BAC Information

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BAC

Clone NameB6Ng01-142J14
Chromosome15 (Build37)
Map Location 41,697,205 - 41,804,880
singlet/doubletdoublet
Overlap geneAbra, EG432946
Upstream geneZfpm2, Oxr1
Downstream geneLOC432947, LOC100039268, LOC100039197, Angpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J14.bB6Ng01-142J14.g
ACCDH940753DH940754
length1,1371,115
definitionDH940753|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J14, 5' end.DH940754|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,697,205 - 41,698,371)(41,803,759 - 41,804,880)
sequence
gaattccaaatatcaatatactatgtttgatagtcttaatacattcttcc
aaaaagtcgagtgtcttcgtcaaaatcttcacatagtaacctcatagaaa
cagtaccaaaagccatttatataaaatcatttaatattgataacattgca
gagcagcttgccttggagcttgtaacacattactatttatcagcggtgag
tggatttgttgcgggcttactcaaggagagtaatcacaacatggtcgtct
cggccttgccatagcatctctccttcaaagtgcaccagtccgtgtttcct
ggcacgcatgaggatgcccacgactttatcagaaattcgaacatagcgat
caaagagttctccgaaagtaacctggatcttgccatctcgtctgtggcga
gccattgtgcggataacaaagcacagttccataatttcccgatagatgtg
ctcttccgctcgcttggccctttcagctgtcttgcttccctctttggggc
ggccatagccctcgtctcccttgtggagccgagtggacatggctagatca
tagtcaaattcgtcactgaagggattgagcttctgggactggacgtgttc
atcggcccactgctgccacctccctttcaagttgtccacttggctgtatt
tccgatgggccttacagttgagtgtctcagagtacctgtttgccctagcg
gagagaagtggagaagcaaagtgaatacatgaagcaagtgccggaccccg
tgtacttcccatgtgtagtctctgtcgtggtatatgtcacaactttcttt
atcaataacaatgatggattagccactagtgatattaaactcaagcttta
aaaacaaaacacaaaaccttccttacatagagtgtgagccatctactaaa
acgttgcatgtcaaacattcttgactagatcagttctagagggtttctga
tagagctatttcccaacatgcatttggtactgctatacagatggagtagt
tctacatagattcatatttatttagtttgtctgttgtttttatgaaagct
gttacactaggtcatgatgaaccacatttttagtatgggttgcacaggtg
aagaacaaaacttattgaacaatggctggcatttttc
gaattcttatcattttttctgggtgattttgtggggaggaatttttgttg
tagttttatttgcttgtgaggaaagtcagtgattttttaatagtatacaa
atacaattaaacagtatcccagaggctgtaattaaaaaccatggtaataa
tacaacatgtaaactgagtcaaaatattagaaatattggagatctctacc
aaactgtttatctcctaccaaaattaccacataccaaaagtaaatctgac
aacagagtccaaaatcaagggtctttcactttgaaatttaatttgtttat
atagtaaaattgatatgtgtgtttatatgtgtgcatacatatatacttgt
gtagaaagagagagagagaaatgaaataaatctccactatattacaaagt
taaatagaactgcagtttaaaacaaatgacatctgaaaggtcaagtgttg
ccaaaggaaaagaaattcctctccaagaatcttaaaattttaatgtagta
atttttctttctagtgttttaataataggttcaaacagtattggaatcac
tgaaaattctgtgtaatgtagtagtccttttcctattaatatattcatat
ttttggtttctacatcatacaacaccgcaaactaattactaaaattaata
tcaaagagaagatttaagaatcatatgcaaaggttaaagaaagccaaata
tgctaaaatgcaagacagtgtcatagaatcagtgttggtataaaaagaaa
ctgacagttattggtatggtctgtttattggttttgacaaatgagccctt
ctgtagggcatgttagtgatacaggagaactaactggtgttacaaaggaa
gttttcattcacagcaagggaaaagatgtgaaaaggggggaagaaaacag
aagaaagatattctgcttcctataaatctcatttcccagctaaacaggac
cccgataaaggctgagcaagcccactgatggtccactgtcatcacaggct
atctcctgacactcaaaaataacccatagaagaaggcatgcaatagagag
ctcatgaacagtagctatcacatgctcaggaaggtttattcactcctgcc
tgttcatacatattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_41697205_41698371
seq2: B6Ng01-142J14.b_46_1182

