BAC Information

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BAC

Clone NameB6Ng01-144F07
Chromosome15 (Build37)
Map Location 3,333,832 - 3,450,423
singlet/doubletdoublet
Overlap geneGhr
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139
Downstream geneLOC223278, Fbxo4, AW549877, LOC100039196, Oxct1, Plcxd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144F07.bB6Ng01-144F07.g
ACCDH942037DH942038
length1,0351,139
definitionDH942037|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F07, 5' end.DH942038|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,449,376 - 3,450,423)(3,333,832 - 3,334,975)
sequence
gaattcaaaaatatataaaaaggaacttgacctaaatacacctggatgat
agcagaattttccctagactctcaggatcttaaaagtatgagtatttaca
aggaaataaggttgtaattattaaccattgagtatgaagcaaattcattg
aaaattaactgcagtattctttgatcccagtgtttgtaaccaaactgcta
atcttggacaaatataagattatgttactaatctaatggcatttagcaca
aattagccatcaaataggccacttgttagtattggaaaattctgaagtat
attaaatttacttcatttcctatatttctctctctaatacagaaccttgg
gtctttttattggtcagagaaatttccacacaagctaatcactagcacag
taattgcctatggtatcaagtcagccctaccaccaaactgattccagttt
caagttcacctagtagaaaagattgctagtctttgtagataacatttgat
tcgaaaagtaaaatgtttattgtatagttgcattctgtccatggcaatca
gttgcctgttaatcctttctgactatgctttttaataagaaatgggtatt
acaaattcactcaggctcataaaagaaggtatgagcatgttgtgcatgct
tgacacttgcctttctttgtccatggtcctctgatcgtgcagctttgaca
tggaagtgcaatttaaaattacatgtggtgaaatttgaagtgtcttatta
gtcaaggtcatgccaaaaaacaaaatttaactagaagcctcctaaggttt
taatgaaggaagagtcccagaagaagttgagtgtgattgaattcaccagc
aagaaaagtttacgttcatgatccactatgatcacctgtggttaagctcc
tgtactgattatcttgggctgaagcacttatggagaaatggtgttactgg
agcctggccagggagaacatgcaagaatcatgaaagagatgggttccgca
gtgaccaagcccttaggaagcgaaaaatgggaaag
gaattctttgtgccccatttttaatggggttaggcaactagttcttaatg
ttgacattactcaataagaaaagaatgctcgacaggggcagggctgcttc
agtttttgtttgagctgtccagatacagcagtgattgaacagagatctac
aacatacaacaacttcacactatgaccctaactccacgtccagatggtaa
atctcagcagaaggcttttaggaaagagtctaagtatatacagcaatgga
tgagagacacatccagctttctctctgcttattctgccctttttatgaat
gcccaatgaaggacatgaagaccatgaagtagtaagaggacttaagtgtt
gggggaaactttgtgtcacctgcatttctttcaagtgtaaattttaacta
ttcattgacaatgaaggatgttctaggtccttactgggaactagaatgta
caaggattataagatacaacctctaatcataagtattatacagtttatta
ataggagatagaaaatgcacaaaaatttacattaagctcaacctattatg
attttaggacacatagtagagttgagtagaggtagctgaacaatattcag
tctaataaatgttggattaaaatgagagccacaaagagtatacaatacat
accatgtattttataaagggtctaggtatttctgcttaactataatcttt
ctgagaactttataaagtagctgttcttaacatttagaggcacttctgct
aaattaacatagaattaaactgccaactaaatacttgtctttatatttat
aggtcactgcagctctcaagactctttggagaaacctctttctgcaatag
atggtgattaatacagagatctgtgactagcccagaagagactgcagagt
gctcagctttaaatgagacatctgtatcacacccttcacatcttcagagt
tggaaagactttcagaccagaggaagtggatgactgcaggaacagtgtta
tgggtaggcatgtcaaagctgctgcacccgtgaatgcccattatttatga
ctgcatgtcaagaacctggacaagattcaggcagaacaattccagcatga
acatggtgcttcaaaagacccacacctgatggctgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_3449376_3450423
seq2: B6Ng01-144F07.b_45_1079 (reverse)

seq1  CTTTCCCATTTGTCTGCTTTCTAGAAGAGCCTGGGTCACTGCAGAACTCC  50
      ||||||||||| || |||| ||  ||| | || ||||||||| |||| ||
seq2  CTTTCCCATTTTTC-GCTTCCT--AAG-GGCTTGGTCACTGCGGAAC-CC  45

seq1  ATCTTCTCTCATGGATCCTCTGCATGGTTCTCACTTGCCCAGGGCTACAG  100
      ||| ||| |||| ||| || ||||| |||||| || |||   |||| |||
seq2  ATC-TCTTTCAT-GATTCT-TGCAT-GTTCTCCCTGGCC--AGGCTCCAG  89

