BAC Information

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BAC

Clone NameB6Ng01-143F03
Chromosome15 (Build37)
Map Location 93,267,752 - 93,400,728
singlet/doubletdoublet
Overlap genePphln1, Prickle1
Upstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, LOC627623
Downstream geneZfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143F03.bB6Ng01-143F03.g
ACCDH941287DH941288
length978677
definitionDH941287|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F03, 5' end.DH941288|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,267,752 - 93,268,373)(93,400,052 - 93,400,728)
sequence
gaattccaactgtcaggcagatagatgcctttacccatcagctctcttgt
ctttctgatcctcctgcctccaccttcagagcgctgcagttatatctgtg
tgctgtgtgcagtcagacctgtgtgctgtgtgcagtcagacctgtggtgt
gctgtgtgctcagcttgatatggtgctccctaccaacagcttcacatcag
cttacaaaacaaaactaaaacaaataaacaaaaatcttaccagtgagatc
ctggaactctcagtcccaagtgggatgtctcccttccctctgttctcagg
aagctatgtggaagaggatacaggttcttaagagccagtggggatggaag
acagcaaggaaaccaggcctcctacacacaacaggactgatgcactagaa
actcacagagacggtggcaacatgcaccagagtccacacaggtctaagcc
agatgggttcctagtgctgagaagaaaataggcccacgtccccacctcta
accctgagtagctccagtcaataactgcttccagatgaagcatccgtttt
ctccaagagatctcacctgggaaacggaccacacttaagggcaggcccca
cacccagcaggagatggccaactcaaagtgaactcatggtattttggagg
ttctttgtctcatgttgctttggacgttttatttttcttttcttttttag
tcttccgtatcttttggttatatggttccctagtttgtttttatgggatg
tttgtgtgcatgtgtgtgtctcagcatctgtgtgatttctctgtggctct
tcttgtcctgtttgttttgtcctattctggtttgtttgttttctttcttt
tgtttgtttgtttatttggagacagggtttctctgtgtagccctggctgt
cctggaactcactctgtagaccaggctgggcctcgaactcagaaatattc
tgccttgcctcctgagtgctgggattaa
gaattcaatttccagcacccatgtggcggctgacaattgtgtgtaactcc
agctccaaaggatctgacaccttcatatagacattaaaaacaaaacagaa
caaaaaaaaaacctaaaaaaaaatgttggttagacactaattttgtgaga
tgctgttgtctgtgattgtgtatggcataaagaaagaaagcccttcagca
caggcaataggcttcacccatccatctaccatgatatcttctactgtgga
acccgtcatgttgggtacaatccataccagagccaacaagtcagtcagtt
acctgtgtttagtgatgaggccaggatagctccctcagcatggaaaggct
acagtgagttttctttggtccatgttaattacaaaggcgtagttaaatcg
ggttcacaataaagacactcttcagacctcacgacctctcacagttcgga
tggatatgtttgccgcttcctagaacccaccaggaagcagtctgaaaaaa
agactagtaaggagagagaggagcaatgtccttatagggtttaatgtgtg
gccagcacagtacagggcccaagctctttgtcctttgttttgtttttgtt
tttgttttttgtttgtttttttttttaagcttgtttgctggggacctagg
gaattggttttggagttggggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_93267752_93268373
seq2: B6Ng01-143F03.b_47_668

seq1  GAATTCCAACTGTCAGGCAGATAGATGCCTTTACCCATCAGCTCTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGTCAGGCAGATAGATGCCTTTACCCATCAGCTCTCTTGT  50

seq1  CTTTCTGATCCTCCTGCCTCCACCTTCAGAGCGCTGCAGTTATATCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATCCTCCTGCCTCCACCTTCAGAGCGCTGCAGTTATATCTGTG  100

seq1  TGCTGTGTGCAGTCAGACCTGTGTGCTGTGTGCAGTCAGACCTGTGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGCAGTCAGACCTGTGTGCTGTGTGCAGTCAGACCTGTGGTGT  150

seq1  GCTGTGTGCTCAGCTTGATATGGTGCTCCCTACCAACAGCTTCACATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGCTCAGCTTGATATGGTGCTCCCTACCAACAGCTTCACATCAG  200

seq1  CTTACAAAACAAAACTAAAACAAATAAACAAAAATCTTACCAGTGAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAACAAAACTAAAACAAATAAACAAAAATCTTACCAGTGAGATC  250

seq1  CTGGAACTCTCAGTCCCAAGTGGGATGTCTCCCTTCCCTCTGTTCTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCTCAGTCCCAAGTGGGATGTCTCCCTTCCCTCTGTTCTCAGG  300

