BAC Information

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BAC

Clone NameB6Ng01-150P05
Chromosome15 (Build37)
Map Location 50,706,989 - 50,850,463
singlet/doubletdoublet
Overlap geneTrps1, LOC100039644
Upstream geneLOC665160
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150P05.bB6Ng01-150P05.g
ACCDH946896DH946897
length1,1531,156
definitionDH946896|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P05, 5' end.DH946897|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,849,299 - 50,850,463)(50,706,989 - 50,708,166)
sequence
gaattcctaccatgtgccctgtagtatggtagaacctgtagacactgaaa
gaataggggcaaatgcttattttgttaaactatttgtattttggagaaag
aagcaggaacaaaccaagagatcagtgtagtgataaaaattaggtattcg
taatacaatgtgattttagagattataaattttatattgaaaaatggaaa
gcaagaaaatatttaatatgggttgggaaattggctatggaagtttcttg
aagaaggtaatgcttcagacagagatcaggtggtcagcctgaggggctgg
gagtcttgtaaagagtccagaaaggtgtggcctggggagagtcaggagca
agttcagagattcttaaaggatgaagtcttaggctttagaacaggtcatt
taaattctcataagatgggcaatgaacaataggcattatctcacaccttc
aacaagcctttactcacaagaagagacatgcatctttcatcagaaaaaca
cagctttatataacagaggggaaattctttaaaattttgaacactcaaac
ttcctttctgttatcatttttggagtatgagagtattaggatatactaat
tttaaatttgaatttgtttacacttttacatcttaaagtccattaaaaac
tactaaatgtgaccttttgtgatgttgtgtacaagttaatggatagtggt
ttatatggataccatatgcattttgactttcaaaggccaagcctttactg
aaattattaacaacaattactaactagtactttgataaaacatataaatg
accatttaaaggattcttacatttcagcatctcatattcattttgaaata
atattcacatttacttatttatttctctatttatttttttgtatatgtgt
gactggattgtgcaagcacatacacacgtgccatgatacctgtgtgaaga
atagacaagagtctgtctcttcttctaaatgtgggggtccagtgactaaa
ttcaagtttagtttgcagccagtacattttcctcctctaggcatctcact
ggcatacatcatttagttttccaattaaaaacgctatttttaaggtttta
tcaatttattgctagcttagtgctaacataagaaatttacatttattggg
agg
gaattctgtacttcaaacacaccaaatgaaaattgacttgattagaatca
agaaaaaaataaacattaattatatccatgtcaaaatccatccaaaccat
ggctaaatatgtaaagtgaagagattgtaaaataaataaataaataaaat
aatcatatctatacattaaatatttcattttaccgcatttgaagctgaaa
tgtatctatcatttgaattacaggactaagagggaaagagttaataaaaa
aaggtttttccccctttgttcttttgataaattgtttttgtaagtgctga
gaagtttgtataaaatgctatgaaccctttcttaaccacattcaaataaa
ctaagcttatttttcaggctcaatgtcaaagatacactagattagtatat
aaaaattcaaagtactaactcaaatgaaccattgttttgctgggctttaa
tattgttaaatgccaaaagtttttaaaactaaagtaaaaggtaacagatt
tagtgggcatgtcataattagtttttcagtccaacaggattttatatcag
caaatttaaagaggttcctatcattaaagtgtctaaaacaaacaccaaac
ctaaattttctgtagaaactctgacatgcgataactatatatatatatat
atatatatatatagttgcaataaagaaatatatcaatgcactcgttatat
aagcaccaagttctgtgtactaatgacaaactaaatggcattttgattct
gtttccatacccatctgcagaaagaaacacaaaaattaaagaatcttaaa
tattaagcaaagtttctgaataagcctggaaactgtctactgatttactt
agatttattttggtgatcattcttttagtaacataaaggaaacctgttac
tgaatctctagggttttgttttttccttatagagcagatgggcacacaca
gtggaatagtatttaagagtttctaacatccaggatatataggacccatg
tctttctgaacacacatgtattacagaacaagatgagacgaccacaacag
agtcctggtgactgacactgaaggaagcagccattgaggcaagggactct
tctttgctaagatcctactccctgtaggatgatagtaaagatacaccata
taggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50849299_50850463
seq2: B6Ng01-150P05.b_49_1201 (reverse)

seq1  CCTCCCAAATAACATGTAAATATTCTGTATGTTAGCAACTATGCTTAGCA  50
      |||||| ||||| |||||||| |||| ||||||||| |||| || |||||
seq2  CCTCCC-AATAA-ATGTAAAT-TTCT-TATGTTAGC-ACTAAGC-TAGCA  44

seq1  ATAAATGATAATAAACCCTTTAAGAATAGCGTGTTTTATTTGAAAACTAA  100
      ||||||  | ||||| || |||| |||||||| ||| ||| |||||||||
seq2  ATAAAT--TGATAAAACC-TTAAAAATAGCGTTTTTAATTGGAAAACTAA  91