seq1  GAATTCCAAATATCAATATACTATGTTTGATAGTCTTAATACATTCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATATCAATATACTATGTTTGATAGTCTTAATACATTCTTCC  50

seq1  AAAAAGTCGAGTGTCTTCGTCAAAATCTTCACATAGTAACCTCATAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCGAGTGTCTTCGTCAAAATCTTCACATAGTAACCTCATAGAAA  100

seq1  CAGTACCAAAAGCCATTTATATAAAATCATTTAATATTGATAACATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCAAAAGCCATTTATATAAAATCATTTAATATTGATAACATTGCA  150

seq1  GAGCAGCTTGCCTTGGAGCTTGTAACACATTACTATTTATCAGCGGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTTGCCTTGGAGCTTGTAACACATTACTATTTATCAGCGGTGAG  200

seq1  TGGATTTGTTGCGGGCTTACTCAAGGAGAGTAATCACAACATGGTCGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGTTGCGGGCTTACTCAAGGAGAGTAATCACAACATGGTCGTCT  250

seq1  CGGCCTTGCCATAGCATCTCTCCTTCAAAGTGCACCAGTCCGTGTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTTGCCATAGCATCTCTCCTTCAAAGTGCACCAGTCCGTGTTTCCT  300

seq1  GGCACGCATGAGGATGCCCACGACTTTATCAGAAATTCGAACATAGCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCATGAGGATGCCCACGACTTTATCAGAAATTCGAACATAGCGAT  350

seq1  CAAAGAGTTCTCCGAAAGTAACCTGGATCTTGCCATCTCGTCTGTGGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTTCTCCGAAAGTAACCTGGATCTTGCCATCTCGTCTGTGGCGA  400

seq1  GCCATTGTGCGGATAACAAAGCACAGTTCCATAATTTCCCGATAGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGTGCGGATAACAAAGCACAGTTCCATAATTTCCCGATAGATGTG  450

seq1  CTCTTCCGCTCGCTTGGCCCTTTCAGCTGTCTTGCTTCCCTCTTTGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCGCTCGCTTGGCCCTTTCAGCTGTCTTGCTTCCCTCTTTGGGGC  500

seq1  GGCCATAGCCCTCGTCTCCCTTGTGGAGCCGAGTGGACATGGCTAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGCCCTCGTCTCCCTTGTGGAGCCGAGTGGACATGGCTAGATCA  550

seq1  TAGTCAAATTCGTCACTGAAGGGATTGAGCTTCTGGGACTGGACGTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAATTCGTCACTGAAGGGATTGAGCTTCTGGGACTGGACGTGTTC  600

seq1  ATCGGCCCACTGCTGCCACCTCCCTTTCAAGTTGTCCACTTGGCTGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCCCACTGCTGCCACCTCCCTTTCAAGTTGTCCACTTGGCTGTATT  650

seq1  TCCGATGGGCCTTACAGTTGAGTGTCTCAGAGTACCTGTTTGCCCTAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATGGGCCTTACAGTTGAGTGTCTCAGAGTACCTGTTTGCCCTAGCG  700

seq1  GAGAGAAGTGGAGAAGCAAAGTGAATACATGAAGCAAGTGCCGGACCCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGTGGAGAAGCAAAGTGAATACATGAAGCAAGTGCCGGACCCCG  750