seq1  TAACACCATTTCCTCCCATAGTGGCTTCAGGCCAAGGATAATCAGTACAG  150
      ||||||||||||   |||||   ||||||| |||| ||||||||||||||
seq2  TAACACCATTTC--TCCATAAGTGCTTCAGCCCAA-GATAATCAGTACAG  136

seq1  GAGCCTAAACACA-GTGATCATAGT-GATCATGAACGTAAACTTTTCTTG  198
      |||| ||| |||| ||||||||||| ||||||||||||||||||||||||
seq2  GAGCTTAACCACAGGTGATCATAGTGGATCATGAACGTAAACTTTTCTTG  186

seq1  CTGGTGAATTCAATCACACTCAACCTTCTTCTGTGACTCTTCCTTCATTA  248
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CTGGTGAATTCAATCACACTCAA-CTTCTTCTGGGACTCTTCCTTCATTA  235

seq1  AAACCTTAGGAGGCTTCTAGTTAAATTTTGTTTTTTGGCATGACCTTGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTAGGAGGCTTCTAGTTAAATTTTGTTTTTTGGCATGACCTTGAC  285

seq1  TAATAAGACACTTCAAATTTCACCACATGTAATTTTAAATTGCACTTCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGACACTTCAAATTTCACCACATGTAATTTTAAATTGCACTTCCA  335

seq1  TGTCAAAGCTGCACGATCAGAGGACCATGGACAAAGAAAGGCAAGTGTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGCTGCACGATCAGAGGACCATGGACAAAGAAAGGCAAGTGTCA  385

seq1  AGCATGCACAACATGCTCATACCTTCTTTTATGAGCCTGAGTGAATTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCACAACATGCTCATACCTTCTTTTATGAGCCTGAGTGAATTTGT  435

seq1  AATACCCATTTCTTATTAAAAAGCATAGTCAGAAAGGATTAACAGGCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCATTTCTTATTAAAAAGCATAGTCAGAAAGGATTAACAGGCAAC  485

seq1  TGATTGCCATGGACAGAATGCAACTATACAATAAACATTTTACTTTTCGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCCATGGACAGAATGCAACTATACAATAAACATTTTACTTTTCGA  535

seq1  ATCAAATGTTATCTACAAAGACTAGCAATCTTTTCTACTAGGTGAACTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTTATCTACAAAGACTAGCAATCTTTTCTACTAGGTGAACTTG  585

seq1  AAACTGGAATCAGTTTGGTGGTAGGGCTGACTTGATACCATAGGCAATTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAATCAGTTTGGTGGTAGGGCTGACTTGATACCATAGGCAATTA  635

seq1  CTGTGCTAGTGATTAGCTTGTGTGGAAATTTCTCTGACCAATAAAAAGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTAGTGATTAGCTTGTGTGGAAATTTCTCTGACCAATAAAAAGAC  685

seq1  CCAAGGTTCTGTATTAGAGAGAGAAATATAGGAAATGAAGTAAATTTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTCTGTATTAGAGAGAGAAATATAGGAAATGAAGTAAATTTAAT  735

seq1  ATACTTCAGAATTTTCCAATACTAACAAGTGGCCTATTTGATGGCTAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAGAATTTTCCAATACTAACAAGTGGCCTATTTGATGGCTAATT  785

seq1  TGTGCTAAATGCCATTAGATTAGTAACATAATCTTATATTTGTCCAAGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAAATGCCATTAGATTAGTAACATAATCTTATATTTGTCCAAGAT  835

seq1  TAGCAGTTTGGTTACAAACACTGGGATCAAAGAATACTGCAGTTAATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTTGGTTACAAACACTGGGATCAAAGAATACTGCAGTTAATTTT  885

seq1  CAATGAATTTGCTTCATACTCAATGGTTAATAATTACAACCTTATTTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATTTGCTTCATACTCAATGGTTAATAATTACAACCTTATTTCCT  935

seq1  TGTAAATACTCATACTTTTAAGATCCTGAGAGTCTAGGGAAAATTCTGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATACTCATACTTTTAAGATCCTGAGAGTCTAGGGAAAATTCTGCT  985

seq1  ATCATCCAGGTGTATTTAGGTCAAGTTCCTTTTTATATATTTTTGAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAGGTGTATTTAGGTCAAGTTCCTTTTTATATATTTTTGAATTC  1035

seq1: chr15_3333832_3334975
seq2: B6Ng01-144F07.g_67_1205

seq1  GAATTCTTTGTGCCCCATTTTTAATGGGGTTAGGCAACTAGTTCTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGCCCCATTTTTAATGGGGTTAGGCAACTAGTTCTTAATG  50

seq1  TTGACATTACTCAATAAGAAAAGAATGCTCGACAGGGGCAGGGCTGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTACTCAATAAGAAAAGAATGCTCGACAGGGGCAGGGCTGCTTC  100

