BAC Information

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BAC

Clone NameB6Ng01-141N18
Chromosome15 (Build37)
Map Location 100,289,014 - 100,483,178
singlet/doubletdoublet
Overlap geneLetmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2
Upstream gene4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneEla1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N18.bB6Ng01-141N18.g
ACCDH940206DH940207
length552937
definitionDH940206|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N18, 5' end.DH940207|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,482,627 - 100,483,178)(100,289,014 - 100,289,951)
sequence
gaattctcaaggttgcttccctggaagccaaacaagtttacaataggctt
gtaggaaattttaactcagtacaggtttctctagctgagaacccctgttt
tcctgagatcacgagggaccctggagctcaagagtttattagaaggtcag
tttcggtggtaaagtccaagaatctggtgtctttgcttggtcctctgtta
cacaccctggccactggaaagcctcatctgcaccctttctcaccaccctg
gttaggagaggattgccaagcggggccggaaactggtagactacgatagt
gcccgccatcacctggaggccgtgcagaatgctaagaagaaggatgacgc
caagatggctaaggtcagaacagtcagacggcctctcccctgcccggagt
ggacaggcatctgggctaagacaagtccaggaactatgggcttctgggtc
gtcttcccctgtaacagtaagggcagcccacatcctgcagctgaggagga
ggaggaggaggacatgagtctggacagggggaggagacagggagagggtg
ga
gaattcagttctgcacacttgcccaagaaacaaccaactaaataaacttg
ctagccttccattatctttaagcattctcagtgctttaacttattatttt
gtgtgcacggatgttttgtgtgtctgtgtagcgtgtgcatgcagggtctg
tggaggctgatagagggcgttgggttccatggaattggagttgcagacag
ctgtgagctgccatgtggttgctgggaactgaacttgggtcctctggaag
aacagccagtgttcctaacctctgagccatctctctaaaattatttgtta
ttgtgattgtgtttgtgtgtgtgtgcatataagtgcatggacactcggaa
gattaaagcagggaggtcatgagttcaaggctattccaggctatatagca
agttctagtccagcctgggctactcactgagaactgtcagggaaacaaag
gataggtcatggtggctcacacctatgattctagtacctgggggctgaga
taggaggattgccacctgtttgaagccaacctggacttcacctgtgttgc
aggcttatgaagctgcagagcgaaactttgtctaaaagcaaaacaagccg
gacgtggtggtgcatgccttgaatcccagcacttgggaggcagaggcagg
caaacttctgaattggaggccagcctggtctacagagtgaatttccagga
cagccagggctacacagagaaatcctgtctcgaaaaactgaaaaacaaac
aaacaaacaaaagcaaagcaaaacaaatcttcacaattctaaccaaaaac
accaaaattctgaaaaaaaaaaaatgaaccaaaggagaaagtgaaatgat
ttaggtaactcagtttctgtcccaacgtggagtcttgccgctcagccttg
ggtgagacattcagtgaatccctagccttagctaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100482627_100483178
seq2: B6Ng01-141N18.b_47_598 (reverse)

seq1  TCCACCCTCTCCCTGTCTCCTCCCCCTGTCCAGACTCATGTCCTCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTCTCCCTGTCTCCTCCCCCTGTCCAGACTCATGTCCTCCTCCT  50

seq1  CCTCCTCCTCAGCTGCAGGATGTGGGCTGCCCTTACTGTTACAGGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTCAGCTGCAGGATGTGGGCTGCCCTTACTGTTACAGGGGAAG  100

seq1  ACGACCCAGAAGCCCATAGTTCCTGGACTTGTCTTAGCCCAGATGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCCAGAAGCCCATAGTTCCTGGACTTGTCTTAGCCCAGATGCCTGT  150

seq1  CCACTCCGGGCAGGGGAGAGGCCGTCTGACTGTTCTGACCTTAGCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCGGGCAGGGGAGAGGCCGTCTGACTGTTCTGACCTTAGCCATCT  200

seq1  TGGCGTCATCCTTCTTCTTAGCATTCTGCACGGCCTCCAGGTGATGGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCATCCTTCTTCTTAGCATTCTGCACGGCCTCCAGGTGATGGCGG  250

seq1  GCACTATCGTAGTCTACCAGTTTCCGGCCCCGCTTGGCAATCCTCTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATCGTAGTCTACCAGTTTCCGGCCCCGCTTGGCAATCCTCTCCTA  300

seq1  ACCAGGGTGGTGAGAAAGGGTGCAGATGAGGCTTTCCAGTGGCCAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTGGTGAGAAAGGGTGCAGATGAGGCTTTCCAGTGGCCAGGGTG  350

seq1  TGTAACAGAGGACCAAGCAAAGACACCAGATTCTTGGACTTTACCACCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGAGGACCAAGCAAAGACACCAGATTCTTGGACTTTACCACCGA  400

seq1  AACTGACCTTCTAATAAACTCTTGAGCTCCAGGGTCCCTCGTGATCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCTTCTAATAAACTCTTGAGCTCCAGGGTCCCTCGTGATCTCAG  450