seq1  TGTACTTCCCATGTGTAGTCTCTGTCGTGGTATATGTCACAACTTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCCCATGTGTAGTCTCTGTCGTGGTATATGTCACAACTTTCTTT  800

seq1  ATCAATAACAATGATGGATTAGCCACTAGTGATATTAAACTCAAGCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCAATAACAATGATGGATTAGCCACTAGTGATATTAAACTCAAGCTTT-  849

seq1  AAAAACAAAACACAAAACCTTCCTTACATAGAGTGTGAGGCCATCTACTA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAACAAAACACAAAACCTTCCTTACATAGAGTGTGA-GCCATCTACTA  898

seq1  AAACGTTGCATGTCAAACATTCTTGAACTAGAATCAGTTCTTAGAGGGTT  950
      ||||||||||||||||||||||||| ||||| |||||||| |||||||||
seq2  AAACGTTGCATGTCAAACATTCTTG-ACTAG-ATCAGTTC-TAGAGGGTT  945

seq1  TCTGATAAGAGCTATTTCCCAAACATGCATTTGGTACTGCTATACAGATT  1000
      |||||| ||||||||||||| ||||||||||||||||||||||||||| |
seq2  TCTGAT-AGAGCTATTTCCC-AACATGCATTTGGTACTGCTATACAGA-T  992

seq1  GGAGTAGTTCTACATAGAATTCCATATTTATTTAGGTTTTGTCTGTTTGT  1050
      ||||||||||||||||||  | |||||||||||||  |||||||| ||||
seq2  GGAGTAGTTCTACATAGA--TTCATATTTATTTAG--TTTGTCTG-TTGT  1037

seq1  TTTTATGAAAGCCTGTTTACACTAGGGTCAATGATGAACACACATTTTTT  1100
      ||||||||||| ||| |||||||| |||| ||||||||| ||||||||| 
seq2  TTTTATGAAAG-CTG-TTACACTA-GGTC-ATGATGAAC-CACATTTTT-  1081

seq1  AAAGTAATGGGTTGCACAGGTAGAAGACCAAAAACATTTATTGAACACTA  1150
        ||| ||||||||||||||| ||||| ||||   | ||||||||||   
seq2  --AGT-ATGGGTTGCACAGGT-GAAGAACAAA---ACTTATTGAACA---  1121

seq1  TTTGGCTGGCATTTTTC  1167
        |||||||||||||||
seq2  -ATGGCTGGCATTTTTC  1137

seq1: chr15_41803759_41804880
seq2: B6Ng01-142J14.g_67_1181 (reverse)

seq1  GAATATGTATGAACGAGGAAGGAGTGAATAACACTTCCTGAGCATGTGAT  50
      |||||||||||||| ||| ||||||||||||  |||||||||||||||||
seq2  GAATATGTATGAAC-AGGCAGGAGTGAATAAACCTTCCTGAGCATGTGAT  49

seq1  AGCCTTCCCTGTCATGAAGCTCTCTA-TGCATGCTTTC-TCTATGGGGTT  98
      |||  | |   ||||| ||||||||| ||||||| ||| ||||||||  |
seq2  AGC--TACTGTTCATG-AGCTCTCTATTGCATGCCTTCTTCTATGGG--T  94

seq1  TATTTTTGAGGTGTCAGGAGATAGCCTGTGATGACAGTGGGACCATCAGT  148
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TATTTTTGA-GTGTCAGGAGATAGCCTGTGATGACAGT-GGACCATCAGT  142

seq1  GGGCTTGCCTCAGCCTTTATCGGGGTCCTGTTTAGCTGGGAAATGAGATT  198
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  GGGCTTG-CTCAGCCTTTATCGGGGTCCTGTTTAGCTGGGAAATGAGA-T  190

seq1  TTATAGGAAGCAGAATATCTTTCTTCTGTTTTC-TCCCCCCTTTTCACAT  247
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTATAGGAAGCAGAATATCTTTCTTCTGTTTTCTTCCCCCCTTTTCACAT  240

