BAC Information

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BAC

Clone NameB6Ng01-136C17
Chromosome15 (Build37)
Map Location 98,339,866 - 98,468,070
singlet/doubletdoublet
Overlap gene2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3
Upstream geneLOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1
Downstream geneDdx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136C17.bB6Ng01-136C17.g
ACCDH936015DH936016
length902616
definitionDH936015|Mus musculus domesticus DNA, BAC clone: B6Ng01-136C17, 5' end.DH936016|Mus musculus domesticus DNA, BAC clone: B6Ng01-136C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,467,166 - 98,468,070)(98,339,866 - 98,340,481)
sequence
gaattcttccctgtattctgagatgtcagtttttacagaaaagctaagag
gctaggtaaaagcaatgagtgtaaggaaagaggtttctgaatgttgaggt
tgaagaacagtctcttaaagccactggctatgactacctacctacaagca
gcagaggccagactctttggaaaaggcaaactcacacccctgctgtcaac
caggcctacagcccagcccttccggtgtgcaagagggctggtcagctagg
tgtttggcagccctggaatctgagctaaagactgtgtctattgtaaacca
aatgtcttgaggcagccccagaactgggtagcggtttggggaggcctttt
gttttgcagaagtacaggccagtctgctgcccccctctctccaaccatgg
gagaacaagaccttgacatggggtgagggacctcactcccagaatgtaaa
cgctagctgtgaggtgtggctggcagaagatagagatagatagatagaga
ccagcaggtgaaaagggccttggaggatgaccacctacgatcagatactt
cctcagtacccagcaggtattgggagaagtgtagcttccacctccccaga
tccaagctctcagtccaatttagtccttaatgcctttggggtatctaagg
ctaggtgagctcttaaccctagagattgacagggtctctccttaaaattc
tttaatgggttgtgatctgaatggaagctacttttcataattcccatgtc
ctggggggttgcatacgctggtctggtaccagttgaaagtggagcattct
accctgcagaatggcaggctcttacttccccacccatatgcccccaagcc
agagcgtctcatactctggagctgctggagttggtacagtgccctattgg
tg
gaattctgcagaccaggctggcctcacactcagagatctgcctgcctctg
cctcctgagcgctgggattaaaggcatgtgccaccatgagccttaatggc
aacttggtttcagttcccagaacccacgtggcaactcacaaccatttata
actccagttccagaagatcagaagccctctgctggcctctgagtgcatta
ggcacatatgcactacacatgcacacatgcacacaaaacatccatacaca
taaactttaaaaaaatgtttttttaaagaaaaaatgtaaagcaagcttct
agactcttttttgtaaacattcagtcttgcatttcactttggaaagtggc
ctctgttatcagcagactcatatgaagtgaatatgaaaagacactcccat
ttaatcccccggaacatacttctaacatttcataaagcactgttagaagc
tgacggtatggcagagcagtggtggtgcacgcctttaatcccagcacttg
ggagacagaggcaggagaatttctgagttcgaggccagcctgttctacag
aggaagttccaggacagccagggctacacagagaaaccctgtcttggagg
aggaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98467166_98468070
seq2: B6Ng01-136C17.b_32_933 (reverse)

seq1  CACCACTAGGGCACTGTGCCAACTCCAGCAGCTCCAGAGTACTGAGACGC  50
      ||||| ||||||||||| ||||||||||||||||||||||| ||||||||
seq2  CACCAATAGGGCACTGTACCAACTCCAGCAGCTCCAGAGTA-TGAGACGC  49

seq1  TCTGGCTTTGGGGGCATAATGGGTGGGGAAGTAAGAGCCTGCCATTCTGC  100
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTGGC-TTGGGGGCAT-ATGGGTGGGGAAGTAAGAGCCTGCCATTCTGC  97

seq1  AGGGTAGAATGCTACCTACTTTCTAACTGGTACCAGACCAGCGTATGCAA  150
      |||||||||||||  | |||||| ||||||||||||||||||||||||||
seq2  AGGGTAGAATGCT--CCACTTTC-AACTGGTACCAGACCAGCGTATGCAA  144

seq1  CCCCCCAGGACATGGGAATTATGGAAAGTGGCTTCCATTCAGATCACAAC  200
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  CCCCCCAGGACATGGGAATTATGAAAAGTAGCTTCCATTCAGATCACAAC  194

seq1  CCATTAAAGAA-TTTAAGGAGAGACCCTGTCAATCTCTAGGGTTAAGAGC  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAAGAATTTTAAGGAGAGACCCTGTCAATCTCTAGGGTTAAGAGC  244

seq1  TCACCTAGCC-TAGATACCCCAAAGGCATTAAGGACTAAATTGGACTGAG  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAGCCTTAGATACCCCAAAGGCATTAAGGACTAAATTGGACTGAG  294

seq1  AGCTTGGATCTGGGGAGGTGGAAGCTACACTTCTCCCAATACCTGCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGATCTGGGGAGGTGGAAGCTACACTTCTCCCAATACCTGCTGGG  344

