BAC Information

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BAC

Clone NameB6Ng01-138P11
Chromosome15 (Build37)
Map Location 42,320,305 - 42,442,095
singlet/doubletdoublet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138P11.bB6Ng01-138P11.g
ACCDH938077DH938078
length1,1741,144
definitionDH938077|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P11, 5' end.DH938078|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,440,901 - 42,442,095)(42,320,305 - 42,321,458)
sequence
gaattcttttcaggttaaaaagagaagttactcaaaccattcccctctat
ctctaacagtgcagtcagagaatgattacaggtattggagaataactttt
attgagcattaatgatgttcctggtagaacatgaacctaagacataacct
agaaaattcaggcagttttgtttgtctgtttgttttgtcttgttttgttg
tttagagatgggagaatttatccttaagagcagtacctttaaaaacaaca
acaacaacaaaaacagagggaagcaatcctgggtaggaagatgagctaca
cactaagacagctgtaacagaacccagtgctaatcccagaagtcactgtg
gctgtataatcaccttttggagagtcatatctttgtgactctgtatccaa
gaatctgtcaaacatggaagggacaaaatcctaaggacaagcagtgccct
tcaactaaaggcatgtataatcctgagtgccaagcagtcagcactccatg
cctgtctcattttgttggtgttgtgctgagaaattcgtagaacctggctc
tgaatagggggcaggttggggtctgcttcccctactgtctgtgcatttca
atggtgtgaagctctcagcatgcaaatgtgggttaccaatttgacttaag
tgaacctaaggttgagaagaaatttgttcacgtctgtctaaggttgagaa
gatattcgttcacatctgtctcttgctgcagcatgtgcgggttctcacct
acaactatgttggtctttgcaaagccttcatcaaaaggaatattagcagt
atttgcgaaattcttgttccattcctgtttccacacagcctacagtcaca
gggtcattacaaactttgctgcaaaaaaataagccaaaccaaagcaaaac
aacccaaaattctgaggctgtagggcctggcctgatgctttccctttcag
tctatgtaagtctgagtaaagtatacttttaaagttttattcaagtgcag
attctgcagctgatacagtgatttcattaactgaaacacttagactgatg
atagaaatttatgagtcagttagcccaggcctttttgtgctctaaactat
taatattcaggagttctgatgtttcgactaagaaacttcacaatgcaggg
ttcatgtgaataaaaaaaaaagct
gaattcttttaaagagactcttgtgggaagcttccataacttgtaatgtg
gatctctaggtaaggaactgagtatattcctattcctgtgtcctctgtac
accgaggatattcctatccctgtgtcctctgtacactgaggatattctta
tccccatgtcctctgtacactgaggatattcatatccctgtgtcctctgt
acactgaggatattcctattcctgtgtcctctgtacactgaggatattcc
tatccccgtgtcctctgtacactgaggatattcctatccctgtgtcctct
gtacactgaggatattcctattcctgtgtcctctgtacactgaggatatt
cctatcccttgtcctctgtacactgaggatgttcctattcctgtgtcctc
tgtacactgaggatattcctatcccttgtcctatgtacactgagtatatt
cctatcctcatgtcctctgtacactgagtatattcctaaccccatgtcct
ctgcacactgagtatattcctatccccatgtcctctgcacactgaggata
ttcctatccctgtgtcctctgtacactgaggatattcctatccccatgtc
ctctgcacactgaggatattcctatccccatgtcctctgcacactgagta
tattcctatccccatgtcctctgtacactgaggatattcctattcctgtg
tcctctgtacactgaggatattcctatcccatgtcctctgtacactgagg
ttattcctattactgtgtcctctgtgcactgagtatattcctatccccgt
gtcctctgtacactgaggatattcctatccccgtgtcctctgtacactga
ggatatttcctgtccgcatgtcttgtgtacactaagtacattcttacccc
tcatatcctctgtacactgaatatattcctatccctgtgtcttctgtaca
ctgagtatatcctatttctatatcctctgtatattgaatatatcttatcc
ccggtgtccttttactcatttttgtttctttctctcctggtgcatttccc
aacgtaaactttcactgtctttggaattcagtttttggaatgcagaatat
tctcatctatgccatgagctatgcaatacctttgcctttcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42440901_42442095
seq2: B6Ng01-138P11.b_46_1219 (reverse)