seq1  ATGAATGTATGCCAGTGAGATGGCTTAGA-GAGG-AAATGTACTTGCTGC  148
      ||| ||||||||||||||||| || |||| |||| ||||||||| |||| 
seq2  ATG-ATGTATGCCAGTGAGAT-GCCTAGAGGAGGAAAATGTACTGGCTG-  138

seq1  CAAACCTAAAACTTGAATTTAGTCACTGGA-CCCCACATTTTAGAAGAAG  197
      |||||   |||||||||||||||||||||| ||||||| |||||||||||
seq2  CAAAC--TAAACTTGAATTTAGTCACTGGACCCCCACA-TTTAGAAGAAG  185

seq1  AGAACAGACTCTTGTCTATTCTTCACACAGGTATCATGGCACGTGTGTAT  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-ACAGACTCTTGTCTATTCTTCACACAGGTATCATGGCACGTGTGTAT  234

seq1  GTGCTTGCACAATCCAGTCACACATATACAAAAAAATAAATAGAGAAATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCACAATCCAGTCACACATATACAAAAAAATAAATAGAGAAATA  284

seq1  AATAAGTAAATGTGAATATTATTTCAAAATGAATATGAGATGCTGAAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAAATGTGAATATTATTTCAAAATGAATATGAGATGCTGAAATG  334

seq1  TAAGAATCC-TTAAATGGTCATTTATATGTTTTATCAAAGTACTAGTTAG  396
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATCCTTTAAATGGTCATTTATATGTTTTATCAAAGTACTAGTTAG  384

seq1  TAATTGTTGTTAATAATTTCAGTAAAGGCTTGGCCTTTGAAAGTCAAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTGTTAATAATTTCAGTAAAGGCTTGGCCTTTGAAAGTCAAAAT  434

seq1  GCATATGGTATCCATATAAACCACTATCCATTAACTTGTACACAACATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGTATCCATATAAACCACTATCCATTAACTTGTACACAACATCA  484

seq1  CAAAAGGTCACATTTAGTAGTTTTTAATGGACTTTAAGATGTAAAAGTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTCACATTTAGTAGTTTTTAATGGACTTTAAGATGTAAAAGTGT  534

seq1  AAACAAATTCAAATTTAAAATTAGTATATCCTAATACTCTCATACTCCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTCAAATTTAAAATTAGTATATCCTAATACTCTCATACTCCAA  584

seq1  AAATGATAACAGAAAGGAAGTTTGAGTGTTCAAAATTTTAAAGAATTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAACAGAAAGGAAGTTTGAGTGTTCAAAATTTTAAAGAATTTCC  634

seq1  CCTCTGTTATATAAAGCTGTGTTTTTCTGATGAAAGATGCATGTCTCTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTATATAAAGCTGTGTTTTTCTGATGAAAGATGCATGTCTCTTC  684

seq1  TTGTGAGTAAAGGCTTGTTGAAGGTGTGAGATAATGCCTATTGTTCATTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTAAAGGCTTGTTGAAGGTGTGAGATAATGCCTATTGTTCATTG  734

seq1  CCCATCTTATGAGAATTTAAATGACCTGTTCTAAAGCCTAAGACTTCATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTATGAGAATTTAAATGACCTGTTCTAAAGCCTAAGACTTCATC  784

seq1  CTTTAAGAATCTCTGAACTTGCTCCTGACTCTCCCCAGGCCACACCTTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAATCTCTGAACTTGCTCCTGACTCTCCCCAGGCCACACCTTTC  834

seq1  TGGACTCTTTACAAGACTCCCAGCCCCTCAGGCTGACCACCTGATCTCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTTTACAAGACTCCCAGCCCCTCAGGCTGACCACCTGATCTCTG  884

seq1  TCTGAAGCATTACCTTCTTCAAGAAACTTCCATAGCCAATTTCCCAACCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCATTACCTTCTTCAAGAAACTTCCATAGCCAATTTCCCAACCC  934

seq1  ATATTAAATATTTTCTTGCTTTCCATTTTTCAATATAAAATTTATAATCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATATTTTCTTGCTTTCCATTTTTCAATATAAAATTTATAATCT  984

seq1  CTAAAATCACATTGTATTACGAATACCTAATTTTTATCACTACACTGATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCACATTGTATTACGAATACCTAATTTTTATCACTACACTGATC  1034

seq1  TCTTGGTTTGTTCCTGCTTCTTTCTCCAAAATACAAATAGTTTAACAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTGTTCCTGCTTCTTTCTCCAAAATACAAATAGTTTAACAAAA  1084

seq1  TAAGCATTTGCCCCTATTCTTTCAGTGTCTACAGGTTCTACCATACTACA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTTGCCCCTATTCTTTCAGTGTCTACAGGTTCTACCATACTACA  1134

