BAC Information

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BAC

Clone NameB6Ng01-140E17
Chromosome15 (Build37)
Map Location 96,190,359 - 96,191,521
singlet/doubletsinglet
Overlap geneArid2
Upstream geneNell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894
Downstream geneSfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140E17.bB6Ng01-140E17.g
ACCDH939064DH939065
length1,131408
definitionDH939064|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E17, 5' end.DH939065|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatataatcacagtgtctctctgtacaggaatttctgacacata
agtgtatattggtggggtagatgtttaagttgctttccattactggccga
ctatctttgaactgtaagcagaaagttaggagtcaaacctacaaactgtc
caagtctttttaaggctaagaacaaagcttttccctgctgtatcttacaa
aactccagtgtgtcaatgcctgggagtggaactgaagtgggacagtggga
gtgaccatgcttccactgcagaatgagacgcacacatcaagataaccggc
tctgtggaatttggagttagcagtataaacaaatgttcccagcctgcact
aggccactgagcgtctatggcacacatgcaaagacttatggtatttggca
aaaattggaaagaactaagtttttaaacaaacacgatgttcaatagccag
tgaaaaaaggcagcaagtacagtaaatagtaaagatgcagatgtggaagt
cagactgatcatggataggaggccaaagaaataaaaaattggacattttg
gcaaagaagtggaaaactaagagaaattctagaactaaaatataatccca
gagtttaaagattcaagggatggattcaactaacaatagtcaaaatcaaa
aatagcaagtttgaagtataaagaaacaagaagatgatcggaaacaaggc
ccataagaagctgtaccccagcgggaggcaagtgagatcaaagcaggctg
gctgatcagggcagagggctttctaaataaaccaagtgctaacccacaga
attaagaatcaaaaattaaataaaatcccttgaagaaagacaaagagaga
aaccataaacacagatagaaaaaaaagatagagaacctaaaatgacagct
tactggtaaagacactggctgctcttcacaagaatcaggtcagttcccag
cacaacatggtgctcccaccatgacgcctggtctcagtcttgcacttctc
ctggccgtctagcaatacgcttttacaatgaattccattaaaaaatttac
tttaatcctactccaatggaagaaaaatcaatgattgctcacctgaaaag
aaaaactggacaaaataccgtccctatgaag
attaggggtggggggcttgctgagggaagtttatcactgagggcaggctt
ggaggctgcacagcctggctacacttcctcttttcctctttctctgcgtc
tctgtgcctctctgtctcgcttcctccctctctctctctctctctctctc
tctctctctctctctctctctccctccctgtctgagtgtgtccccacacg
atgagaaactgtatctgaagggctgatggggaagaaagaaaaataaaaaa
aatgaaaaaattacacacaaataatctttttttttgttacactgctagcc
ttggttagaaaattatctacattttaataaactaaaactcagaataatat
gagataaatgataaatacggtgtgattatttctttgggggggggggcaca
gaatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_96190359_96191521
seq2: B6Ng01-140E17.b_46_1176 (reverse)

seq1  CTTCATTAGGGACGGTATTTTTGTCAAGTTTTTATCTTCTCAAGATGAGA  50
      ||||| ||||||||||| ||||||| ||||||| | |||   || |||| 
seq2  CTTCA-TAGGGACGGTA-TTTTGTCCAGTTTTTCTTTTC---AGGTGAG-  44

seq1  CAATCATTTGATTTTTTTTTTCATTTGTAGTTAGATTTTTAAGTTTATAT  100
      |||||| ||||  ||||| |||  ||| |||  ||  || ||||    | 
seq2  CAATCA-TTGA--TTTTTCTTCCATTGGAGTAGGA--TTAAAGT---AAA  86

seq1  TTTTTTAATTGAGATTCATTTTTGTGAATATGCGTATTTGCTGTGACGGC  150
      ||||||||| || ||||||     || | | ||||| |||||  ||||||
seq2  TTTTTTAATGGA-ATTCAT-----TGTAAAAGCGTA-TTGCT-AGACGGC  128

seq1  CAGGAGAAGGTGCCAGACCTGAGACCA-GCGTCATGGTTGTGAGCCACCA  199
      |||||||| |||| ||| ||||||||| ||||||||| || ||| |||||
seq2  CAGGAGAA-GTGCAAGA-CTGAGACCAGGCGTCATGG-TGGGAG-CACCA  174