seq1  AGCTTTTTTTTTTTTTATTTCAACATGAACACCTGCATTTGTGAAAGTTT  50
      ||||||||||||| ||      |||||||| |||||| ||||| ||||||
seq2  AGCTTTTTTTTTTATT-----CACATGAAC-CCTGCA-TTGTG-AAGTTT  42

seq1  CTTTAGTCTGAAACATTCAGAACTCCTGAATATTATTAGGTTTAGAGCAC  100
      | |||||| |||||| ||||||||||||||||||| || |||||||||||
seq2  C-TTAGTC-GAAACA-TCAGAACTCCTGAATATTAATA-GTTTAGAGCAC  88

seq1  AAAAAGCCCTGGGCTAACTTGACTCATAAATTTCCTTATCATTCAGTCTA  150
      |||||| ||||||||||| |||||||||||||||  ||||| ||||||||
seq2  AAAAAGGCCTGGGCTAAC-TGACTCATAAATTTC--TATCA-TCAGTCTA  134

seq1  AGTGTTTCAGTTAATGGAAATCACTGTATCAGCTGCCAGAATCTGCACTT  200
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  AGTGTTTCAGTTAAT-GAAATCACTGTATCAGCTG-CAGAATCTGCACTT  182

seq1  GAATAAAACTTTAAAAGTATACTTTTACTCAGACTTACATAGAACTGAAA  250
      |||||||||||||||||||||| ||||||||||||||||||| |||| ||
seq2  GAATAAAACTTTAAAAGTATAC-TTTACTCAGACTTACATAG-ACTG-AA  229

seq1  AGGGAAAGCATCAGGCCAGGCCCTACAGCCTCAGAATTTTGGGTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCATCAGGCCAGGCCCTACAGCCTCAGAATTTTGGGTTGTTTT  279

seq1  GCTTTGGTTTGGCTTATTTTTTTGCAGCAAAGTTTGTAATGACCCTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTTTGGCTTATTTTTTTGCAGCAAAGTTTGTAATGACCCTGTGA  329

seq1  CTGTAGGCTGTGTGGAAACAGGAATGGAACAAGAATTTCGCAAATACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGCTGTGTGGAAACAGGAATGGAACAAGAATTTCGCAAATACTGC  379

seq1  TAATATTCCTTTTGATGAAGGCTTTGCAAAGACCAACATAGTTGTAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCCTTTTGATGAAGGCTTTGCAAAGACCAACATAGTTGTAGGTG  429

seq1  AGAACCCGCACATGCTGCAGCAAGAGACAGATGTGAACGAATATCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCGCACATGCTGCAGCAAGAGACAGATGTGAACGAATATCTTCTC  479

seq1  AACCTTAGACAGACGTGAACAAATTTCTTCTCAACCTTAGGTTCACTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGACAGACGTGAACAAATTTCTTCTCAACCTTAGGTTCACTTAA  529

seq1  GTCAAATTGGTAACCCACATTTGCATGCTGAGAGCTTCACACCATTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTGGTAACCCACATTTGCATGCTGAGAGCTTCACACCATTGAAA  579

seq1  TGCACAGACAGTAGGGGAAGCAGACCCCAACCTGCCCCCTATTCAGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACAGTAGGGGAAGCAGACCCCAACCTGCCCCCTATTCAGAGCC  629

seq1  AGGTTCTACGAATTTCTCAGCACAACACCAACAAAATGAGACAGGCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTACGAATTTCTCAGCACAACACCAACAAAATGAGACAGGCATGG  679

