BAC Information

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BAC

Clone NameB6Ng01-139A21
Chromosome15 (Build37)
Map Location 11,215,461 - 11,360,234
singlet/doubletdoublet
Overlap geneAdamts12, Tars
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3
Downstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139A21.bB6Ng01-139A21.g
ACCDH938138DH938139
length2461,059
definitionDH938138|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A21, 5' end.DH938139|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,359,989 - 11,360,234)(11,215,461 - 11,216,524)
sequence
gaattctttgagcagtatatttgcgtacactaagaggtgggatataccat
atttatagaaactttggtcttccatttgggcatggagaacttaacagcag
tgacagaatgatgacacaccagcaaaatgatgtcagtagatacatccaca
gtgaccttataagaggttacgaaaaatcacttagcagtctcaccgctggg
ttttaggtgttttgggttttggtggtggtgatgctagtggtgggtt
gaattctgtggctggctcgtctctttctaattcttcttacttggtgtttc
ttgccccattagccacccaccacgggcactgaaggatggagatgctgagg
taacgatagctgagaagctaacacgcctccttcatcactgtctcttttgt
ccttaggttacgttgacattggacttattcccaaaggtgcgagggatata
agggtgatggaaatcaaggcagctggcaatttcctggccattaggagtga
agatccggaaaaatactacctcaacggagggttcattatccagtggaatg
gaaactataaactggcagggaccgttttccagtatgacaggaaaggagat
ctggagaaacttatagctccaggccccaccaacgagtcagtgtggctcca
ggtaatactgagggaagggaacgggctggtggccagtgtgctcaatactc
ttcttctcctgctggccactgatgttgggaccgagagcctgtgctgtttc
ttctttgttctttagaactgtcggagccccagggcctcgaaaccatccac
tgggaggtttgaatgtagtcctcaggctggtgtattccttatacatttaa
agtgtctccgtgtggcttcccagccgagaatgacaaaatgaagtgatacc
gtgtagtgtatgtgccagtgtgcacatatacccaagctcagtgtcacttg
ggacatttttctcaattgcttgccttgttttacttgacttttctgggaca
agtctttcactaagcctggagcttgcgcattcagttagactggctggcca
gcaaaccccacgcattctcctctctctgtttccttagtgctaggattata
ggtgcacacccccatgcctggttttttacctgggtgcccagcaagcactt
tagcttcttaccatctcccggccactgggtatagctctaaatttctgctt
tacatcgaaactcaggaagactttgacaggactcgtcttcttgaatttta
gctacttttcaggtgactaccctggtatcaagtatggagacaccaggtcg
gaaagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_11359989_11360234
seq2: B6Ng01-139A21.b_41_286 (reverse)

seq1  AACCCACCACTAGCATCACCACCACCAAAACCCAAAACACCTAAAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCACTAGCATCACCACCACCAAAACCCAAAACACCTAAAACCCA  50

seq1  GCGGTGAGACTGCTAAGTGATTTTTCGTAACCTCTTATAAGGTCACTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGAGACTGCTAAGTGATTTTTCGTAACCTCTTATAAGGTCACTGTG  100

seq1  GATGTATCTACTGACATCATTTTGCTGGTGTGTCATCATTCTGTCACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATCTACTGACATCATTTTGCTGGTGTGTCATCATTCTGTCACTGC  150

seq1  TGTTAAGTTCTCCATGCCCAAATGGAAGACCAAAGTTTCTATAAATATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTTCTCCATGCCCAAATGGAAGACCAAAGTTTCTATAAATATGG  200

seq1  TATATCCCACCTCTTAGTGTACGCAAATATACTGCTCAAAGAATTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCACCTCTTAGTGTACGCAAATATACTGCTCAAAGAATTC  246

seq1: chr15_11215461_11216524
seq2: B6Ng01-139A21.g_66_1124

seq1  GAATTCTGTGGCTGGCTCGTCTCTTTCTAATTCTTCTTACTTGGTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCTGGCTCGTCTCTTTCTAATTCTTCTTACTTGGTGTTTC  50

seq1  TTGCCCCATTAGCCACCCACCACGGGCACTGAAGGATGGAGATGCTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCATTAGCCACCCACCACGGGCACTGAAGGATGGAGATGCTGAGG  100

seq1  TAACGATAGCTGAGAAGCTAACACGCCTCCTTCATCACTGTCTCTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGATAGCTGAGAAGCTAACACGCCTCCTTCATCACTGTCTCTTTTGT  150

