BAC Information

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BAC

Clone NameB6Ng01-139J04
Chromosome15 (Build37)
Map Location 40,493,905 - 40,635,647
singlet/doubletdoublet
Overlap geneZfpm2, Ppia-ps25
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872
Downstream geneOxr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139J04.bB6Ng01-139J04.g
ACCDH938522DH938523
length1,1991,156
definitionDH938522|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J04, 5' end.DH938523|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,634,412 - 40,635,647)(40,493,905 - 40,495,062)
sequence
gaattccatcattggcatagatgaagaccaaatttgttttcttgaattga
tgactaaaatgactctgaacatttgggaaaatgacagaaaaaaataataa
acccacatctggaaagattgcatgcaactaaaaatcatcacagtacaaaa
ggatatgcaaaagtctccaaaggaaaaataaatagttgattaacagttac
tttcctatgtttctacagctagaagagaagccaaaggagtaatagaacag
tgtcttcaagacctgtgacacagtcactgacaacagacatttgagagcag
ttacttgaagattctacataaagaaccaaaatatgttttatgcttaatag
aactgaagttctcttacaaaaatgcattccaaagaagattagtaatttat
ctcaaaaacagaaattggaagtgagaggtaagaaagatcagtagccatga
gtgcagagggatatccacaaaacataggagtgcattgaaatacatatttc
tatataacataagccatattacataaacatattagatgaaactaggaaac
aattgatataaaatatctgaaaagaaaagaaaagcaaaatttctagggtg
ctgcgggggtctgtgttattctaaagtctttgaagactttgaagaaagac
tttaaattactaaagtagtaattttctaggaaagtgtcttgtttgtactc
cacaccatcacctaacaatacagaaaggaaaatttcagtgacggatacaa
gtttgaaaaattcattctttcagtgagttattcagacttttttgtcaaag
ttggtaagtgaagcagtgaaagagtagaggatcagaagaggagataaaaa
ctctatactggagattgcagtaaacaattagataatacagcccattccag
tattcatgaatattgaaaattgcttctctcctcaaagccagcacatgggc
tctgaggacacatctttcccatgatctgtgacagtaatagttttgttgtg
ataatgtgatagtcagaatctctcatgttcaggactactttccactcgca
caaaataaatatgctagtcagtcctcaggaggttaaatgatgtaagttca
tttattgaagtcttctttaggagttgaactaatgcctacttacctacgaa
caatcttacattacctcagcattactgtgaactgagttctattccacct
gaattccaatcacaagggataggtaagatttaaatattaatgcctagagg
cttgcctgagagggtgttgcaccaccactgtcagcctgtctgcttgaggt
aacaaaagctagaggcttgtctagtcagaattattcaaagctttagcaat
atgtgtctttgagaagtactttttaaatgaatatatggcaattattaggc
aggatgagtttgggtcaagatttcctatgtgaaaacgaaagacaattact
gtagcttcttcaacccttcctctctgctcttaatatgatgcccaccacat
cataacagtaccatcaagagcagctttccctcacgactagcataagatag
tatgtccaggctctaatgcaggagagatttgctgtgggttttcaaatcag
aggaagggatttatctgggaatatttttaacattagcaaatatttattct
taataaagaaaggtctgaacagtgagccgaaaagattagtgtccttaaaa
aaaattagtgaaccatgggtccccaaaactatgaaataaaatgcatgcta
tcttactaagaatattaaaatatgtcaattatttacaatgaaatttttga
aaaaaaaattctgaccattgttaatttttgtgatttatgtgttgaagaaa
agggaattcagtgaagagaccttaggttttgaagcagtccctgggatgct
caaaactattaagattatgggcacaaaattagtttacatctgagaatgta
ggaaaattatatacaaatcttatgaccatggaaagtataaaaacaaacct
ttagggcctaatagctacaaactttaccacagtatcaatcattccaggca
ttgctctcataaaacttaaaatccacacgcttttaatagattacaaggta
atattagtttatttaatattctgataatatcctatatatattaatatata
tatattattaatatttatatatataatgcaaaaccaatgtcattactagc
ataatgtttaatataaaataatgctttatttcatttgatcttttgccacc
tactacttacttctttgctttattttatttagtgggaaatggttccccct
aaacctgcctagaggaaggttgaatgaattttaactgtttgccttagcag
gatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40634412_40635647
seq2: B6Ng01-139J04.b_43_1241 (reverse)