seq1  TGTTGGTGCTGGGAACTGAACCTGAATCTTGTGGAAGAGCAGCCAGTGTT  249
      |||| ||||||||||||| |||||| |||||| ||||||||||||||| |
seq2  TGTT-GTGCTGGGAACTG-ACCTGATTCTTGT-GAAGAGCAGCCAGTG-T  220

seq1  CTTTACCAGTAAGCTGTCATTTTAGGTTCTCTATCCTTTTTTTTTCTATC  299
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  CTTTACCAGTAAGCTGTCATTTTAGGTTCTCTATC--TTTTTTTTCTATC  268

seq1  TGTGTTTATGGTTTCTCTCTTTGTCTTTCTTCAAGGGATTTTATTTAATT  349
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTGTTTATGGTTTCTCTCTTTGTCTTTCTTCAAGGGATTTTATTTAA-T  317

seq1  TTTTGATTCTTAATTCTGTGGGTTAGCACTTGGTTTATTTAGAAAGCCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTCTTAATTCTGTGGGTTAGCACTTGGTTTATTTAGAAAGCCCT  367

seq1  CTGCCCTGATCAGCCAGCCTGCTTTGATCTCACTTGCCTCCCGCTGGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGATCAGCCAGCCTGCTTTGATCTCACTTGCCTCCCGCTGGGGT  417

seq1  ACAGCTTCTTATGGGCCTTGTTTCCGATCATCTTCTTGTTTCTTTATACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCTTATGGGCCTTGTTTCCGATCATCTTCTTGTTTCTTTATACT  467

seq1  TCAAACTTGCTATTTTTGATTTTGACTATTGTTAGTTGAATCCATCCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTGCTATTTTTGATTTTGACTATTGTTAGTTGAATCCATCCCTT  517

seq1  GAATCTTTAAACTCTGGGATTATATTTTAGTTCTAGAATTTCTCTTAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTAAACTCTGGGATTATATTTTAGTTCTAGAATTTCTCTTAGTT  567

seq1  TTCCACTTCTTTGCCAAAATGTCCAATTTTTTATTTCTTTGGCCTCCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTCTTTGCCAAAATGTCCAATTTTTTATTTCTTTGGCCTCCTAT  617

seq1  CCATGATCAGTCTGACTTCCACATCTGCATCTTTACTATTTACTGTACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCAGTCTGACTTCCACATCTGCATCTTTACTATTTACTGTACTT  667

seq1  GCTGCCTTTTTTCACTGGCTATTGAACATCGTGTTTGTTTAAAAACTTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTTTTTCACTGGCTATTGAACATCGTGTTTGTTTAAAAACTTAG  717

seq1  TTCTTTCCAATTTTTGCCAAATACCATAAGTCTTTGCATGTGTGCCATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCAATTTTTGCCAAATACCATAAGTCTTTGCATGTGTGCCATAG  767

seq1  ACGCTCAGTGGCCTAGTGCAGGCTGGGAACATTTGTTTATACTGCTAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCAGTGGCCTAGTGCAGGCTGGGAACATTTGTTTATACTGCTAACT  817

seq1  CCAAATTCCACAGAGCCGGTTATCTTGATGTGTGCGTCTCATTCTGCAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCCACAGAGCCGGTTATCTTGATGTGTGCGTCTCATTCTGCAGT  867

seq1  GGAAGCATGGTCACTCCCACTGTCCCACTTCAGTTCCACTCCCAGGCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATGGTCACTCCCACTGTCCCACTTCAGTTCCACTCCCAGGCATT  917

seq1  GACACACTGGAGTTTTGTAAGATACAGCAGGGAAAAGCTTTGTTCTTAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTGGAGTTTTGTAAGATACAGCAGGGAAAAGCTTTGTTCTTAGC  967

seq1  CTTAAAAAGACTTGGACAGTTTGTAGGTTTGACTCCTAACTTTCTGCTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGACTTGGACAGTTTGTAGGTTTGACTCCTAACTTTCTGCTTA  1017

seq1  CAGTTCAAAGATAGTCGGCCAGTAATGGAAAGCAACTTAAACATCTACCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAAGATAGTCGGCCAGTAATGGAAAGCAACTTAAACATCTACCC  1067

seq1  CACCAATATACACTTATGTGTCAGAAATTCCTGTACAGAGAGACACTGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATATACACTTATGTGTCAGAAATTCCTGTACAGAGAGACACTGTG  1117

seq1  ATTATATGGAATTC  1163
      ||||||||||||||
seq2  ATTATATGGAATTC  1131