BAC Information

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BAC

Clone NameB6Ng01-135D07
Chromosome15 (Build37)
Map Location 32,209,784 - 32,329,547
singlet/doubletdoublet
Overlap geneSema5a
Upstream gene5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135D07.bB6Ng01-135D07.g
ACCDH935306DH935307
length1,0981,093
definitionDH935306|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D07, 5' end.DH935307|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,328,448 - 32,329,547)(32,209,784 - 32,210,886)
sequence
gaattcccatggttttgagaaatgtcctttctaaatgtcataattttcca
gttaatggtcaaagggatgaagggattattataggcagacgagctgaaaa
ggggagttctcggggacctggaactgtgagaacagaaggagctgtggcca
tgcacaaaagccctgggggtctagataagtgattccagttctcatcattc
cccagaaccacatgaaaaaacaaggacaaagaagagacattaccattcaa
ggcagagtaactttattaaggtaattattctaggttgaaatataaatatc
atgtaatgttatgagataaaatcagacctctagtgcacttagaaaaacat
gtagactagttagtggaaaaagttttcttacttgatattttcaaattcta
cctgggatggactctgtgcctatctgacaccagacatagaaagttgacac
atgcgtacttgaatttattacagttctatctgtcaaaacatagtcagaac
ttaatgacattaatatatgtgtggcaagtgtgcccataaagtatgcataa
aacatgtgttataaagtgaaaattagtaagattataataaaaacaaagat
cctagtagctaatgattaataatgtctattaaattacaaaataggtttgt
caatggaatttatatatgtatttcctgtaaataactttatagtatgtata
ctttcaccctttcttactttccacatgtggagacataagtcaatgaagtt
ttagttagtatgcctcctgccttgctgctgtcatgaatgtgtctggtcct
catttcatacactggcaatgaaacttgaacaagtagctgaagaatcatta
gcagatcttgggagccagtgatctcactgaccaagctttagcttacctgt
gttaaggcctttcagagttccagcccatcagcactgcaaaggccaactca
aatgctctgttgccttttatcatctggcacctatgcccgaaatctgtcta
ttcacttcttcacatacacttacttaaacattggatttgtttacatgaaa
agaatgttctcaatacatacacctatgtggttaaattataggggaata
gaattctgcagatgtgattgaaagtctggatgtaagcgatggatggccca
gtactagctctgccctcagtgtaaccacaggcacagtgagaagaagaggg
tagaggggaatttggcacagagggacagtgtgaggatgaaggagcaaccc
cagccaagggccctagaatacagctctggatgctgaagcaatcatggagc
agagcattttctgtgagcgtctggacagaacatgaacttgcatggaaacc
attttggatttctgagtgccagaggaagaagtttagttgctgtaagctac
caactttatgatgatcttagagtgttaatttattacagggaaaactaata
tgctcttctagtatctgaatagtaaacttttggcctaagggaattgagct
tttaaaattatatgtaacattcacataaaaagcctatgtgaaattaatag
cttcaataccaaagaaggggagaacgaaaattaaaaaaaaaaagttgcta
cattaactctgaggtatagattgttttcaaaagcttcaaaagtaggaggt
ttcagtacgctgtggctctttggcagtgaaccatgaagccctgtcttgta
ccacaacattagacagtcagtgacttaaatttgactgagttccttctggt
cttcccttcctaaccctccggtctcttcccaaccccctgttcttctaccc
accttctcttcccagtcttccttttctccttctttcaagcacaaacaccc
gtttttagctgactcaagttttctgaaagaccactccacaggcttagaat
attttttgatttagcaaaaactttctggagcatcatgggggagaaattaa
atatgaatctttagctctttaatacatttatggggacctagaggagctgt
agtcattttaaatgaaaggcagcctgattacatctactttctagggaatc
tagtctccccctcctactctagacaataatattctgaaagagggactctg
caaggtcctgagcttcctgaaccaccctgtacctggatgctggttgatat
tttcttgaccttgagatctactccaaaatccttcagcgagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32328448_32329547
seq2: B6Ng01-135D07.b_46_1143 (reverse)

seq1  TAATCCCC-ATAATTTAACCACATA-GTGTATGTATATGAGAACATTCTT  48
      || ||||| |||||||||||||||| |||||||||| |||||||||||||
seq2  TATTCCCCTATAATTTAACCACATAGGTGTATGTAT-TGAGAACATTCTT  49

seq1  TTCCATGTTAAACATATCCAATGTTTTAAGTAAGTGTATGTGAAGAAGTG  98
      || |||| |||||| |||||||| ||||||||||||||||||||||||||
seq2  TT-CATG-TAAACAAATCCAATG-TTTAAGTAAGTGTATGTGAAGAAGTG  96

