BAC Information

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BAC

Clone NameB6Ng01-146B02
Chromosome15 (Build37)
Map Location 92,595,862 - 92,750,791
singlet/doubletdoublet
Overlap genePdzrn4
Upstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146B02.bB6Ng01-146B02.g
ACCDH943306DH943307
length330945
definitionDH943306|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B02, 5' end.DH943307|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,595,862 - 92,596,191)(92,749,848 - 92,750,791)
sequence
cttcatcccgtcatataaacacatacaatataatgtgtatacaacagaat
atacagaaacacacatacacaaagtttgtctatttttcagctagtcagga
gactacaatacaaactgccaggctataaaaaaagaaagttaaaaccgact
tgtattcgtgagccaatagaaaagtcaaggccatctaatcttaaggtttg
tattatcaagtcttctacagtcttcagatgggctttcagatgaagccagg
tccacagcacctaatagagggttggttttttgtttgttttgttttgttgt
tttttgggttttttgttgttgttgttgttg
gaattctcatttccccccaccataacctccacaaattcacttttcctaca
atgcttaggtctgtaattcattcatcaaaccctgatgggtactagagtct
gtgattcttttaaggcaactgttatgaaaaaaaagccttatcattatctt
cttgaaggaaactatcttcattttctttttttttacatttccatcagtct
ctgcatcgtctacagtaaaaacaatatacagttttattttacttatttgt
cttcctgtctcccatggcaaacatctaatttgttactaaatggtatttat
gggtttgaacttgtttgttttctgcattaccccggcacccagggtcccag
gatacactgacaatacgtatatatgcttatcaatgtgccctcgggaaatg
aaataacacacaaagctcattcgctattttccaacaaacttcataacctt
ctccctgattctatcctttggatagatttctggtttatcttatgtgtgag
aaatgaccttataacccgtgtgtaacagttgtttgggttttattaagtgc
cctgctagctcgtgatataggggcattactcatagatatttgttggctac
cccagtaagccaagaaaatttatttttatatatttaactgcggtgtcttt
cttctcctgcatgtcatttaaaagtagctcacagtctaatgatagtgcca
ccaattccgactttagatgaacaggaaagagatagattgtcataatgggt
cagagaggtgaaaacttgggtagcatacacatctcccagggaagaagcaa
actttgatgaaaattaaacattaattcaaaccaaagggagcctctattct
ctttctatttagagagagactcatcattgcccttcttctgtcccccagaa
tatcaagaaacaggagttcagaatgtattgcatccagccatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92595862_92596191
seq2: B6Ng01-146B02.b_49_378

seq1  CTTCATCCCGTCATATAAACACATACAATATAATGTGTATACAACAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCCGTCATATAAACACATACAATATAATGTGTATACAACAGAAT  50

seq1  ATACAGAAACACACATACACAAAGTTTGTCTATTTTTCAGCTAGTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAACACACATACACAAAGTTTGTCTATTTTTCAGCTAGTCAGGA  100

seq1  GACTACAATACAAACTGCCAGGCTATAAAAAAAGAAAGTTAAAACCGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAATACAAACTGCCAGGCTATAAAAAAAGAAAGTTAAAACCGACT  150

seq1  TGTATTCGTGAGCCAATAGAAAAGTCAAGGCCATCTAATCTTAAGGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCGTGAGCCAATAGAAAAGTCAAGGCCATCTAATCTTAAGGTTTG  200

seq1  TATTATCAAGTCTTCTACAGTCTTCAGATGGGCTTTCAGATGAAGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCAAGTCTTCTACAGTCTTCAGATGGGCTTTCAGATGAAGCCAGG  250

seq1  TCCACAGCACCTAATAGAGGGTTGGTTTTTTGTTTGTTTTGTTTTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCACCTAATAGAGGGTTGGTTTTTTGTTTGTTTTGTTTTGTTGT  300

seq1  TTTTTGGGTTTTTTGTTGTTGTTGTTGTTG  330
      ||||||||||||||||||||||||||||||
seq2  TTTTTGGGTTTTTTGTTGTTGTTGTTGTTG  330

seq1: chr15_92749848_92750791
seq2: B6Ng01-146B02.g_67_1011 (reverse)