seq1  AGGTGTGGGAAATAGAACTCAGTATCAACCAGTAAAATGACCTTTGTAGT  50
      ||||    | ||||||||||||| |||  ||||  ||||     ||  ||
seq2  AGGT----GGAATAGAACTCAGT-TCA--CAGT--AATG----CTGAGGT  37

seq1  TACATTGTGTAAGGATTGGTTTTAAGTAGGTAGGTAAGCATGTAGTTTCT  100
       |     ||||| |||||    |  ||||||| ||| |||| ||| ||| 
seq2  AA-----TGTAA-GATTG----TTCGTAGGTAAGTAGGCAT-TAG-TTCA  75

seq1  ACTCCTAAAGAAGGCTTCAATACATTGGACTTTACATTGGTTTTAACCCT  150
      ||||||||||||| |||||||| ||  ||  ||||||    ||||| |||
seq2  ACTCCTAAAGAAGACTTCAATAAAT--GAACTTACAT--CATTTAA-CCT  120

seq1  CCTGAGACCTGACTAGCATA-TTATTTTGTGCGAGTTGGGAAAGTAGTCC  199
      ||||||  |||||||||||| |||||||||||||||  ||||||||||||
seq2  CCTGAGGACTGACTAGCATATTTATTTTGTGCGAGT--GGAAAGTAGTCC  168

seq1  TGGAACATGAAGAGATTCTGACTTATCACATTATCACAAACAAAAACTAT  249
      | ||||||| |||||||||||| ||||||||||||||||   ||||||| 
seq2  T-GAACATG-AGAGATTCTGAC-TATCACATTATCACAA--CAAAACTA-  212

seq1  TTACTGTCACAGATCATGGGAAAGATGTGTCCTCAGAGCCCATGTGCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCACAGATCATGGGAAAGATGTGTCCTCAGAGCCCATGTGCTGG  262

seq1  CTTTGAGGAGAGAAGCAATTTTCAATATTCATGAATACTGGAATTGGCTG  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTGAGGAGAGAAGCAATTTTCAATATTCATGAATACTGGAATGGGCTG  312

seq1  TATTATCTAATTGTTTACTGCAATCTCCAGTATAGAGTTTTTATCTCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTAATTGTTTACTGCAATCTCCAGTATAGAGTTTTTATCTCCTC  362

seq1  TTCTGATCCTCTACTCTTTCACTGCTTCACTTACCAACTTTGACAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCCTCTACTCTTTCACTGCTTCACTTACCAACTTTGACAAAAAA  412

seq1  GTCTGAATAACTCACTGAAAGAATGAATTTTTCAAACTTGTATCCGTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATAACTCACTGAAAGAATGAATTTTTCAAACTTGTATCCGTCAC  462

seq1  TGAAATTTTCCTTTCTGTATTGTTAGGTGATGGTGTGGAGTACAAACAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTTCCTTTCTGTATTGTTAGGTGATGGTGTGGAGTACAAACAAG  512

seq1  ACACTTTCCTAGAAAATTACTACTTTAGTAATTTAAAGTCTTTCTTCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCCTAGAAAATTACTACTTTAGTAATTTAAAGTCTTTCTTCAAA  562

seq1  GTCTTCAAAGACTTTAGAATAACACAGACCCCCGCAGCACCCTAGAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAAGACTTTAGAATAACACAGACCCCCGCAGCACCCTAGAAATT  612