seq1  AATAGACAGATTTCGGGCATAGGTTGCCAGATGATAAAAGGCAACAGAGC  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATAGACAGATTTCGGGCATAGG-TGCCAGATGATAAAAGGCAACAGAGC  145

seq1  ATTTGAGTTGGCCTTTGCAGTGCTGATGGGCTGGAACTCTGAAAGGCCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTTGGCCTTTGCAGTGCTGATGGGCTGGAACTCTGAAAGGCCTT  195

seq1  AACACAGGTAGGCTAAAGCTTGGTCAGTGAGATCACTGGCT-CCAAGATC  247
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  AACACAGGTAAGCTAAAGCTTGGTCAGTGAGATCACTGGCTCCCAAGATC  245

seq1  TGCTAATGATTCTTCAGCTACTTGTTCAAGTTTCATTGCCAGTGTATGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGATTCTTCAGCTACTTGTTCAAGTTTCATTGCCAGTGTATGAA  295

seq1  ATGAGGACCAGACACATTCATGACAGCAGCAAGGCAGGAGGCATACTAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGACCAGACACATTCATGACAGCAGCAAGGCAGGAGGCATACTAAC  345

seq1  TAAAACTTCATTGACTTATGTCTCCACATGTGGAAAGTAAGAAAGGGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTCATTGACTTATGTCTCCACATGTGGAAAGTAAGAAAGGGTGA  395

seq1  AAGTATACATACTATAAAGTTATTTACAGGAAATACATATATAAATTCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACATACTATAAAGTTATTTACAGGAAATACATATATAAATTCCA  445

seq1  TTGACAAACCTATTTTGTAATTTAATAGACATTATTAATCATTAGCTACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAACCTATTTTGTAATTTAATAGACATTATTAATCATTAGCTACT  495

seq1  AGGATCTTTGTTTTTATTATAATCTTACTAATTTTCACTTTATAACACAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTGTTTTTATTATAATCTTACTAATTTTCACTTTATAACACAT  545

seq1  GTTTTATGCATACTTTATGGGCACACTTGCCACACATATATTAATGTCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGCATACTTTATGGGCACACTTGCCACACATATATTAATGTCAT  595

seq1  TAAGTTCTGACTATGTTTTGACAGATAGAACTGTAATAAATTCAAGTACG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTGACTATGTTTTGACAGATAGAACTGTAATAAATTCAAGTACG  645

seq1  CATGTGTCAACTTTCTATGTCTGGTGTCAGATAGGCACAGAGTCCATCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCAACTTTCTATGTCTGGTGTCAGATAGGCACAGAGTCCATCCC  695

seq1  AGGTAGAATTTGAAAATATCAAGTAAGAAAACTTTTTCCACTAACTAGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAATTTGAAAATATCAAGTAAGAAAACTTTTTCCACTAACTAGTC  745

seq1  TACATGTTTTTCTAAGTGCACTAGAGGTCTGATTTTATCTCATAACATTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTTTTCTAAGTGCACTAGAGGTCTGATTTTATCTCATAACATTA  795

seq1  CATGATATTTATATTTCAACCTAGAATAATTACCTTAATAAAGTTACTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATTTATATTTCAACCTAGAATAATTACCTTAATAAAGTTACTCT  845

seq1  GCCTTGAATGGTAATGTCTCTTCTTTGTCCTTGTTTTTTCATGTGGTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAATGGTAATGTCTCTTCTTTGTCCTTGTTTTTTCATGTGGTTCT  895

seq1  GGGGAATGATGAGAACTGGAATCACTTATCTAGACCCCCAGGGCTTTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGATGAGAACTGGAATCACTTATCTAGACCCCCAGGGCTTTTGT  945

seq1  GCATGGCCACAGCTCCTTCTGTTCTCACAGTTCCAGGTCCCCGAGAACTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCACAGCTCCTTCTGTTCTCACAGTTCCAGGTCCCCGAGAACTC  995

seq1  CCCTTTTCAGCTCGTCTGCCTATAATAATCCCTTCATCCCTTTGACCATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCAGCTCGTCTGCCTATAATAATCCCTTCATCCCTTTGACCATT  1045

seq1  AACTGGAAAATTATGACATTTAGAAAGGACATTTCTCAAAACCATGGGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAAATTATGACATTTAGAAAGGACATTTCTCAAAACCATGGGAA  1095

seq1  TTC  1100
      |||
seq2  TTC  1098

seq1: chr15_32209784_32210886
seq2: B6Ng01-135D07.g_69_1161

seq1  GAATTCTGCAGATGTGATTGAAAGTCTGGATGTAAGCGATGGATGGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGATGTGATTGAAAGTCTGGATGTAAGCGATGGATGGCCCA  50

seq1  GTACTAGCTCTGCCCTCAGTGTAACCACAGGCACAGTGAGAAGAAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGCTCTGCCCTCAGTGTAACCACAGGCACAGTGAGAAGAAGAGGG  100

