BAC Information

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BAC

Clone NameB6Ng01-134A17
Chromosome15 (Build37)
Map Location 23,073,617 - 23,246,802
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134A17.bB6Ng01-134A17.g
ACCDH934441DH934442
length1,0441,144
definitionDH934441|Mus musculus domesticus DNA, BAC clone: B6Ng01-134A17, 5' end.DH934442|Mus musculus domesticus DNA, BAC clone: B6Ng01-134A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,073,617 - 23,074,664)(23,245,654 - 23,246,802)
sequence
gaattctgattcctgtccttgtttaaacgtgagtcttctgttctctcctg
tacttgcccagatcaaaggctcaaaaatcatcttcatagtacctataaat
aaacacattagagacaagatgttgagcagacttttatacacactagaaaa
aggtaatattttttcacttcagacaagtatattcatgaagaactcaatgg
ttacagccaatcttcagggaagagcagcccttagtacagttggagcatca
tgatggaaaggaataattttagagaccaccattcctgtgttgctctgttt
ataaatgaaaataaactttgcaagaaagatagcttttgataaaattaacc
agccttgttaatgtataaggcttataagcatgaaaagaaaatggtgaaat
tttattcttttcaaaaataacttttatcaaagaatccatggaaaatttta
acttaattagttttactaaaaataactgaatagttgaatgaagatattta
aaaatactagaatgtaatgtctaattacaaaaagcatgttaactgaaata
aatgaattatttaccttatttaaaattttgaaaaagtataattacattaa
gttagttgtattttttaataagtttctataggtaaaagtgcataccattt
ctgtgcagaaatatcaatattttatgtaaaatttagattccatggttata
aaaagggcaaagttgaaaataaagctaagcatttcatttcttttttaaac
ctttttaaaattaacttgtacctcattaaagagttcattaaacactcata
tgtgaaaatatgaagccctttattgacctttccatagttatgtgttaagc
atttgacatctgtgagtaggtgaaatataatgagaattcaaataaataaa
ctgatacccaggagtaaaaggaataaagttgaatgggatgagtaataaat
gctgcttcaatgcacaagttaccattgtctttgaacttatttaatggaga
aagcttaagattatataagggctttcaacttcataggaagaaca
gaattcacagagatttcaaaagcaggaaacatgaaccacagagagacctt
ctgctgttggcttggagaagtgggggcccttgccagggtacaggacctgg
aagcaggattccagaaaagctcaagatttgtgcttagtttcagcaagctc
ctttggtgccagagctctacgaatatatgtcactagctttaaagttaatg
gttccaagaacctccatctaaaaacccagctcgccatacacatggatttc
cactctctgagaggctacatacagaactcagaacaagagtcctggccttc
tgaacttttatgttggaggacacattgattgtttccaataatgtctaaat
ttgaagaaatctactaaaccttattgagatagtaactctaagaagtgggt
gatatagtctgcctgaaatctcagccaggcagaggtacaggcgatcatgt
ggattcatgtcctgtttaggctaaacattgacttctgtctcaataaataa
aataagacaaaacaaactgctaatgtaacactgcgttggtgacaaaagca
atgggaatactggcagacaaggaaaacatgggtaaaaaaaatcatttcta
ttgagaggtaatacacaggtacaaatgtaaaatgcctacctaatactaca
aataaataaatcatagtattttcaagaggtatattaagtaattaaagtat
ttgctggatgcatattgaatatataattaatctctaagcttaggaggaaa
agttgttagtacatgtctacctgaattttgagatacataatttctctatg
tttattagaacttgatgaaatacttcaaaccaaaatagaccccaattatt
tctagtttgtactaaaattggaggggtaaagtggcactgggtcaacaaaa
ttgctcagcagaagatgtgcttgccttcactgctgatgaccaggttcaat
ccctaagccccacatggaaaggaaataagtgactcccacttttctgttgg
ttgttgtctggttggttgtttctgacttccagctacaactgggacaagtg
caaattacttttaaaaatgcaatctgatctaatgtggtacattatagaga
atagaattgtgcaacaatgaacagaatggcccttctccctgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_23073617_23074664
seq2: B6Ng01-134A17.b_46_1089

seq1  GAATTCTGATTCCTGTCCTTGTTTAAACGTGAGTCTTCTGTTCTCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTCCTGTCCTTGTTTAAACGTGAGTCTTCTGTTCTCTCCTG  50

seq1  TACTTGCCCAGATCAAAGGCTCAAAAATCATCTTCATAGTACCTATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCCAGATCAAAGGCTCAAAAATCATCTTCATAGTACCTATAAAT  100

seq1  AAACACATTAGAGACAAGATGTTGAGCAGACTTTTATACACACTAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTAGAGACAAGATGTTGAGCAGACTTTTATACACACTAGAAAA  150