seq1  AAGCTATGTGGAAGAGGATACAGGTTCTTAAGAGCCAGTGGGGATGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGTGGAAGAGGATACAGGTTCTTAAGAGCCAGTGGGGATGGAAG  350

seq1  ACAGCAAGGAAACCAGGCCTCCTACACACAACAGGACTGATGCACTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGGAAACCAGGCCTCCTACACACAACAGGACTGATGCACTAGAA  400

seq1  ACTCACAGAGACGGTGGCAACATGCACCAGAGTCCACACAGGTCTAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGAGACGGTGGCAACATGCACCAGAGTCCACACAGGTCTAAGCC  450

seq1  AGATGGGTTCCTAGTGCTGAGAAGAAAATAGGCCCACGTCCCCACCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTTCCTAGTGCTGAGAAGAAAATAGGCCCACGTCCCCACCTCTA  500

seq1  ACCCTGAGTAGCTCCAGTCAATAACTGCTTCCAGATGAAGCATCCGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGTAGCTCCAGTCAATAACTGCTTCCAGATGAAGCATCCGTTTT  550

seq1  CTCCAAGAGATCTCACCTGGGAAACGGACCACACTTAAGGGCAGGCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAGATCTCACCTGGGAAACGGACCACACTTAAGGGCAGGCCCCA  600

seq1  CACCCAGCAGGAGATGGCCAAC  622
      ||||||||||||||||||||||
seq2  CACCCAGCAGGAGATGGCCAAC  622

seq1: chr15_93400052_93400728
seq2: B6Ng01-143F03.g_67_743 (reverse)

seq1  CCCTCCCCCCAACTCCAAAACCAATTCCCTAGGTCCCCAGCAAACAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCCAACTCCAAAACCAATTCCCTAGGTCCCCAGCAAACAAGCT  50

seq1  TAAAAAAAAAAACAAACAAAAAACAAAAACAAAAACAAAACAAAGGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAACAAACAAAAAACAAAAACAAAAACAAAACAAAGGACAA  100

seq1  AGAGCTTGGGCCCTGTACTGTGCTGGCCACACATTAAACCCTATAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGGGCCCTGTACTGTGCTGGCCACACATTAAACCCTATAAGGAC  150

seq1  ATTGCTCCTCTCTCTCCTTACTAGTCTTTTTTTCAGACTGCTTCCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCTCTCTCTCCTTACTAGTCTTTTTTTCAGACTGCTTCCTGGTG  200

seq1  GGTTCTAGGAAGCGGCAAACATATCCATCCGAACTGTGAGAGGTCGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGGAAGCGGCAAACATATCCATCCGAACTGTGAGAGGTCGTGAG  250

seq1  GTCTGAAGAGTGTCTTTATTGTGAACCCGATTTAACTACGCCTTTGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGAGTGTCTTTATTGTGAACCCGATTTAACTACGCCTTTGTAAT  300

seq1  TAACATGGACCAAAGAAAACTCACTGTAGCCTTTCCATGCTGAGGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGACCAAAGAAAACTCACTGTAGCCTTTCCATGCTGAGGGAGCT  350

seq1  ATCCTGGCCTCATCACTAAACACAGGTAACTGACTGACTTGTTGGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCCTCATCACTAAACACAGGTAACTGACTGACTTGTTGGCTCTG  400

seq1  GTATGGATTGTACCCAACATGACGGGTTCCACAGTAGAAGATATCATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATTGTACCCAACATGACGGGTTCCACAGTAGAAGATATCATGGT  450

seq1  AGATGGATGGGTGAAGCCTATTGCCTGTGCTGAAGGGCTTTCTTTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATGGGTGAAGCCTATTGCCTGTGCTGAAGGGCTTTCTTTCTTTA  500

seq1  TGCCATACACAATCACAGACAACAGCATCTCACAAAATTAGTGTCTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATACACAATCACAGACAACAGCATCTCACAAAATTAGTGTCTAACC  550

seq1  AACATTTTTTTTTAGGTTTTTTTTTTGTTCTGTTTTGTTTTTAATGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTTTTTAGGTTTTTTTTTTGTTCTGTTTTGTTTTTAATGTCTA  600

seq1  TATGAAGGTGTCAGATCCTTTGGAGCTGGAGTTACACACAATTGTCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGTGTCAGATCCTTTGGAGCTGGAGTTACACACAATTGTCAGCC  650

seq1  GCCACATGGGTGCTGGAAATTGAATTC  677
      |||||||||||||||||||||||||||
seq2  GCCACATGGGTGCTGGAAATTGAATTC  677