BAC Information

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BAC

Clone NameB6Ng01-138J06
Chromosome15 (Build37)
Map Location 82,596,762 - 82,597,816
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik
Downstream geneLOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138J06.bB6Ng01-138J06.g
ACCDH937801DH937802
length1,0461,219
definitionDH937801|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J06, 5' end.DH937802|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtacagttctattgtgtctgttgacattctaggagaatgcaa
aaggctctgcaagctcttccccaccttcctggaatcctgtgactccaggg
ctgttttgatagaatcacaaattgtattgtggcctcattatcctattaat
aagtgacagtgggcattgtttatttggttgtcagcctgtctctgcacttt
gtctgtgcagtgtctttgtctcatcattgctatagatatctgatacataa
ttttatttctgactattactatcttgtaggacctctgggttgcattcctg
tcttccacggtttgtgtcctttcctcccttttaacagtgaccatttcaaa
gaatatttggtattttttttttatttaggcatagatgaggtgtgtgtgtg
tgtgtgtgtcttgcatatatgtggatgtacgagggagttggttcaaccat
aaagagttagtagagttctactatatcactccaagaactcaaactcagga
tgttgggctgggttgcaggtgtttacccaccaagtcacctcagcagcctg
gaagtaacttgtgacatgaaagtttttaaccattacataaacccagcttg
gtattagttctttgatggtttggtcactcagactacgttctttgtgacca
gaaaactatttggatgtaagaatagttttacaaactccaactacttcttc
agcatgggaggtggaaatggaggttggtcagtgtcatgatcctgctcagc
agtcccctttgtgttcattttaggaatacacaaaataatccttctgaatt
atattgaggtttattctccatatttaacattttgttacataccacgtgaa
tttatattcaagctttggtttgtggtttgagatttcatgggttggcagac
caatggtatgggccacagttcactgagcctcacaacattaaggggacagt
caccatccagggatgaaagtgtaaccagccattgccaactctgccattct
tgcctaacaaagtattcccaggagcctcaaagtcacatcaccaaag
gaattcatcatctgattcagagctaccaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatatttcctctttgttcctactctctctccc
cactttacttctgatagcttgtcctgaatttcctctagaattttcagccc
tatcttaatcacttgataacatgtgaaaaggaacaaaagggctcctaaca
ccagaaaaaattcaaggccaaacataacttgtaaagccattttccacttt
acttctgatagactgtcttgaatttcgttagaaagttcaaggccaggctt
acctcgtaaagctatactcactggtactctcgttccccagctgaaaagtt
ctgaattcatacagttgaatccttcttaacagtctgctttacgggaacct
ttattaccgcgacccgcagttctggttccggaatgagggatcttccttgt
accggtgatggtaaactctcgtcccgagttttttctcgtcccggattttc
tcgtcccggatttcagcaccaattgttattaaacgcgttctcacgcccgg
ccaggaagaacaccacagaccagaatcttctgcggcaaaactttattgct
tacatcttcaggagcaagagtgtaagaagcaagagagcgagaaaacgaaa
ccccgtccctattaagagaattatccttcgcctaggacgtgtcactccct
gattggctgcagcccatcggccgagttgacgtcacgggaaggcagagcac
atggagtggagaaccccctcggcacatgcgcagattatttgtttaccact
tagacacagctgtcagcgcatcttgtacggcgatgtggggcgcggctcca
cactgagttgattatttctgatgcctactcctctggggtatgatcttttg
ttctagagcttccaggtggctgtcagctgctagtatagatctttcagttc
ttgaagacatgagctatagatttccctgacactgcttcatggtcttagtg
acttagttctcattccaagttccaagcgtaattttccgatatctctacca
cgagactctaatgaagacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82596762_82597816
seq2: B6Ng01-138J06.b_43_1088 (reverse)

seq1  CTTTGGGTGACTGTGACTCTTGAGGGCTCCTTGGGAAAACTTTGTTAGGG  50
      |||| ||||| ||||||| |||| |||||| |||||| ||||||||||| 
seq2  CTTT-GGTGA-TGTGACT-TTGA-GGCTCC-TGGGAATACTTTGTTAGG-  44

seq1  CAAAGAATGGCAGAGGTTGGCAATGGCTGGTTACACTTTCATCCCTGGAT  100
        |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  -CAAGAATGGCAGA-GTTGGCAATGGCTGGTTACACTTTCATCCCTGGAT  92