seq1  AGGTAATATTTTTTCACTTCAGACAAGTATATTCATGAAGAACTCAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATATTTTTTCACTTCAGACAAGTATATTCATGAAGAACTCAATGG  200

seq1  TTACAGCCAATCTTCAGGGAAGAGCAGCCCTTAGTACAGTTGGAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCCAATCTTCAGGGAAGAGCAGCCCTTAGTACAGTTGGAGCATCA  250

seq1  TGATGGAAAGGAATAATTTTAGAGACCACCATTCCTGTGTTGCTCTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAAGGAATAATTTTAGAGACCACCATTCCTGTGTTGCTCTGTTT  300

seq1  ATAAATGAAAATAAACTTTGCAAGAAAGATAGCTTTTGATAAAATTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAAAATAAACTTTGCAAGAAAGATAGCTTTTGATAAAATTAACC  350

seq1  AGCCTTGTTAATGTATAAGGCTTATAAGCATGAAAAGAAAATGGTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTTAATGTATAAGGCTTATAAGCATGAAAAGAAAATGGTGAAAT  400

seq1  TTTATTCTTTTCAAAAATAACTTTTATCAAAGAATCCATGGAAAATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTTCAAAAATAACTTTTATCAAAGAATCCATGGAAAATTTTA  450

seq1  ACTTAATTAGTTTTACTAAAAATAACTGAATAGTTGAATGAAGATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTAGTTTTACTAAAAATAACTGAATAGTTGAATGAAGATATTTA  500

seq1  AAAATACTAGAATGTAATGTCTAATTACAAAAAGCATGTTAACTGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTAGAATGTAATGTCTAATTACAAAAAGCATGTTAACTGAAATA  550

seq1  AATGAATTATTTACCTTATTTAAAATTTTGAAAAAGTATAATTACATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTATTTACCTTATTTAAAATTTTGAAAAAGTATAATTACATTAA  600

seq1  GTTAGTTGTATTTTTTAATAAGTTTCTATAGGTAAAAGTGCATACCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGTATTTTTTAATAAGTTTCTATAGGTAAAAGTGCATACCATTT  650

seq1  CTGTGCAGAAATATCAATATTTTATGTAAAATTTAGATTCCATGGTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAAATATCAATATTTTATGTAAAATTTAGATTCCATGGTTATA  700

seq1  AAAAGGGCAAAGTTGAAAATAAAGCTAAGCATTTCATTTCTTTTTTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCAAAGTTGAAAATAAAGCTAAGCATTTCATTTCTTTTTTAAAC  750

seq1  CTTTTTAAAATTAACTTGTACCTCATTAAAGAGTTCATTAAACACTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAATTAACTTGTACCTCATTAAAGAGTTCATTAAACACTCATA  800

seq1  TGTGAAAATATGAAGCCCTTTATTGACCTTTCCATAGTTATGTGTTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATATGAAGCCCTTTATTGACCTTTCCATAGTTATGTGTTAAGC  850

seq1  ATTTGACATCTGTGAGTAGGTGAAATATAATGAGAATTCAAATAAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTGACATCTGTGAGTAGGTGAAATATAATGAGAATTCAAATAAAT-AA  899

seq1  ACTGATACCCAGGAGTAAAAGGAATAAAGTTGAATGGGATGAGTAATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATACCCAGGAGTAAAAGGAATAAAGTTGAATGGGATGAGTAATAAA  949

seq1  TGCTGCTTCAAATGCACAAAGTTACCATTGTCTTTGAACCTATTTAATGG  1000
      ||||||||| ||||||| ||||||||||||||||||||| ||||||||||
seq2  TGCTGCTTC-AATGCAC-AAGTTACCATTGTCTTTGAACTTATTTAATGG  997

seq1  AGAAAAGCTTAAGA-TATATAAGGGGCTTTCAACTTCATAGGAAGAACA  1048
      || ||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  AG-AAAGCTTAAGATTATATAA-GGGCTTTCAACTTCATAGGAAGAACA  1044

seq1: chr15_23245654_23246802
seq2: B6Ng01-134A17.g_63_1206 (reverse)

seq1  GCCCAGGGAGAAGGGCCA-TCTG-TCATTGTTGCACAATTCTATCTCCTA  48
      |||||||||||||||||| |||| ||||||||||||||||||||   |||
seq2  GCCCAGGGAGAAGGGCCATTCTGTTCATTGTTGCACAATTCTATTCTCTA  50

seq1  TAATGTACCCACATTAGATCAGATTGCATTTTTTAAAAGTAATTTGCACT  98
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  TAATGTA-CCACATTAGATCAGATTGCA-TTTTTAAAAGTAATTTGCACT  98