seq1  TAGAGGGGAATTTGGCACAGAGGGACAGTGTGAGGATGAAGGAGCAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGGAATTTGGCACAGAGGGACAGTGTGAGGATGAAGGAGCAACCC  150

seq1  CAGCCAAGGGCCCTAGAATACAGCTCTGGATGCTGAAGCAATCATGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGGGCCCTAGAATACAGCTCTGGATGCTGAAGCAATCATGGAGC  200

seq1  AGAGCATTTTCTGTGAGCGTCTGGACAGAACATGAACTTGCATGGAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTTCTGTGAGCGTCTGGACAGAACATGAACTTGCATGGAAACC  250

seq1  ATTTTGGATTTCTGAGTGCCAGAGGAAGAAGTTTAGTTGCTGTAAGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGATTTCTGAGTGCCAGAGGAAGAAGTTTAGTTGCTGTAAGCTAC  300

seq1  CAACTTTATGATGATCTTAGAGTGTTAATTTATTACAGGGAAAACTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTATGATGATCTTAGAGTGTTAATTTATTACAGGGAAAACTAATA  350

seq1  TGCTCTTCTAGTATCTGAATAGTAAACTTTTGGCCTAAGGGAATTGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTAGTATCTGAATAGTAAACTTTTGGCCTAAGGGAATTGAGCT  400

seq1  TTTAAAATTATATGTAACATTCACATAAAAAGCCTATGTGAAATTAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTATATGTAACATTCACATAAAAAGCCTATGTGAAATTAATAG  450

seq1  CTTCAATACCAAAGAAGGGGAGAACGAAAATTAAAAAAAAAAAGTTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATACCAAAGAAGGGGAGAACGAAAATTAAAAAAAAAAAGTTGCTA  500

seq1  CATTAACTCTGAGGTATAGATTGTTTTCAAAAGCTTCAAAAGTAGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTCTGAGGTATAGATTGTTTTCAAAAGCTTCAAAAGTAGGAGGT  550

seq1  TTCAGTACGCTGTGGCTCTTTGGCAGTGAACCATGAAGCCCTGTCTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACGCTGTGGCTCTTTGGCAGTGAACCATGAAGCCCTGTCTTGTA  600

seq1  CCACAACATTAGACAGTCAGTGACTTAAATTTGACTGAGTTCCTTCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACATTAGACAGTCAGTGACTTAAATTTGACTGAGTTCCTTCTGGT  650

seq1  CTTCCCTTCCTAACCCTCCGGTCTCTTCCCAACCCCCTGTTCTTCTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCCTAACCCTCCGGTCTCTTCCCAACCCCCTGTTCTTCTACCC  700

seq1  ACCTTCTCTTCCCAGTCTTCCTTTTCTCCTTCTTTCAAGCACAAACACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCTTCCCAGTCTTCCTTTTCTCCTTCTTTCAAGCACAAACACCC  750

seq1  GTTTTTAGCTGACTCAAGTTTTCTGAAAGACCACTCCACAGGCTTAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGCTGACTCAAGTTTTCTGAAAGACCACTCCACAGGCTTAGAAT  800

seq1  ATTTTTTGATTTAGCAAAAAC-TTCTGGAGCATCATGGGGGAGAAATTAA  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTTTTGATTTAGCAAAAACTTTCTGGAGCATCATGGGGGAGAAATTAA  850

seq1  ATATGAATCTTTAGCTCTTTAATACATTTATGGGGACCTAGAGGAGCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATCTTTAGCTCTTTAATACATTTATGGGGACCTAGAGGAGCTGT  900

seq1  AGTCATTTTAAATGAAAGGCAGGCCTGATTACATCTACTTTCTAAGGGAA  949
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  AGTCATTTTAAATGAAAGGCA-GCCTGATTACATCTACTTTCT-AGGGAA  948

seq1  TCTAGTCTCCCCCTCCTACTCTAGACAATAATATTCTGAAAGAGGGACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTCCCCCTCCTACTCTAGACAATAATATTCTGAAAGAGGGACTC  998

seq1  TGCAAAGTTCTTGGAGCTTCTGGAACACACCTGTAACCTTGATGGCTGTG  1049
      ||||| || ||  |||||||  ||||   ||||| |||| ||| ||||  
seq2  TGCAAGGTCCT--GAGCTTCCTGAACCACCCTGT-ACCTGGAT-GCTGGT  1044

seq1  TGAATTATTTTCTTGACCTTGGAGATCTACTTCCAAAATACATCAGCGAA  1099
      |||  ||||||||||||||| ||||||||| |||||||| | |||||| |
seq2  TGA--TATTTTCTTGACCTT-GAGATCTAC-TCCAAAATCCTTCAGCG-A  1089

seq1  GAAC  1103
      ||||
seq2  GAAC  1093