seq1  AGTGCTGACTGCTTGGCACTCAGGATTATACATGCCTTTAGTTGAAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGACTGCTTGGCACTCAGGATTATACATGCCTTTAGTTGAAGGGC  729

seq1  ACTGCTTGTCCTTAGGATTTTGTCCCTTCCATGTTTGACAGATTCTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGTCCTTAGGATTTTGTCCCTTCCATGTTTGACAGATTCTTGGA  779

seq1  TACAGAGTCACAAAGATATGACTCTCCAAAAGGTGATTATACAGCCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTCACAAAGATATGACTCTCCAAAAGGTGATTATACAGCCACAG  829

seq1  TGACTTCTGGGATTAGCACTGGGTTCTGTTACAGCTGTCTTAGTGTGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGGGATTAGCACTGGGTTCTGTTACAGCTGTCTTAGTGTGTAG  879

seq1  CTCATCTTCCTACCCAGGATTGCTTCCCTCTGTTTTTGTTGTTGTTGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTCCTACCCAGGATTGCTTCCCTCTGTTTTTGTTGTTGTTGTTG  929

seq1  TTTTTAAAGGTACTGCTCTTAAGGATAAATTCTCCCATCTCTAAACAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGTACTGCTCTTAAGGATAAATTCTCCCATCTCTAAACAACA  979

seq1  AAACAAGACAAAACAAACAGACAAACAAAACTGCCTGAATTTTCTAGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGACAAAACAAACAGACAAACAAAACTGCCTGAATTTTCTAGGTT  1029

seq1  ATGTCTTAGGTTCATGTTCTACCAGGAACATCATTAATGCTCAATAAAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAGGTTCATGTTCTACCAGGAACATCATTAATGCTCAATAAAAG  1079

seq1  TTATTCTCCAATACCTGTAATCATTCTCTGACTGCACTGTTAGAGATAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCCAATACCTGTAATCATTCTCTGACTGCACTGTTAGAGATAGA  1129

seq1  GGGGAATGGTTTGAGTAACTTCTCTTTTTAACCTGAAAAGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGGTTTGAGTAACTTCTCTTTTTAACCTGAAAAGAATTC  1174

seq1: chr15_42320305_42321458
seq2: B6Ng01-138P11.g_69_1212

seq1  GAATTCTTTTAAAGAGACTCTTGTGGGAAGCTTCCATAACTTGTAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAGAGACTCTTGTGGGAAGCTTCCATAACTTGTAATGTG  50

seq1  GATCTCTAGGTAAGGAACTGAGTATATTCCTATTCCTGTGTCCTCTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTAGGTAAGGAACTGAGTATATTCCTATTCCTGTGTCCTCTGTAC  100

seq1  ACCGAGGATATTCCTATCCCTGTGTCCTCTGTACACTGAGGATATTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGATATTCCTATCCCTGTGTCCTCTGTACACTGAGGATATTCTTA  150

seq1  TCCCCATGTCCTCTGTACACTGAGGATATTCATATCCCTGTGTCCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGTCCTCTGTACACTGAGGATATTCATATCCCTGTGTCCTCTGT  200

seq1  ACACTGAGGATATTCCTATTCCTGTGTCCTCTGTACACTGAGGATATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGGATATTCCTATTCCTGTGTCCTCTGTACACTGAGGATATTCC  250

seq1  TATCCCCGTGTCCTCTGTACACTGAGGATATTCCTATCCCTGTGTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCGTGTCCTCTGTACACTGAGGATATTCCTATCCCTGTGTCCTCT  300

seq1  GTACACTGAGGATATTCCTATTCCTGTGTCCTCTGTACACTGAGGATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGAGGATATTCCTATTCCTGTGTCCTCTGTACACTGAGGATATT  350

seq1  CCTATCCCTTGTCCTCTGTACACTGAGGATGTTCCTATTCCTGTGTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCTTGTCCTCTGTACACTGAGGATGTTCCTATTCCTGTGTCCTC  400