seq1  TCAGATGGCTGGATGC-ATACATTCTGAGCTCCTGTTTCTTGATACTCTG  49
      |||||||||||||||| ||||||||||| |||||||||||||||| ||||
seq2  TCAGATGGCTGGATGCAATACATTCTGAACTCCTGTTTCTTGATATTCTG  50

seq1  GGGGACAGAAGAAGGGCAATGATTGAGTCTTTCTCTAAATAGAAAGAGAA  99
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  GGGGACAGAAGAAGGGCAATGA-TGAGTCTCTCTCTAAATAGAAAGAGAA  99

seq1  TAGAAGGCTCCCTTTGGTTTGAATTTATGTTTAATTTTCATC-AAGTTTG  148
      ||| ||||||||||||||||||||| |||||||||||||||| |||||||
seq2  TAG-AGGCTCCCTTTGGTTTGAATTAATGTTTAATTTTCATCAAAGTTTG  148

seq1  CTTCTTCCCTGGGAGATGTGTATGCTA-CCAAGTTTTCACCTCTCTGACC  197
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTCTTCCCTGGGAGATGTGTATGCTACCCAAGTTTTCACCTCTCTGACC  198

seq1  CATTATGACAATCTATCTCTTTCCTGTTCATCTAAAGTCGGAATTGGTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGACAATCTATCTCTTTCCTGTTCATCTAAAGTCGGAATTGGTGG  248

seq1  CACTATCATTAGACTGTGAGCTACTTTTAAATGACATGCAGGAGAAGAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCATTAGACTGTGAGCTACTTTTAAATGACATGCAGGAGAAGAAA  298

seq1  GACACCGCAGTTAAATATATAAAAATAAATTTTCTTGGCTTACTGGGGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCGCAGTTAAATATATAAAAATAAATTTTCTTGGCTTACTGGGGTA  348

seq1  GCCAACAAATATCTATGAGTAATGCCCCTATATCACGAGCTAGCAGGGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAATATCTATGAGTAATGCCCCTATATCACGAGCTAGCAGGGCA  398

seq1  CTTAATAAAACCCAAACAACTGTTACACACGGGTTATAAGGTCATTTCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAAAACCCAAACAACTGTTACACACGGGTTATAAGGTCATTTCTC  448

seq1  ACACATAAGATAAACCAGAAATCTATCCAAAGGATAGAATCAGGGAGAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAGATAAACCAGAAATCTATCCAAAGGATAGAATCAGGGAGAAG  498

seq1  GTTATGAAGTTTGTTGGAAAATAGCGAATGAGCTTTGTGTGTTATTTCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAGTTTGTTGGAAAATAGCGAATGAGCTTTGTGTGTTATTTCAT  548

seq1  TTCCCGAGGGCACATTGATAAGCATATATACGTATTGTCAGTGTATCCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAGGGCACATTGATAAGCATATATACGTATTGTCAGTGTATCCTG  598

seq1  GGACCCTGGGTGCCGGGGTAATGCAGAAAACAAACAAGTTCAAACCCATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGGGTGCCGGGGTAATGCAGAAAACAAACAAGTTCAAACCCATA  648

seq1  AATACCATTTAGTAACAAATTAGATGTTTGCCATGGGAGACAGGAAGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATTTAGTAACAAATTAGATGTTTGCCATGGGAGACAGGAAGACA  698

seq1  AATAAGTAAAATAAAACTGTATATTGTTTTTACTGTAGACGATGCAGAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAAAATAAAACTGTATATTGTTTTTACTGTAGACGATGCAGAGA  748

seq1  CTGATGGAAATGTAAAAAAAAAGAAAATGAAGATAGTTTCCTTCAAGAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAAATGTAAAAAAAAAGAAAATGAAGATAGTTTCCTTCAAGAAG  798

seq1  ATAATGATAAGGCTTTTTTTTCATAACAGTTGCCTTAAAAGAATCACAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATAAGGCTTTTTTTTCATAACAGTTGCCTTAAAAGAATCACAGA  848

seq1  CTCTAGTACCCATCAGGGTTTGATGAATGAATTACAGACCTAAGCATTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTACCCATCAGGGTTTGATGAATGAATTACAGACCTAAGCATTGT  898

seq1  AGGAAAAGTGAATTTGTGGAGGTTATGGTGGGGGGAAATGAGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGTGAATTTGTGGAGGTTATGGTGGGGGGAAATGAGAATTC  945