seq1  CCTTAGGTTACGTTGACATTGGACTTATTCCCAAAGGTGCGAGGGATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGTTACGTTGACATTGGACTTATTCCCAAAGGTGCGAGGGATATA  200

seq1  AGGGTGATGGAAATCAAGGCAGCTGGCAATTTCCTGGCCATTAGGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGATGGAAATCAAGGCAGCTGGCAATTTCCTGGCCATTAGGAGTGA  250

seq1  AGATCCGGAAAAATACTACCTCAACGGAGGGTTCATTATCCAGTGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCGGAAAAATACTACCTCAACGGAGGGTTCATTATCCAGTGGAATG  300

seq1  GAAACTATAAACTGGCAGGGACCGTTTTCCAGTATGACAGGAAAGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATAAACTGGCAGGGACCGTTTTCCAGTATGACAGGAAAGGAGAT  350

seq1  CTGGAGAAACTTATAGCTCCAGGCCCCACCAACGAGTCAGTGTGGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAACTTATAGCTCCAGGCCCCACCAACGAGTCAGTGTGGCTCCA  400

seq1  GGTAATACTGAGGGAAGGGAACGGGCTGGTGGCCAGTGTGCTCAATACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATACTGAGGGAAGGGAACGGGCTGGTGGCCAGTGTGCTCAATACTC  450

seq1  TTCTTCTCCTGCTGGCCACTGATGTTGGGACCGAGAGCCTGTGCTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCCTGCTGGCCACTGATGTTGGGACCGAGAGCCTGTGCTGTTTC  500

seq1  TTCTTTGTTCTTTAGAACTGTCGGAGCCCCAGGGCCTCGAAACCATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTCTTTAGAACTGTCGGAGCCCCAGGGCCTCGAAACCATCCAC  550

seq1  TGGGAGGTTTGAATGTAGTCCTCAGGCTGGTGTATTCCTTATACATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTTTGAATGTAGTCCTCAGGCTGGTGTATTCCTTATACATTTAA  600

seq1  AGTGTCTCCGTGTGGCTTCCCAGCCGAGAATGACAAAATGAAGTGATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCCGTGTGGCTTCCCAGCCGAGAATGACAAAATGAAGTGATACC  650

seq1  GTGTAGTGTATGTGCCAGTGTGCACATATACCCAAGCTCAGTGTCACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTGTATGTGCCAGTGTGCACATATACCCAAGCTCAGTGTCACTTG  700

seq1  GGACATTTTTCTCAATTGCTTGCCTTGTTTTACTTGACTTTTCTGGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTTTCTCAATTGCTTGCCTTGTTTTACTTGACTTTTCTGGGACA  750

seq1  AGTCTTTCACTAAGCCTGGAGCTTGCGCATTCAGTTAGACTGGCTGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCACTAAGCCTGGAGCTTGCGCATTCAGTTAGACTGGCTGGCCA  800

seq1  GCAAACCCCACGCATTCTCCTCTCTCTGTTTCCTTAGTGCTAGGATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCCACGCATTCTCCTCTCTCTGTTTCCTTAGTGCTAGGATTATA  850

seq1  GGTGCACACCCCCATGCCTGGTTTTTTACCTGGGTGCCCAGCAAGCACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACACCCCCATGCCTGGTTTTTTACCTGGGTGCCCAGCAAGCACTT  900

seq1  TAGCTTCTTACCCATCTCCCCGGCCACTGGGTATAGCTCTTAAATGTCTG  950
      |||||||||| |||||| ||||||||||||||||||||| ||||| ||||
seq2  TAGCTTCTTA-CCATCT-CCCGGCCACTGGGTATAGCTC-TAAATTTCTG  947

seq1  CTTTACAATCGATACTCAGGACAGACTTTGACAGGACTCGTC-TCTTGAA  999
      |||||| ||||| |||||||| |||||||||||||||||||| |||||||
seq2  CTTTAC-ATCGAAACTCAGGA-AGACTTTGACAGGACTCGTCTTCTTGAA  995

seq1  TTTTAGCTACTTTTCCAGGTGACTAACCCTGGTATCAAGTATGAGTACA-  1048
      |||||||||||||| ||||||||| ||||||||||||||||||   ||| 
seq2  TTTTAGCTACTTTT-CAGGTGACT-ACCCTGGTATCAAGTATGGAGACAC  1043

seq1  CAGTCCGGAAAGATGG  1064
      |||  |||||||||||
seq2  CAGGTCGGAAAGATGG  1059