seq1  GAAAACAGGGGTTCTCAGCTAGAGAAACCTGTACTGAGTTAAAATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGGGTTCTCAGCTAGAGAAACCTGTACTGAGTTAAAATTTCCT  500

seq1  ACAAGCCTATTGTAAACTTGTTTGGCTTCCAGGGAAGCAACCTTGAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTATTGTAAACTTGTTTGGCTTCCAGGGAAGCAACCTTGAGAAT  550

seq1  TC  552
      ||
seq2  TC  552

seq1: chr15_100289014_100289951
seq2: B6Ng01-141N18.g_68_1004

seq1  GAATTCAGTTCTGCACACTTGCCCAAGAAACAACCAACTAAATAAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTGCACACTTGCCCAAGAAACAACCAACTAAATAAACTTG  50

seq1  CTAGCCTTCCATTATCTTTAAGCATTCTCAGTGCTTTAACTTATTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTCCATTATCTTTAAGCATTCTCAGTGCTTTAACTTATTATTTT  100

seq1  GTGTGCACGGATGTTTTGTGTGTCTGTGTAGCGTGTGCATGCAGGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACGGATGTTTTGTGTGTCTGTGTAGCGTGTGCATGCAGGGTCTG  150

seq1  TGGAGGCTGATAGAGGGCGTTGGGTTCCATGGAATTGGAGTTGCAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGATAGAGGGCGTTGGGTTCCATGGAATTGGAGTTGCAGACAG  200

seq1  CTGTGAGCTGCCATGTGGTTGCTGGGAACTGAACTTGGGTCCTCTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTGCCATGTGGTTGCTGGGAACTGAACTTGGGTCCTCTGGAAG  250

seq1  AACAGCCAGTGTTCCTAACCTCTGAGCCATCTCTCTAAAATTATTTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCAGTGTTCCTAACCTCTGAGCCATCTCTCTAAAATTATTTGTTA  300

seq1  TTGTGATTGTGTTTGTGTGTGTGTGCATATAAGTGCATGGACACTCGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTGTGTTTGTGTGTGTGTGCATATAAGTGCATGGACACTCGGAA  350

seq1  GATTAAAGCAGGGAGGTCATGAGTTCAAGGCTATTCCAGGCTATATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGCAGGGAGGTCATGAGTTCAAGGCTATTCCAGGCTATATAGCA  400

seq1  AGTTCTAGTCCAGCCTGGGCTACTCACTGAGAACTGTCAGGGAAACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGTCCAGCCTGGGCTACTCACTGAGAACTGTCAGGGAAACAAAG  450

seq1  GATAGGTCATGGTGGCTCACACCTATGATTCTAGTACCTGGGGGCTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTCATGGTGGCTCACACCTATGATTCTAGTACCTGGGGGCTGAGA  500

seq1  TAGGAGGATTGCCACCTGTTTGAAGCCAACCTGGACTTCACCTGTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGATTGCCACCTGTTTGAAGCCAACCTGGACTTCACCTGTGTTGC  550

seq1  AGGCTTATGAAGCTGCAGAGCGAAACTTTGTCTAAAAGCAAAACAAGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATGAAGCTGCAGAGCGAAACTTTGTCTAAAAGCAAAACAAGCCG  600

seq1  GACGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  650
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACGTGGTGGTGCATGCCTTGAATCCCAGCACTTGGGAGGCAGAGGCAGG  650

seq1  CAAACTTCTGAATTGGAGGCCAGCCTGGTCTACAGAGTGAA-TTCCAGGA  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAACTTCTGAATTGGAGGCCAGCCTGGTCTACAGAGTGAATTTCCAGGA  700

seq1  CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACTGAAAAAACAAA  749
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  CAGCCAGGGCTACACAGAGAAATCCTGTCTCGAAAAACTG-AAAAACAAA  749

seq1  CAAACAAACAAAAGCAAAGCAAAACAAAACCTCACAAATTCTAACCAAAA  799
      |||||||||||||||||||||||||||| | |||| ||||||||||||||
seq2  CAAACAAACAAAAGCAAAGCAAAACAAATCTTCAC-AATTCTAACCAAAA  798

seq1  ACACCAAAATTCTGGAAAAAAAAAAATGAACCAAAGGAGAAAGTGAAATG  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACACCAAAATTCTGAAAAAAAAAAAATGAACCAAAGGAGAAAGTGAAATG  848

seq1  ATTTAGGTAACACCAGTTCTGTCCCAACGTGGAGTC-TGCCGCTCAGCCT  898
      ||||||||||| |   |||||||||||||||||||| |||||||||||||
seq2  ATTTAGGTAACTCAGTTTCTGTCCCAACGTGGAGTCTTGCCGCTCAGCCT  898

seq1  TGGGTGAGACATTCAAGTGAACCCCTAGCCTTAGCTAAGA  938
      |||||||||||||| |||||| ||||||||||||||||||
seq2  TGGGTGAGACATTC-AGTGAATCCCTAGCCTTAGCTAAGA  937