BAC Information

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BAC

Clone NameB6Ng01-137K14
Chromosome15 (Build37)2 (Build37)
Map Location 17,132,992 - 17,134,13953,189,754 - 53,189,820
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137K14.bB6Ng01-137K14.g
ACCDH937123DH937124
length1,127306
definitionDH937123|Mus musculus domesticus DNA, BAC clone: B6Ng01-137K14, 5' end.DH937124|Mus musculus domesticus DNA, BAC clone: B6Ng01-137K14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,132,992 - 17,134,139)(53,189,754 - 53,189,820)
sequence
gaattcagatataaggagattcccatcttctacagcttccaagctggaac
ttcctcagacatcagtgaagagtacagaacagcactgagatgtggcgagg
cagttgcattcttttgcttctattacactatcttcttccttcttttatcc
caaatgtaatgtgttaattcatatctagagctgtaggcaaacagtgcata
atggctaagtcagagttgtcaaaatttccatttccttaaatattatttaa
agctcgagttaatatgttaagtgtaacctggtatgaactgttctttggac
acatgtgaacagtacatgctgtttgtatcaggatatttagccgtcccatc
atctttttgttaattctggttatggccctggagagtctgtctttcattta
tttataaactagatagtagatgggacctattgtatcctcactctgctgca
taacaccaggaattgattacatttgtcttactgtgtctgtcaccagtaac
caacttcccttttactccattttcatgacttgttcttattaaacaatact
ctaaatttacatcaactttttaatttttcgcctatgaaaagtagcatatc
atatctgtaattctgtgtatgtgacatattttaaatggctttatcgagac
agggtttctctgtatagcccttgctgtcctggaactcgcctctgtagacc
aggctggcctcgaactcagaaatccacctgcctctgcctcccgagttctg
ggtgagattaaaggcctgagccactactgcccagctatccttcagtactc
tttttttttttttactgcaaaagatatattttttattcatctactgagtt
gtactgaatgatatgtaaaatgtttaatgaatgcataaactttcagttgc
tacccaacttgatattttgtttcttttgatgatggatagtactgaggtaa
ttgcaggggttgagtttcccttggtcatactgatttttatgaccaattat
attgtccaaagtaggcagctgagcagtggcagtcagtgttgaagaaattt
catgcttgtttcgttttgttttgtttgttgtgagatgagattcatctttc
atacttattggggttttctttctacat
agcattagaacattatttagtaggtaatttgctgcctatgaaagcaagag
aacccatgttagatctctgggatcaatgtgaaaagcaaatgtcaaggcat
gtttctgtattcacatggctgagagacagaggaatctgggagcatgtctg
atcaaatagtttcgaagaattgataaaaccatgcctaataagagaccctg
tctgaaaaacaaaagtggggaacagaggttggcacctgatctctctctct
ctctctctctctctctctctctctctctctctctctctctctctctctct
ctgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17132992_17134139
seq2: B6Ng01-137K14.b_45_1171

seq1  GAATTCAGATATAAGGAGATTCCCATCTTCTACAGCTTCCAAGCTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATAAGGAGATTCCCATCTTCTACAGCTTCCAAGCTGGAAC  50

seq1  TTCCTCAGACATCAGTGAAGAGTACAGAACAGCACTGAGATGTGGCGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGACATCAGTGAAGAGTACAGAACAGCACTGAGATGTGGCGAGG  100

seq1  CAGTTGCATTCTTTTGCTTCTATTACACTATCTTCTTCCTTCTTTTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCATTCTTTTGCTTCTATTACACTATCTTCTTCCTTCTTTTATCC  150

seq1  CAAATGTAATGTGTTAATTCATATCTAGAGCTGTAGGCAAACAGTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAATGTGTTAATTCATATCTAGAGCTGTAGGCAAACAGTGCATA  200

seq1  ATGGCTAAGTCAGAGTTGTCAAAATTTCCATTTCCTTAAATATTATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAGTCAGAGTTGTCAAAATTTCCATTTCCTTAAATATTATTTAA  250

seq1  AGCTCGAGTTAATATGTTAAGTGTAACCTGGTATGAACTGTTCTTTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGAGTTAATATGTTAAGTGTAACCTGGTATGAACTGTTCTTTGGAC  300