seq1  AGTTTTTGTTTGAGCTGTCCAGATACAGCAGTGATTGAACAGAGATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGTTTGAGCTGTCCAGATACAGCAGTGATTGAACAGAGATCTAC  150

seq1  AACATACAACAACTTCACACTATGACCCTAACTCCACGTCCAGATGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACAACAACTTCACACTATGACCCTAACTCCACGTCCAGATGGTAA  200

seq1  ATCTCAGCAGAAGGCTTTTAGGAAAGAGTCTAAGTATATACAGCAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCAGAAGGCTTTTAGGAAAGAGTCTAAGTATATACAGCAATGGA  250

seq1  TGAGAGACACATCCAGCTTTCTCTCTGCTTATTCTGCCCTTTTTATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACACATCCAGCTTTCTCTCTGCTTATTCTGCCCTTTTTATGAAT  300

seq1  GCCCAATGAAGGACATGAAGACCATGAAGTAGTAAGAGGACTTAAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGAAGGACATGAAGACCATGAAGTAGTAAGAGGACTTAAGTGTT  350

seq1  GGGGGAAACTTTGTGTCACCTGCATTTCTTTCAAGTGTAAATTTTAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAACTTTGTGTCACCTGCATTTCTTTCAAGTGTAAATTTTAACTA  400

seq1  TTCATTGACAATGAAGGATGTTCTAGGTCCTTACTGGGAACTAGAATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGACAATGAAGGATGTTCTAGGTCCTTACTGGGAACTAGAATGTA  450

seq1  CAAGGATTATAAGATACAACCTCTAATCATAAGTATTATACAGTTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTATAAGATACAACCTCTAATCATAAGTATTATACAGTTTATTA  500

seq1  ATAGGAGATAGAAAATGCACAAAAATTTACATTAAGCTCAACCTATTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGATAGAAAATGCACAAAAATTTACATTAAGCTCAACCTATTATG  550

seq1  ATTTTAGGACACATAGTAGAGTTGAGTAGAGGTAGCTGAACAATATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGACACATAGTAGAGTTGAGTAGAGGTAGCTGAACAATATTCAG  600

seq1  TCTAATAAATGTTGGATTAAAATGAGAGCCACAAAGAGTATACAATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAATGTTGGATTAAAATGAGAGCCACAAAGAGTATACAATACAT  650

seq1  ACCATGTATTTTATAAAGGGTCTAGGTATTTCTGCTTAACTATAATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTATTTTATAAAGGGTCTAGGTATTTCTGCTTAACTATAATCTTT  700

seq1  CTGAGAACTTTATAAAGTAGCTGTTCTTAACATTTAGAGGCACTTCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTTTATAAAGTAGCTGTTCTTAACATTTAGAGGCACTTCTGCT  750

seq1  AAATTAACATAGAATTAAACTGCCAACTAAATACTTGTCTTTATATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACATAGAATTAAACTGCCAACTAAATACTTGTCTTTATATTTAT  800

seq1  AGGTCACTGCAGCTCTCAAGACTCTTTGGAGAAACCTCTTTCTGCAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTGCAGCTCTCAAGACTCTTTGGAGAAACCTCTTTCTGCAATAG  850

seq1  ATGGTGATTAATACAGAGATCTGTGACTAGCCCAGAAGAGACTGCAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATTAATACAGAGATCTGTGACTAGCCCAGAAGAGACTGCAGAGT  900

seq1  GCTCAGCTTTAAATGAGACATCTGTATCACACCCTTCACATCTCAGGAGT  950
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  GCTCAGCTTTAAATGAGACATCTGTATCACACCCTTCACATCTTCAGAGT  950

seq1  TGGAAAGACCTTCAGAACCAGAGGAAGTGGATGACTGCAGGGAACAGTGT  1000
      ||||||||| ||||| ||||||||||||||||||||||| ||||||||||
seq2  TGGAAAGACTTTCAG-ACCAGAGGAAGTGGATGACTGCA-GGAACAGTGT  998

seq1  TTATTGGGTAGGCATGTCACAGCTGCTGCACACGTGAATGCCCATCATTT  1050
      |   ||||||||||||||| ||||||||||| ||||||||||||| ||||
seq2  T--ATGGGTAGGCATGTCAAAGCTGCTGCACCCGTGAATGCCCATTATTT  1046

seq1  ATGACTGCATGTCAAAGACCTGGACAAGATCAAGGCAGAAACAATTCCAG  1100
      |||||||||||||||  |||||||||||||  |||||| |||||||||||
seq2  ATGACTGCATGTCAAGAACCTGGACAAGATTCAGGCAG-AACAATTCCAG  1095

seq1  CATGGACATGGTGCTCACAAAGCACCACAACTGATGGCTGCTGG  1144
      |||| ||||||||||   ||||  ||||| ||||||||||||||
seq2  CATGAACATGGTGCTTCAAAAGACCCACACCTGATGGCTGCTGG  1139