  731

seq1  GCTTAAGTTTAATATTTTATCCATCTGGAATCTATTTCAGGATAATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGTTTAATATTTTATCCATCTGGAATCTATTTCAGGATAATGAGT  781

seq1  TAGGTAAGAATCTAGCTTAATTAGTTTCCAAATGACTAGCTAGTCATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGAATCTAGCTTAATTAGTTTCCAAATGACTAGCTAGTCATCAA  831

seq1  AATACAATTTATTGACTAATAAATGTTTTCTCAATAGCTTATACTAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATTTATTGACTAATAAATGTTTTCTCAATAGCTTATACTAAATT  881

seq1  CCCAAATATTCTTAATACTTTCTAACAAAGGACACTAATTTTTAATTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATATTCTTAATACTTTCTAACAAAGGACACTAATTTTTAATTGTA  931

seq1  TTTGTATTGTACTACTTTTCCTACTATAGAGTTGAATAATATTTTAAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTGTACTACTTTTCCTACTATAGAGTTGAATAATATTTTAAATT  981

seq1  TAGTAATGTTATCTTTTAAATACTTTTAAAATTCAGATGTTCCTTGATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGTTATCTTTTAAATACTTTTAAAATTCAGATGTTCCTTGATAA  1031

seq1  TACAGTGTATATATGCCACAAAAATTATTTTAAATTTCCTAATTGCAATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTATATATGCCACAAAAATTATTTTAAATTTCCTAATTGCAATC  1081

seq1  ACAGTTAATCTCATAAATTGGAAGTAAATGAAATAACAATACTTAACTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATCTCATAAATTGGAAGTAAATGAAATAACAATACTTAACTTT  1131

seq1  TTAGAAAGAATTC  1163
      |||||||||||||
seq2  TTAGAAAGAATTC  1144