BAC Information

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BAC

Clone NameB6Ng01-141C01
Chromosome15 (Build37)
Map Location 36,521,820 - 36,725,210
singlet/doubletdoublet
Overlap genePabpc1, LOC626746, Ywhaz
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik
Downstream geneZfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141C01.bB6Ng01-141C01.g
ACCDH939667DH939668
length5101,064
definitionDH939667|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C01, 5' end.DH939668|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,724,695 - 36,725,210)(36,521,820 - 36,522,890)
sequence
ttctcagttgaccttccatggcaaatctaattctggcccccttgcagcct
tattatgcctttattaggcaaacatgttgattggagtttgtaaaaactaa
aagcaccttttggtttattaaaacacaaagaaaccttgctagttaatgca
caaggcaaaagcccaaactattttccaaaacaagtctgcaatttatgcag
agaaatctcttaactttccctgaggtgtatattccatatagacgtgtatt
acagacattaacagacatttccattttacaaaagatttaacctagtatct
tctgtcaaatttctagcacctactacaaaactgcaaacataaaagctttt
gaaatagtcattttaagtgagtcactccctgaaagaatttacattacagc
caaagtaagttgacttcagtatcttggagataaaacctgaattaatttgc
tcatctgcttagcatgttatctgttgctgtggaaaccggtgtgtgtgttg
ggagggggga
gaattccatcagcaatcataaacatctattaatgtgttctatcaatggac
atgtttatgtaatatacaaatcccttgactacagaaggaatgctaatttg
aggttaatactccacgctacctaagttttcctggactattgtcagcttgt
atgttttcctacccttttagagggtacaaacttgcccaaacgtgcacaca
caacctacagcaggtaagccacatcaacaacacagcacttgaaaccaggc
atagtcacagccacatctgaaaggtatccaaggggcaggagtgagaaggt
ggcagtgcagataggttctagttgcatcagagtaaacataaaggcctggt
ttgactgtgcaggcttattccatggtctcctccactagcctagaagaacc
agacagtgcactgctggacttggcttccatcagagttggaacacgttcat
taacctgttctaaattgaggctcgccataagtgcatagcctggaccctca
ctttatctcaagagtaagaaattcaaagtacatagtatctcacaggaggt
tgacctaagctggagcaaaaggagtaatggcacgttgcatcctgggaaca
aagcacattaacctcacttttacctgtgtgagcacatgcagaaatggaaa
gtctagtttccagttggcccttacacagttccacttcagcatatcagttg
tcttcactgctatccagctcaaaatctatcgtgaagctatgcaagtttaa
agtcataatcaaaaaagtaaattagacaaaaatgatagcttctggatata
ctgtcaacacccttggtgtttccagtcaccctcaattctcaataagcaaa
aactgttcaaggggaactgggttaagtttaagacatctttaatgttatca
catagaactcctagccaacagcacttgcacactatgttgcaagtctcctg
ttcaaacttacattacgcccattctctggaaggcatgtcattctttctac
tgctggttaaatgacttggtctgggagctggagaaggcttggtggctaga
agcagtatctgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_36724695_36725210
seq2: B6Ng01-141C01.b_49_564 (reverse)

seq1  TCCCCCCTCCCAACACACACACCGGTTTCCACAGCAACAGATAACATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCCCAACACACACACCGGTTTCCACAGCAACAGATAACATGCT  50

seq1  AAGCAGATGAGCAAATTAATTCAGGTTTTATCTCCAAGATACTGAAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGAGCAAATTAATTCAGGTTTTATCTCCAAGATACTGAAGTCA  100

seq1  ACTTACTTTGGCTGTAATGTAAATTCTTTCAGGGAGTGACTCACTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTTGGCTGTAATGTAAATTCTTTCAGGGAGTGACTCACTTAAAA  150

seq1  TGACTATTTCAAAAGCTTTTATGTTTGCAGTTTTGTAGTAGGTGCTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATTTCAAAAGCTTTTATGTTTGCAGTTTTGTAGTAGGTGCTAGAA  200

seq1  ATTTGACAGAAGATACTAGGTTAAATCTTTTGTAAAATGGAAATGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACAGAAGATACTAGGTTAAATCTTTTGTAAAATGGAAATGTCTGT  250

seq1  TAATGTCTGTAATACACGTCTATATGGAATATACACCTCAGGGAAAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTGTAATACACGTCTATATGGAATATACACCTCAGGGAAAGTTA  300

seq1  AGAGATTTCTCTGCATAAATTGCAGACTTGTTTTGGAAAATAGTTTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTCTCTGCATAAATTGCAGACTTGTTTTGGAAAATAGTTTGGGC  350

seq1  TTTTGCCTTGTGCATTAACTAGCAAGGTTTCTTTGTGTTTTAATAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTTGTGCATTAACTAGCAAGGTTTCTTTGTGTTTTAATAAACCA  400

seq1  AAAGGTGCTTTTAGTTTTTACAAACTCCAATCAACATGTTTGCCTAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCTTTTAGTTTTTACAAACTCCAATCAACATGTTTGCCTAATAA  450

seq1  AGGCATAATAAGGCTGCAAGGGGGCCAGAATTAGATTTGCCATGGAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAATAAGGCTGCAAGGGGGCCAGAATTAGATTTGCCATGGAAGGT  500