seq1  TTGCTTTTCTTTTCTTTTCAGATATTTTATATCAATTGTTTCCTAGTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCTTTTCTTTTCAGATATTTTATATCAATTGTTTCCTAGTTTC  662

seq1  ATCTAATATGTTTATGTAATATGGCTTATGTTATATAGAAATATGTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATATGTTTATGTAATATGGCTTATGTTATATAGAAATATGTATTT  712

seq1  CAATGCACTCCTATGTTTTGTGGATATCCCTCTGCACTCATGGCTACTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCACTCCTATGTTTTGTGGATATCCCTCTGCACTCATGGCTACTGA  762

seq1  TCTTTCTTACCTCTCACTTCCAATTTCTGTTTTTGAGATAAATTACTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTACCTCTCACTTCCAATTTCTGTTTTTGAGATAAATTACTAAT  812

seq1  CTTCTTTGGAATGCATTTTTGTAAGAGAACTTCAGTTCTATTAAGCATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGGAATGCATTTTTGTAAGAGAACTTCAGTTCTATTAAGCATAA  862

seq1  AACATATTTTGGTTCTTTATGTAGAATCTTCAAGTAACTGCTCTCAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTTTGGTTCTTTATGTAGAATCTTCAAGTAACTGCTCTCAAATG  912

seq1  TCTGTTGTCAGTGACTGTGTCACAGGTCTTGAAGACACTGTTCTATTACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTCAGTGACTGTGTCACAGGTCTTGAAGACACTGTTCTATTACT  962

seq1  CCTTTGGCTTCTCTTCTAGCTGTAGAAACATAGGAAAGTAACTGTTAATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCTTCTCTTCTAGCTGTAGAAACATAGGAAAGTAACTGTTAATC  1012

seq1  AACTATTTATTTTTCCTTTGGAGACTTTTGCATATCCTTTTGTACTGTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTATTTTTCCTTTGGAGACTTTTGCATATCCTTTTGTACTGTGA  1062

seq1  TGATTTTTAGTTGCATGCAATCTTTCCAGATGTGGGTTTATTATTTTTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAGTTGCATGCAATCTTTCCAGATGTGGGTTTATTATTTTTTT  1112

seq1  CTGTCATTTTCCCAAATGTTCAGAGTCATTTTAGTCATCAATTCAAGAAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTTTCCCAAATGTTCAGAGTCATTTTAGTCATCAATTCAAGAAA  1162

seq1  ACAAATTTGGTCTTCATCTATGCCAATGATGGAATTC  1236
      |||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTGGTCTTCATCTATGCCAATGATGGAATTC  1199

seq1: chr15_40493905_40495062
seq2: B6Ng01-139J04.g_67_1222

seq1  GAATTCCAATCACAAGGGATAGGTAAGATTTAAATATTAATGCCTAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCACAAGGGATAGGTAAGATTTAAATATTAATGCCTAGAGG  50

seq1  CTTGCCTGAGAGGGTGTTGCACCACCACTGTCAGCCTGTCTGCTTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGAGAGGGTGTTGCACCACCACTGTCAGCCTGTCTGCTTGAGGT  100

seq1  AACAAAAGCTAGAGGCTTGTCTAGTCAGAATTATTCAAAGCTTTAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCTAGAGGCTTGTCTAGTCAGAATTATTCAAAGCTTTAGCAAT  150

seq1  ATGTGTCTTTGAGAAGTACTTTTTAAATGAATATATGGCAATTATTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTTGAGAAGTACTTTTTAAATGAATATATGGCAATTATTAGGC  200

seq1  AGGATGAGTTTGGGTCAAGATTTCCTATGTGAAAACGAAAGACAATTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGTTTGGGTCAAGATTTCCTATGTGAAAACGAAAGACAATTACT  250

seq1  GTAGCTTCTTCAACCCTTCCTCTCTGCTCTTAATATGATGCCCACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTCTTCAACCCTTCCTCTCTGCTCTTAATATGATGCCCACCACAT  300