seq1  CTTTTCCCTTTGCTGTGAATGAAAACTTCCTTTGTAACACCAGTTAGTTC  297
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCC-TTGCTGTGAATGAAAACTTCCTTTGTAACACCAGTTAGTTC  289

seq1  TCCTGTATCACTAACATGCCCTACAGAAGGGCTCATTTGTCAAAACCAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATCACTAACATGCCCTACAGAAGGGCTCATTTGTCAAAACCAAT  339

seq1  AAACAGACCATACCAATAACTGTCAGTTTCTTTTTATACCAACACTGATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACCATACCAATAACTGTCAGTTTCTTTTTATACCAACACTGATT  389

seq1  CTATGACACTGTCTTGCATTTTAGCATATTTGGCTTTCTTTAACC-TTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTATGACACTGTCTTGCATTTTAGCATATTTGGCTTTCTTTAACCTTTGC  439

seq1  ATATGATTCTTAAATCTTCTCTTTGATATTAATTTTAGTAATTAGTTTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTCTTAAATCTTCTCTTTGATATTAATTTTAGTAATTAGTTTGC  489

seq1  GGTGTTGTATGATGTAGAAACCAAAAATATGAATATATTAATAGGAAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGTATGATGTAGAAACCAAAAATATGAATATATTAATAGGAAAAG  539

seq1  GACTACTACATTACACAGAATTTTCAGTGATTCCAATACTGTTTGAACCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTACATTACACAGAATTTTCAGTGATTCCAATACTGTTTGAACCT  589

seq1  ATTATTAAAACACTAGAAAGAAAAATTACTACATTAAAATTTTAAGATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAAACACTAGAAAGAAAAATTACTACATTAAAATTTTAAGATTC  639

seq1  TTGGAGAGGAATTTCTTTTCCTTTGGCAACACTTGACCTTTCAGATGTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGAATTTCTTTTCCTTTGGCAACACTTGACCTTTCAGATGTCA  689

seq1  TTTGTTTTAAACTGCAGTTCTATTTAACTTTGTAATATAGTGGAGATTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAAACTGCAGTTCTATTTAACTTTGTAATATAGTGGAGATTTA  739

seq1  TTTCATTTCTCTCTCTCTCTTTCTACACAAGTATATATGTATGCACACAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCTCTCTCTCTCTTTCTACACAAGTATATATGTATGCACACAT  789

seq1  ATAAACACACATATCAATTTTACTATATAAACAAATTAAATTTCAAAGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACACATATCAATTTTACTATATAAACAAATTAAATTTCAAAGTG  839

seq1  AAAGACCCTTGATTTTGGACTCTGTTGTCAGATTTACTTTTGGTATGTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCTTGATTTTGGACTCTGTTGTCAGATTTACTTTTGGTATGTGG  889

seq1  TAATTTTGGTAGGAGATAAACAGTTTGGTAGAGATCTCCAATATTTCTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGGTAGGAGATAAACAGTTTGGTAGAGATCTCCAATATTTCTAA  939

seq1  TATTTTGACTCAGTTTACATGTTGTATTATTACCATGGTTTTTAATTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGACTCAGTTTACATGTTGTATTATTACCATGGTTTTTAATTACA  989

seq1  GCCTCTGGGATACTGTTTAATTGTATTTGTATACTATTAAAAAATCACTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGGATACTGTTTAATTGTATTTGTATACTATTAAAAAATCACTG  1039

seq1  ACTTTCCTCACAAGCAAATAAAACTACAACAAAAATTCCTCCCCACAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTCACAAGCAAATAAAACTACAACAAAAATTCCTCCCCACAAAA  1089

seq1  TCACCCAGAAAAAATGATAAGAATTC  1122
      ||||||||||||||||||||||||||
seq2  TCACCCAGAAAAAATGATAAGAATTC  1115