BAC Information

Click to search

BAC

Clone NameB6Ng01-138B20
Chromosome15 (Build37)
Map Location 98,612,026 - 98,762,609
singlet/doubletdoublet
Overlap geneWnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b
Upstream gene4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b
Downstream geneTuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138B20.bB6Ng01-138B20.g
ACCDH937460DH937461
length809553
definitionDH937460|Mus musculus domesticus DNA, BAC clone: B6Ng01-138B20, 5' end.DH937461|Mus musculus domesticus DNA, BAC clone: B6Ng01-138B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,612,026 - 98,612,834)(98,762,051 - 98,762,609)
sequence
gaattccaggctacaaggctagcctagtatacatggtaaattccaggcca
gcctgggctatatagtatgactgcctcaaaacaaaacaacaacaacaaaa
ccccaagatatctaaaggaggaacattccaaaagacagaaatgtccatag
accttgacaaaggaacatgcttggtatgttggaagggtcagaaagatcaa
taaaggagtaattcacaagggaagatttggttggttgtgaacctgaagac
ctaagaaggaacagggtcagacctggagaggcctgctagttactgtcaag
attttgggtttggagtgagataaggaatcattggaaagatgtgatcaggg
aaattaatttttatttgtttacttttaaaattgcttgtgttcggttctgt
gtttggaggccagaggtgctggagttacagacagttgtgagctacctgaa
gtgggagcagggaattgaatcaggtcctctgtaaggccgggtatattctc
ttaactcctgggccatctctcaagcccagctttgttttcagaaagggtag
tttgaactgcagttggagagaaggctgtaggctagaagggagaagctgga
gatgtgtgctttacagactgagagtcagggtttgctgatagcctcacatg
aggtgtgaaacagataagccaaggttgatacacaatttaaaattaaggtc
catatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctggtgcct
ggagcctgcaaagttacttcctgattcaaagattttttttttttggctat
gaagataaa
cagaccaacctggtaccctaccctcgcatccacttccctctggccactta
tgcccctgtcatctctgctgagaaagcctaccatgagcagctttctgtag
cagagatcaccaatgcctgctttgagccagccaaccagatggtgaaatgt
gaccctcgccatggtaaatacatggcttgctgcctgctataccgtggtga
tgtggttcccaaagatgtcaatgctgccattgccaccatcaagaccaagc
gcagcatccagtttgtagactggtgccccactggcttcaaggttggcatt
aattaccagcctcccactgtggtacccggtggtgacctggccaaggtgca
gagagctgtgtgcatgctgagcaacaccacagccattgctgaggcctggg
ctcgcctagatcacaagtttgatctgatgtatgccaagcgtgcctttgtg
cactggtatgtgggtgagggcatggaggagggtgagttctctgaggcccg
tgaggacatggctgccctagagaaggattatgaggaggttggtgtggatt
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98612026_98612834
seq2: B6Ng01-138B20.b_43_851

seq1  GAATTCCAGGCTACAAGGCTAGCCTAGTATACATGGTAAATTCCAGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTACAAGGCTAGCCTAGTATACATGGTAAATTCCAGGCCA  50

seq1  GCCTGGGCTATATAGTATGACTGCCTCAAAACAAAACAACAACAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCTATATAGTATGACTGCCTCAAAACAAAACAACAACAACAAAA  100

seq1  CCCCAAGATATCTAAAGGAGGAACATTCCAAAAGACAGAAATGTCCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGATATCTAAAGGAGGAACATTCCAAAAGACAGAAATGTCCATAG  150

seq1  ACCTTGACAAAGGAACATGCTTGGTATGTTGGAAGGGTCAGAAAGATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACAAAGGAACATGCTTGGTATGTTGGAAGGGTCAGAAAGATCAA  200

seq1  TAAAGGAGTAATTCACAAGGGAAGATTTGGTTGGTTGTGAACCTGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGTAATTCACAAGGGAAGATTTGGTTGGTTGTGAACCTGAAGAC  250

seq1  CTAAGAAGGAACAGGGTCAGACCTGGAGAGGCCTGCTAGTTACTGTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGAACAGGGTCAGACCTGGAGAGGCCTGCTAGTTACTGTCAAG  300

seq1  ATTTTGGGTTTGGAGTGAGATAAGGAATCATTGGAAAGATGTGATCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGTTTGGAGTGAGATAAGGAATCATTGGAAAGATGTGATCAGGG  350

seq1  AAATTAATTTTTATTTGTTTACTTTTAAAATTGCTTGTGTTCGGTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTTTTATTTGTTTACTTTTAAAATTGCTTGTGTTCGGTTCTGT  400