seq1  TGTACACTGAGGATATTCCTATCCCTTGTCCTATGTACACTGAGTATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTGAGGATATTCCTATCCCTTGTCCTATGTACACTGAGTATATT  450

seq1  CCTATCCTCATGTCCTCTGTACACTGAGTATATTCCTAACCCCATGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCTCATGTCCTCTGTACACTGAGTATATTCCTAACCCCATGTCCT  500

seq1  CTGCACACTGAGTATATTCCTATCCCCATGTCCTCTGCACACTGAGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACTGAGTATATTCCTATCCCCATGTCCTCTGCACACTGAGGATA  550

seq1  TTCCTATCCCTGTGTCCTCTGTACACTGAGGATATTCCTATCCCCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATCCCTGTGTCCTCTGTACACTGAGGATATTCCTATCCCCATGTC  600

seq1  CTCTGCACACTGAGGATATTCCTATCCCCATGTCCTCTGCACACTGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACACTGAGGATATTCCTATCCCCATGTCCTCTGCACACTGAGTA  650

seq1  TATTCCTATCCCCATGTCCTCTGTACACTGAGGATATTCCTATTCCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTATCCCCATGTCCTCTGTACACTGAGGATATTCCTATTCCTGTG  700

seq1  TCCTCTGTACACTGAGGATATTCCTATCCCATGTCCTCTGTACACTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTACACTGAGGATATTCCTATCCCATGTCCTCTGTACACTGAGG  750

seq1  TTATTCCTATTACTGTGTCCTCTGTGCACTGAGTATATTCCTATCCCCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTATTACTGTGTCCTCTGTGCACTGAGTATATTCCTATCCCCGT  800

seq1  GTCCTCTGTACACTGAGGATATTCCTATCCCCGTGTCCTCTGTACACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGTACACTGAGGATATTCCTATCCCCGTGTCCTCTGTACACTGA  850

seq1  GGATA-TTCCTGTCCGCATGTCTTGTGTACACTAAGTACATTCTTACCCC  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTCCTGTCCGCATGTCTTGTGTACACTAAGTACATTCTTACCCC  900

seq1  TCATATCCTCTGTACACTGAATATATTCCTATCCCTGTGTCCTCTGTACA  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCATATCCTCTGTACACTGAATATATTCCTATCCCTGTGTCTTCTGTACA  950

seq1  CTGAGTATATTCCTATTTCTATATCCTCTGTATATTGAATATATTCCTAT  999
      ||||||||| ||||||||||||||||||||||||||||||||| || |||
seq2  CTGAGTATA-TCCTATTTCTATATCCTCTGTATATTGAATATA-TCTTAT  998

seq1  CCCC-GTGTCCTTTTTACTCATTTTTTGTTTCCTTTCTCTCCT-GTGCAT  1047
      |||| |||||| ||||||||| ||||||||| ||||||||||| ||||||
seq2  CCCCGGTGTCC-TTTTACTCA-TTTTTGTTT-CTTTCTCTCCTGGTGCAT  1045

seq1  TTCCCAACGTAAAACTTTCACCTGTCCTTTGAAATTCAAGTTTTTTTGAA  1097
      |||||||||| ||||||||| |||| ||||| ||||||   ||||| |||
seq2  TTCCCAACGT-AAACTTTCA-CTGT-CTTTGGAATTCA--GTTTTTGGAA  1090

seq1  TGCAG-ATATTCTTCCATCCATGCAAATGAGCTATGCAATTAACTTTGCC  1146
      ||||| |||||||  |||| ||||  ||||||||||||| || |||||||
seq2  TGCAGAATATTCT--CATCTATGC-CATGAGCTATGCAA-TACCTTTGCC  1136

seq1  TATCATAG  1154
      | ||||||
seq2  TTTCATAG  1144