seq1  TACTGAGGAAGTATCTGATCGTAGGTGGTCATCCTCCAAGGCCCTTTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGAAGTATCTGATCGTAGGTGGTCATCCTCCAAGGCCCTTTTCA  394

seq1  CCTGCTGGTCTCTATCTATCTATCTCTATCTTCTGCCAGCCACACCTCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGTCTCTATCTATCTATCTCTATCTTCTGCCAGCCACACCTCAC  444

seq1  AGCTAGCGTTTACATTCTGGGAGTGAGGTCCCTCACCCCATGTCAAGGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCGTTTACATTCTGGGAGTGAGGTCCCTCACCCCATGTCAAGGTC  494

seq1  TTGTTCTCCCATGGTTGGAGAGAGGGGGGCAGCAGACTGGCCTGTACTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCCATGGTTGGAGAGAGGGGGGCAGCAGACTGGCCTGTACTTC  544

seq1  TGCAAAACAAAAGGCCTCCCCAAACCGCTACCCAGTTCTGGGGCTGCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACAAAAGGCCTCCCCAAACCGCTACCCAGTTCTGGGGCTGCCTC  594

seq1  AAGACATTTGGTTTACAATAGACACAGTCTTTAGCTCAGATTCCAGGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTGGTTTACAATAGACACAGTCTTTAGCTCAGATTCCAGGGCT  644

seq1  GCCAAACACCTAGCTGACCAGCCCTCTTGCACACCGGAAGGGCTGGGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACACCTAGCTGACCAGCCCTCTTGCACACCGGAAGGGCTGGGCTG  694

seq1  TAGGCCTGGTTGACAGCAGGGGTGTGAGTTTGCCTTTTCCAAAGAGTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTGGTTGACAGCAGGGGTGTGAGTTTGCCTTTTCCAAAGAGTCTG  744

seq1  GCCTCTGCTGCTTGTAGGTAGGTAGTCATAGCCAGTGGCTTTAAGAGACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCTGCTTGTAGGTAGGTAGTCATAGCCAGTGGCTTTAAGAGACT  794

seq1  GTTCTTCAACCTCAACATTCAGAAACCTCTTTCCTTACACTCATTGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAACCTCAACATTCAGAAACCTCTTTCCTTACACTCATTGCTTT  844

seq1  TACCTAGCCTCTTAGCTTTTCTGT-ACCACTGACATCTCAGAATACAGGG  897
      |||||||||||||||||||||||| |  ||||||||||||||||||||||
seq2  TACCTAGCCTCTTAGCTTTTCTGTAAAAACTGACATCTCAGAATACAGGG  894

seq1  AAGAATTC  905
      ||||||||
seq2  AAGAATTC  902

seq1: chr15_98339866_98340481
seq2: B6Ng01-136C17.g_69_684

seq1  GAATTCTGCAGACCAGGCTGGCCTCACACTCAGAGATCTGCCTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGACCAGGCTGGCCTCACACTCAGAGATCTGCCTGCCTCTG  50

seq1  CCTCCTGAGCGCTGGGATTAAAGGCATGTGCCACCATGAGCCTTAATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAGCGCTGGGATTAAAGGCATGTGCCACCATGAGCCTTAATGGC  100

seq1  AACTTGGTTTCAGTTCCCAGAACCCACGTGGCAACTCACAACCATTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTTTCAGTTCCCAGAACCCACGTGGCAACTCACAACCATTTATA  150

seq1  ACTCCAGTTCCAGAAGATCAGAAGCCCTCTGCTGGCCTCTGAGTGCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTTCCAGAAGATCAGAAGCCCTCTGCTGGCCTCTGAGTGCATTA  200

seq1  GGCACATATGCACTACACATGCACACATGCACACAAAACATCCATACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATATGCACTACACATGCACACATGCACACAAAACATCCATACACA  250

seq1  TAAACTTTAAAAAAATGTTTTTTTAAAGAAAAAATGTAAAGCAAGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTAAAAAAATGTTTTTTTAAAGAAAAAATGTAAAGCAAGCTTCT  300

seq1  AGACTCTTTTTTGTAAACATTCAGTCTTGCATTTCACTTTGGAAAGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTTTTGTAAACATTCAGTCTTGCATTTCACTTTGGAAAGTGGC  350

seq1  CTCTGTTATCAGCAGACTCATATGAAGTGAATATGAAAAGACACTCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTATCAGCAGACTCATATGAAGTGAATATGAAAAGACACTCCCAT  400

seq1  TTAATCCCCCGGAACATACTTCTAACATTTCATAAAGCACTGTTAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCCCGGAACATACTTCTAACATTTCATAAAGCACTGTTAGAAGC  450

seq1  TGACGGTATGGCAGAGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGTATGGCAGAGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTG  500

seq1  GGAGACAGAGGCAGGAGAATTTCTGAGTTCGAGGCCAGCCTGTTCTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGAGGCAGGAGAATTTCTGAGTTCGAGGCCAGCCTGTTCTACAG  550

seq1  AGGAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAGG  600

seq1  AGGAGGAGGAGGAGGA  616
      ||||||||||||||||
seq2  AGGAGGAGGAGGAGGA  616