seq1  GGTGACTGTTCCCCTTATGTTGTGAGGCTCAGTGGAACTGTGGCCCATTA  150
      ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||
seq2  GGTGACTGTCCCCTTAATGTTGTGAGGCTCAGT-GAACTGTGGCCCA-TA  140

seq1  CCA-TGGTCTGCTAA-CCATGAAATCTCAAACCACAAAACCAAAGCTTG-  197
      ||| |||||||| || ||||||||||||||||||| ||||||||||||| 
seq2  CCATTGGTCTGCCAACCCATGAAATCTCAAACCAC-AAACCAAAGCTTGA  189

seq1  ATAT-AATTCACGTGGTATGTAACAAAATGTAAAATATGGAGAATAAACC  246
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATATAAATTCACGTGGTATGTAACAAAATGTTAAATATGGAGAATAAACC  239

seq1  TCAAATATAATTCAAGAAGGATTATTTTGTGTATTCCTAAAATGAACACA  296
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TC-AATATAATTC-AGAAGGATTATTTTGTGTATTCCTAAAATGAACACA  287

seq1  AAGGGGACTGCTGAGCAGGATCATGACACTGACCAACCTCCATTTCCACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACTGCTGAGCAGGATCATGACACTGACCAACCTCCATTTCCACC  337

seq1  TCCCATGCTGAAGAAGTAGTTGGAGTTTGTAAAACTATTCTTACATCCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCTGAAGAAGTAGTTGGAGTTTGTAAAACTATTCTTACATCCAA  387

seq1  ATAGTTTTCTGGTCACAAAGAACGTAGTCTGAGTGACCAAACCATCAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTCTGGTCACAAAGAACGTAGTCTGAGTGACCAAACCATCAAAG  437

seq1  AACTAATACCAAGCTGGGTTTATGTAATGGTTAAAAACTTTCATGTCACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATACCAAGCTGGGTTTATGTAATGGTTAAAAACTTTCATGTCACA  487

seq1  AGTTACTTCCAGGCTGCTGAGGTGACTTGGTGGGTAAACACCTGCAACCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTCCAGGCTGCTGAGGTGACTTGGTGGGTAAACACCTGCAACCC  537

seq1  AGCCCAACATCCTGAGTTTGAGTTCTTGGAGTGATATAGTAGAACTCTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAACATCCTGAGTTTGAGTTCTTGGAGTGATATAGTAGAACTCTAC  587

seq1  TAACTCTTTATGGTTGAACCAACTCCCTCGTACATCCACATATATGCAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTATGGTTGAACCAACTCCCTCGTACATCCACATATATGCAAG  637

seq1  ACACACACACACACACACACCTCATCTATGCCTAAATAAAAAAAAAATAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACCTCATCTATGCCTAAATAAAAAAAAAATAC  687

seq1  CAAATATTCTTTGAAATGGTCACTGTTAAAAGGGAGGAAAGGACACAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTCTTTGAAATGGTCACTGTTAAAAGGGAGGAAAGGACACAAAC  737

seq1  CGTGGAAGACAGGAATGCAACCCAGAGGTCCTACAAGATAGTAATAGTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAGACAGGAATGCAACCCAGAGGTCCTACAAGATAGTAATAGTCA  787

seq1  GAAATAAAATTATGTATCAGATATCTATAGCAATGATGAGACAAAGACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAATTATGTATCAGATATCTATAGCAATGATGAGACAAAGACAC  837

seq1  TGCACAGACAAAGTGCAGAGACAGGCTGACAACCAAATAAACAATGCCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACAAAGTGCAGAGACAGGCTGACAACCAAATAAACAATGCCCA  887

seq1  CTGTCACTTATTAATAGGATAATGAGGCCACAATACAATTTGTGATTCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTTATTAATAGGATAATGAGGCCACAATACAATTTGTGATTCTA  937

seq1  TCAAAACAGCCCTGGAGTCACAGGATTCCAGGAAGGTGGGGAAGAGCTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAGCCCTGGAGTCACAGGATTCCAGGAAGGTGGGGAAGAGCTTG  987

seq1  CAGAGCCTTTTGCATTCTCCTAGAATGTCAACAGACACAATAGAACTGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTTTTGCATTCTCCTAGAATGTCAACAGACACAATAGAACTGTA  1037

seq1  CAGGAATTC  1055
      |||||||||
seq2  CAGGAATTC  1046