seq1  CAACTGAGAAGAATTC  516
      ||||||||||||||||
seq2  CAACTGAGAAGAATTC  516

seq1: chr15_36521820_36522890
seq2: B6Ng01-141C01.g_67_1130

seq1  GAATTCCATCAGCAATCATAAACATCTATTAATGTGTTCTATCAATGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGCAATCATAAACATCTATTAATGTGTTCTATCAATGGAC  50

seq1  ATGTTTATGTAATATACAAATCCCTTGACTACAGAAGGAATGCTAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGTAATATACAAATCCCTTGACTACAGAAGGAATGCTAATTTG  100

seq1  AGGTTAATACTCCACGCTACCTAAGTTTTCCTGGACTATTGTCAGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATACTCCACGCTACCTAAGTTTTCCTGGACTATTGTCAGCTTGT  150

seq1  ATGTTTTCCTACCCTTTTAGAGGGTACAAACTTGCCCAAACGTGCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCCTACCCTTTTAGAGGGTACAAACTTGCCCAAACGTGCACACA  200

seq1  CAACCTACAGCAGGTAAGCCACATCAACAACACAGCACTTGAAACCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACAGCAGGTAAGCCACATCAACAACACAGCACTTGAAACCAGGC  250

seq1  ATAGTCACAGCCACATCTGAAAGGTATCCAAGGGGCAGGAGTGAGAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACAGCCACATCTGAAAGGTATCCAAGGGGCAGGAGTGAGAAGGT  300

seq1  GGCAGTGCAGATAGGTTCTAGTTGCATCAGAGTAAACATAAAGGCCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGCAGATAGGTTCTAGTTGCATCAGAGTAAACATAAAGGCCTGGT  350

seq1  TTGACTGTGCAGGCTTATTCCATGGTCTCCTCCACTAGCCTAGAAGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGTGCAGGCTTATTCCATGGTCTCCTCCACTAGCCTAGAAGAACC  400

seq1  AGACAGTGCACTGCTGGACTTGGCTTCCATCAGAGTTGGAACACGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGCACTGCTGGACTTGGCTTCCATCAGAGTTGGAACACGTTCAT  450

seq1  TAACCTGTTCTAAATTGAGGCTCGCCATAAGTGCATAGCCTGGACCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTTCTAAATTGAGGCTCGCCATAAGTGCATAGCCTGGACCCTCA  500

seq1  CTTTATCTCAAGAGTAAGAAATTCAAAGTACATAGTATCTCACAGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTCAAGAGTAAGAAATTCAAAGTACATAGTATCTCACAGGAGGT  550

seq1  TGACCTAAGCTGGAGCAAAAGGAGTAATGGCACGTTGCATCCTGGGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAGCTGGAGCAAAAGGAGTAATGGCACGTTGCATCCTGGGAACA  600

seq1  AAGCACATTAACCTCACTTTTACCTGTGTGAGCACATGCAGAAATGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTAACCTCACTTTTACCTGTGTGAGCACATGCAGAAATGGAAA  650

seq1  GTCTAGTTTCCAGTTGGCCCTTACACAGTTCCACTTCAGCATATCAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTTTCCAGTTGGCCCTTACACAGTTCCACTTCAGCATATCAGTTG  700

seq1  TCTTCACTGCTATCCAGCTCAAAATCTATCGTGAAGCTATGCAAGTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTGCTATCCAGCTCAAAATCTATCGTGAAGCTATGCAAGTTTAA  750

seq1  AGTCATAATCAAAAAAGTAAATTAGACAAAAATGATAGCTTCTGGATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAATCAAAAAAGTAAATTAGACAAAAATGATAGCTTCTGGATATA  800

seq1  CTGTCAACACCCTTGGTGTTTCCAAGTCACCCTCAATTCTCAATAAGCAA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGTCAACACCCTTGGTGTTTCC-AGTCACCCTCAATTCTCAATAAGCAA  849

seq1  AAACTGTTCCAAGGGGAAACTGGTTAAGTTTAAGACATCTTTAATGTTAT  900
      |||||||| |||||||||   |||||||||||||||||||||||||||||
seq2  AAACTGTT-CAAGGGGAACTGGGTTAAGTTTAAGACATCTTTAATGTTAT  898

seq1  CAACATAGAACTCCTAGCCAACAGCACTGCAACACTATGTTGCAAGTCTC  950
      | ||||||||||||||||||||||||||   |||||||||||||||||||
seq2  C-ACATAGAACTCCTAGCCAACAGCACTTGCACACTATGTTGCAAGTCTC  947

seq1  CTGTCCAAACTTACATTACGCCCATTTCTCTGAAGGGCATGTCATTCTTC  1000
      |||| ||||||||||||||||||| ||||||| | |||||||||||||| 
seq2  CTGTTCAAACTTACATTACGCCCA-TTCTCTGGAAGGCATGTCATTCTTT  996

seq1  CTACTGCTTGTTAAAATGACTTGTCTTGGGAGCTGGAGAAGGGGCTTGGT  1050
      |||||||| ||| ||||||||||   ||||||||||||||  ||||||||
seq2  CTACTGCTGGTT-AAATGACTTGGTCTGGGAGCTGGAGAA--GGCTTGGT  1043

seq1  GGCTAAGAGCAGTTACTGCTC  1071
      |||||  ||||||  ||||||
seq2  GGCTAGAAGCAGTATCTGCTC  1064