seq1  TGTCACAGTATGTAACTGGAAGTCAGAAACAAACAAACAGACAAACAAAC  148
      |||| |||| |||| ||||||||||||||||| ||| |||||||   |||
seq2  TGTCCCAGT-TGTAGCTGGAAGTCAGAAACAACCAACCAGACAA--CAAC  145

seq1  AAACAGAAAAGGTGGGAGTCACTTATTTCC-TTCCATGTGGGGCTTAGGG  197
       ||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CAACAGAAAA-GTGGGAGTCACTTATTTCCTTTCCATGTGGGGCTTAGGG  194

seq1  ATTGAACCTGGTCATCAGCAGTGAAGGCAAGCACATCTTCCTGCTGAGCA  247
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTGAACCTGGTCATCAGCAGTGAAGGCAAGCACATCTT-CTGCTGAGCA  243

seq1  ATTTTGTTGACCCAGTGCCACCTTAACCCCTCCAATTTTAGTACAAACTA  297
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  ATTTTGTTGACCCAGTGCCA-CTTTACCCCTCCAATTTTAGTACAAACTA  292

seq1  GAAATAATTGGGGTCTATTTTGGTTTGAAGTATTTCATCAAGTTCTAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTGGGGTCTATTTTGGTTTGAAGTATTTCATCAAGTTCTAATA  342

seq1  AACATAGAGAAATTATGTATCTCAAAATTCAGGTAGACATGTACTAACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAGAAATTATGTATCTCAAAATTCAGGTAGACATGTACTAACAA  392

seq1  CTTTTCCTCCTAAGCTTAGAGATTAATTATATATTCAATATGCATCCAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTCCTAAGCTTAGAGATTAATTATATATTCAATATGCATCCAGC  442

seq1  AAATACTTTAATTACTTAATATACCTCTTGAAAATACTATGATTTATTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTTAATTACTTAATATACCTCTTGAAAATACTATGATTTATTTA  492

seq1  TTTGTAGTATTAGGTAGGCATTTTACATTTGTACCTGTGTATTACCTCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTATTAGGTAGGCATTTTACATTTGTACCTGTGTATTACCTCTC  542

seq1  AATAGAAATGATTTTTTTTACCCATGTTTTCCTTGTCTGCCAGTATTCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATGATTTTTTTTACCCATGTTTTCCTTGTCTGCCAGTATTCCC  592

seq1  ATTGCTTTTGTCACCAACGCAGTGTTACATTAGCAGTTTGTTTTGTCTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTTGTCACCAACGCAGTGTTACATTAGCAGTTTGTTTTGTCTTA  642

seq1  TTTTATTTATTGAGACAGAAGTCAATGTTTAGCCTAAACAGGACATGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTGAGACAGAAGTCAATGTTTAGCCTAAACAGGACATGAAT  692

seq1  CCACATGATCGCCTGTACCTCTGCCTGGCTGAGATTTCAGGCAGACTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGATCGCCTGTACCTCTGCCTGGCTGAGATTTCAGGCAGACTATA  742

seq1  TCACCCACTTCTTAGAGTTACTATCTCAATAAGGTTTAGTAGATTTCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACTTCTTAGAGTTACTATCTCAATAAGGTTTAGTAGATTTCTTC  792

seq1  AAATTTAGACATTATTGGAAACAATCAATGTGTCCTCCAACATAAAAGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGACATTATTGGAAACAATCAATGTGTCCTCCAACATAAAAGTT  842

seq1  CAGAAGGCCAGGACTCTTGTTCTGAGTTCTGTATGTAGCCTCTCAGAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCCAGGACTCTTGTTCTGAGTTCTGTATGTAGCCTCTCAGAGAG  892

seq1  TGGAAATCCATGTGTATGGCGAGCTGGGTTTTTAGATGGAGGTTCTTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCCATGTGTATGGCGAGCTGGGTTTTTAGATGGAGGTTCTTGGA  942

seq1  ACCATTAACTTTAAAGCTAGTGACATATATTCGTAGAGCTCTGGCACCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAACTTTAAAGCTAGTGACATATATTCGTAGAGCTCTGGCACCAA  992

seq1  AGGAGCTTGCTGAAACTAAGCACAAATCTTGAGCTTTTCTGGAATCCTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTGCTGAAACTAAGCACAAATCTTGAGCTTTTCTGGAATCCTGC  1042

seq1  TTCCAGGTCCTGTACCCTGGCAAGGGCCCCCACTTCTCCAAGCCAACAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTCCTGTACCCTGGCAAGGGCCCCCACTTCTCCAAGCCAACAGC  1092

seq1  AGAAGGTCTCTCTGTGGTTCATGTTTCCTGCTTTTGAAATCTCTGTGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTCTCTCTGTGGTTCATGTTTCCTGCTTTTGAAATCTCTGTGAAT  1142

seq1  TC  1149
      ||
seq2  TC  1144