seq1  CATAACAGTACCATCAAGAGCAGCTTTCCCTCACGACTAGCATAAGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGTACCATCAAGAGCAGCTTTCCCTCACGACTAGCATAAGATAG  350

seq1  TATGTCCAGGCTCTAATGCAGGAGAGATTTGCTGTGGGTTTTCAAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAGGCTCTAATGCAGGAGAGATTTGCTGTGGGTTTTCAAATCAG  400

seq1  AGGAAGGGATTTATCTGGGAATATTTTTAACATTAGCAAATATTTATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGATTTATCTGGGAATATTTTTAACATTAGCAAATATTTATTCT  450

seq1  TAATAAAGAAAGGTCTGAACAGTGAGCCGAAAAGATTAGTGTCCTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGAAAGGTCTGAACAGTGAGCCGAAAAGATTAGTGTCCTTAAAA  500

seq1  AAAATTAGTGAACCATGGGTCCCCAAAACTATGAAATAAAATGCATGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGTGAACCATGGGTCCCCAAAACTATGAAATAAAATGCATGCTA  550

seq1  TCTTACTAAGAATATTAAAATATGTCAATTATTTACAATGAAATTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTAAGAATATTAAAATATGTCAATTATTTACAATGAAATTTTTGA  600

seq1  AAAAAAAATTCTGACCATTGTTAATTTTTGTGATTTATGTGTTGAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTCTGACCATTGTTAATTTTTGTGATTTATGTGTTGAAGAAA  650

seq1  AGGGAATTCAGTGAAGAGACCTTAGGTTTTGAAGCAGTCCCTGGGATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTCAGTGAAGAGACCTTAGGTTTTGAAGCAGTCCCTGGGATGCT  700

seq1  CAAAACTATTAAGATTATGGGCACAAAATTAGTTTACATCTGAGAATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTATTAAGATTATGGGCACAAAATTAGTTTACATCTGAGAATGTA  750

seq1  GGAAAATTATATACAAATCTTATGACCATGGAAAGTATAAAAACAAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTATATACAAATCTTATGACCATGGAAAGTATAAAAACAAACCT  800

seq1  TTAGGGCCTAATAGCTACAAACTTTACCACAGTATCAATCATTCCAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCCTAATAGCTACAAACTTTACCACAGTATCAATCATTCCAGGCA  850

seq1  TTGCTCTCATAAAACTTAAAATCCACACGCTTTTAATAGATTACAAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCATAAAACTTAAAATCCACACGCTTTTAATAGATTACAAGGTA  900

seq1  ATATTAGTTTTATTTAATATTCTGATAATATCCTATATATATTAATATAT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATTAG-TTTATTTAATATTCTGATAATATCCTATATATATTAATATA-  948

seq1  TATATATTATTAATATTTATATATATAATGCAAACACAATGTCATTACTA  1000
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TATATATTATTAATATTTATATATATAATGCAAAACCAATGTCATTACTA  998

seq1  GCATAATGTTTAATATAAAATAATGCTTTATTTCATCTGATCTTTTGCCA  1050
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCATAATGTTTAATATAAAATAATGCTTTATTTCATTTGATCTTTTGCCA  1048

seq1  CCTACTACTTACTTCTATGCTTATTTTTATTTAGTTGTGAATATGTTCCC  1100
      |||||||||||||||| |||||  |||||||||| || ||| ||| | ||
seq2  CCTACTACTTACTTCTTTGCTTTATTTTATTTAG-TGGGAA-ATGGTTCC  1096

seq1  TCTTTAAACTG-CTAGAGG-ATGTTGAATG-ATTTTAACTTGTTTGCATA  1147
       | | || ||| ||||||| | |||||||| |||||||| ||||||| | 
seq2  CCCTAAACCTGCCTAGAGGAAGGTTGAATGAATTTTAAC-TGTTTGCCTT  1145

seq1  AGCAGGATTTT  1158
      |||||||||||
seq2  AGCAGGATTTT  1156