seq1  GTTTGGAGGCCAGAGGTGCTGGAGTTACAGACAGTTGTGAGCTACCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGGCCAGAGGTGCTGGAGTTACAGACAGTTGTGAGCTACCTGAA  450

seq1  GTGGGAGCAGGGAATTGAATCAGGTCCTCTGTAAGGCCGGGTATATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCAGGGAATTGAATCAGGTCCTCTGTAAGGCCGGGTATATTCTC  500

seq1  TTAACTCCTGGGCCATCTCTCAAGCCCAGCTTTGTTTTCAGAAAGGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCTGGGCCATCTCTCAAGCCCAGCTTTGTTTTCAGAAAGGGTAG  550

seq1  TTTGAACTGCAGTTGGAGAGAAGGCTGTAGGCTAGAAGGGAGAAGCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTGCAGTTGGAGAGAAGGCTGTAGGCTAGAAGGGAGAAGCTGGA  600

seq1  GATGTGTGCTTTACAGACTGAGAGTCAGGGTTTGCTGATAGCCTCACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGCTTTACAGACTGAGAGTCAGGGTTTGCTGATAGCCTCACATG  650

seq1  AGGTGTGAAACAGATAAGCCAAGGTTGATACACAATTTAAAATTAAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAAACAGATAAGCCAAGGTTGATACACAATTTAAAATTAAGGTC  700

seq1  CATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGGTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGGTGCCT  750

seq1  GGTGCCTGCAGAGGCTAC-TCCTGATTCAAAGATTTTTTTTTTTTTGCCA  799
      || ||||||| | | ||| |||||||||||||||||||||||||| || |
seq2  GGAGCCTGCA-AAGTTACTTCCTGATTCAAAGATTTTTTTTTTTTGGCTA  799

seq1  TGAAGATAAA  809
      ||||||||||
seq2  TGAAGATAAA  809

seq1: chr15_98762051_98762609
seq2: B6Ng01-138B20.g_66_624 (reverse)

seq1  CAGAATCCACACCAACCTCCTCATAATCCTTCTCTAGGGCAGCCATGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCACACCAACCTCCTCATAATCCTTCTCTAGGGCAGCCATGTCC  50

seq1  TCACGGGCCTCAGAGAACTCACCCTCCTCCATGCCCTCACCCACATACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGCCTCAGAGAACTCACCCTCCTCCATGCCCTCACCCACATACCA  100

seq1  GTGCACAAAGGCACGCTTGGCATACATCAGATCAAACTTGTGATCTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAAAGGCACGCTTGGCATACATCAGATCAAACTTGTGATCTAGGC  150

seq1  GAGCCCAGGCCTCAGCAATGGCTGTGGTGTTGCTCAGCATGCACACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGGCCTCAGCAATGGCTGTGGTGTTGCTCAGCATGCACACAGCT  200

seq1  CTCTGCACCTTGGCCAGGTCACCACCGGGTACCACAGTGGGAGGCTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACCTTGGCCAGGTCACCACCGGGTACCACAGTGGGAGGCTGGTA  250

seq1  ATTAATGCCAACCTTGAAGCCAGTGGGGCACCAGTCTACAAACTGGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGCCAACCTTGAAGCCAGTGGGGCACCAGTCTACAAACTGGATGC  300

seq1  TGCGCTTGGTCTTGATGGTGGCAATGGCAGCATTGACATCTTTGGGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTTGGTCTTGATGGTGGCAATGGCAGCATTGACATCTTTGGGAACC  350

seq1  ACATCACCACGGTATAGCAGGCAGCAAGCCATGTATTTACCATGGCGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCACGGTATAGCAGGCAGCAAGCCATGTATTTACCATGGCGAGG  400

seq1  GTCACATTTCACCATCTGGTTGGCTGGCTCAAAGCAGGCATTGGTGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTTCACCATCTGGTTGGCTGGCTCAAAGCAGGCATTGGTGATCT  450

seq1  CTGCTACAGAAAGCTGCTCATGGTAGGCTTTCTCAGCAGAGATGACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACAGAAAGCTGCTCATGGTAGGCTTTCTCAGCAGAGATGACAGGG  500

seq1  GCATAAGTGGCCAGAGGGAAGTGGATGCGAGGGTAGGGTACCAGGTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTGGCCAGAGGGAAGTGGATGCGAGGGTAGGGTACCAGGTTGGT  550

seq1  CTGGAATTC  559
      |||||||||
seq2  CTGGAATTC  559