seq1  ACATGTGAACAGTACATGCTGTTTGTATCAGGATATTTAGCCGTCCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAACAGTACATGCTGTTTGTATCAGGATATTTAGCCGTCCCATC  350

seq1  ATCTTTTTGTTAATTCTGGTTATGGCCCTGGAGAGTCTGTCTTTCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGTTAATTCTGGTTATGGCCCTGGAGAGTCTGTCTTTCATTTA  400

seq1  TTTATAAACTAGATAGTAGATGGGACCTATTGTATCCTCACTCTGCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACTAGATAGTAGATGGGACCTATTGTATCCTCACTCTGCTGCA  450

seq1  TAACACCAGGAATTGATTACATTTGTCTTACTGTGTCTGTCACCAGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCAGGAATTGATTACATTTGTCTTACTGTGTCTGTCACCAGTAAC  500

seq1  CAACTTCCCTTTTACTCCATTTTCATGACTTGTTCTTATTAAACAATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCCTTTTACTCCATTTTCATGACTTGTTCTTATTAAACAATACT  550

seq1  CTAAATTTACATCAACTTTTTAATTTTTCGCCTATGAAAAGTAGCATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTACATCAACTTTTTAATTTTTCGCCTATGAAAAGTAGCATATC  600

seq1  ATATCTGTAATTCTGTGTATGTGACATATTTTAAATGGCTTTATCGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTAATTCTGTGTATGTGACATATTTTAAATGGCTTTATCGAGAC  650

seq1  AGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCGCCTCTGTAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCGCCTCTGTAGACC  700

seq1  AGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCTG  750

seq1  GGTGAGATTAAAGGCCTGAGCCACTACTGCCCAGCTATCCTTCAGTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATTAAAGGCCTGAGCCACTACTGCCCAGCTATCCTTCAGTACTC  800

seq1  TTTTTTTTTTTTTACTGCAAAAGATATA-TTTTTATTCATCTACTGAGTT  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTTTTTTTTTTACTGCAAAAGATATATTTTTTATTCATCTACTGAGTT  850

seq1  GTACTGAATGATATGTAAAATGTTTAATGAATGCATAAACTTTCAGTTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAATGATATGTAAAATGTTTAATGAATGCATAAACTTTCAGTTGC  900

seq1  TACCCAACTTGATACTTTGTTTC-TGTGATGATGGATAGTACTGAGGTAA  948
      |||||||||||||| |||||||| | ||||||||||||||||||||||||
seq2  TACCCAACTTGATATTTTGTTTCTTTTGATGATGGATAGTACTGAGGTAA  950

seq1  TTGCAGGGGTTGAGATATCCCTTGGTCATACTGAATTTTTATGACCAATT  998
      |||||||||||||| | |||||||||||||||| ||||||||||||||||
seq2  TTGCAGGGGTTGAG-TTTCCCTTGGTCATACTG-ATTTTTATGACCAATT  998

seq1  ATATTGTCCAAAGTAGGCAAGCTGGAGCAGTGGGCAGTCAGGTGTTGGAA  1048
      |||||||||||||||||| |||| ||||||| |||||||| ||||| |||
seq2  ATATTGTCCAAAGTAGGC-AGCT-GAGCAGT-GGCAGTCA-GTGTT-GAA  1043

seq1  GAAATTTCATGGTTTTGTTTCGTTTTGTTTTGTTTTGTTTTGTGAGATGT  1098
      |||||||||||   ||||||||||||||||||||   | |||||||||| 
seq2  GAAATTTCATG--CTTGTTTCGTTTTGTTTTGTT---TGTTGTGAGATG-  1087

seq1  AGTAATTCATCTTTCCATTACATTATTGGGGTGTTTTCTTTTCTCTACAT  1148
      ||  |||||||||||   ||| ||||||||  ||||||||   |||||||
seq2  AG--ATTCATCTTTC--ATAC-TTATTGGG--GTTTTCTT---TCTACAT  1127

seq1: chr2_53189754_53189820
seq2: B6Ng01-137K14.g_314_380 (reverse)

seq1  ACACAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGA  67
      |||||||||||||||||
seq2  AGAGAGAGAGAGAGAGA  67