seq1  GGGCACATGGTAGGAATTC  1165
      |||||||||||||||||||
seq2  GGGCACATGGTAGGAATTC  1153

seq1: chr15_50706989_50708166
seq2: B6Ng01-150P05.g_65_1220

seq1  GAATTCTGTACTTCAAACACACCAAATGAAAATTGACTTGATTAGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACTTCAAACACACCAAATGAAAATTGACTTGATTAGAATCA  50

seq1  AGAAAAAAATAAACATTAATTATATCCATGTCAAAATCCATCCAAACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATAAACATTAATTATATCCATGTCAAAATCCATCCAAACCAT  100

seq1  GGCTAAATATGTAAAGTGAAGAGATTGTAAAATAAATAAATAAATAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATATGTAAAGTGAAGAGATTGTAAAATAAATAAATAAATAAAAT  150

seq1  AATCATATCTATACATTAAATATTTCATTTTACCGCATTTGAAGCTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATCTATACATTAAATATTTCATTTTACCGCATTTGAAGCTGAAA  200

seq1  TGTATCTATCATTTGAATTACAGGACTAAGAGGGAAAGAGTTAATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTATCATTTGAATTACAGGACTAAGAGGGAAAGAGTTAATAAAAA  250

seq1  AAGGTTTTTCCCCCTTTGTTCTTTTGATAAATTGTTTTTGTAAGTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTTCCCCCTTTGTTCTTTTGATAAATTGTTTTTGTAAGTGCTGA  300

seq1  GAAGTTTGTATAAAATGCTATGAACCCTTTCTTAACCACATTCAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGTATAAAATGCTATGAACCCTTTCTTAACCACATTCAAATAAA  350

seq1  CTAAGCTTATTTTTCAGGCTCAATGTCAAAGATACACTAGATTAGTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTATTTTTCAGGCTCAATGTCAAAGATACACTAGATTAGTATAT  400

seq1  AAAAATTCAAAGTACTAACTCAAATGAACCATTGTTTTGCTGGGCTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAAAGTACTAACTCAAATGAACCATTGTTTTGCTGGGCTTTAA  450

seq1  TATTGTTAAATGCCAAAAGTTTTTAAAACTAAAGTAAAAGGTAACAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAAATGCCAAAAGTTTTTAAAACTAAAGTAAAAGGTAACAGATT  500

seq1  TAGTGGGCATGTCATAATTAGTTTTTCAGTCCAACAGGATTTTATATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGCATGTCATAATTAGTTTTTCAGTCCAACAGGATTTTATATCAG  550

seq1  CAAATTTAAAGAGGTTCCTATCATTAAAGTGTCTAAAACAAACACCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAAAGAGGTTCCTATCATTAAAGTGTCTAAAACAAACACCAAAC  600

seq1  CTAAATTTTCTGTAGAAACTCTGACATGCGATAACTATATATATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTTCTGTAGAAACTCTGACATGCGATAACTATATATATATATAT  650

seq1  ATATATATATATAGTTGCAATAAAGAAATATATCAATGCACTCGTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATAGTTGCAATAAAGAAATATATCAATGCACTCGTTATAT  700

seq1  AAGCACCAAGTTCTGTGTACTAATGACAAACTAAATGGCATTTTGATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCAAGTTCTGTGTACTAATGACAAACTAAATGGCATTTTGATTCT  750

seq1  GTTTCCATACCCATCTGCAGAAAGAAACACAAAAATTAAAGAATCTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATACCCATCTGCAGAAAGAAACACAAAAATTAAAGAATCTTAAA  800

seq1  TATTAAGCAAAGTTTCTGAATAAGCCTGGAAACTGTCTACTGATTTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCAAAGTTTCTGAATAAGCCTGGAAACTGTCTACTGATTTACTT  850

seq1  AGATTTATTTTGGTGATCATTCTTTTAGTAACATAAGGAAAACCTGTTAC  900
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  AGATTTATTTTGGTGATCATTCTTTTAGTAACATAAAGGAAACCTGTTAC  900

seq1  TGAATCTCTAGGGTTTTGTTTTTTCCTTTATAGAGCAAGATGGGCACACA  950
      |||||||||||||||||||||||||| ||||||||| |||||||||||| 
seq2  TGAATCTCTAGGGTTTTGTTTTTTCC-TTATAGAGC-AGATGGGCACAC-  947

seq1  ACAGTGGAATAGTAATTTAAGGAGTTTCTAACATCCAGAATAATATAGGA  1000
      ||||||||||||| |||||| ||||||||||||||||| || ||||||||
seq2  ACAGTGGAATAGT-ATTTAA-GAGTTTCTAACATCCAGGAT-ATATAGGA  994

seq1  CCCCATTGTCTTTCTGAACACACATGTATTACAGAACAAAGATGAAGACA  1050
      |||   ||||||||||||||||||||||||||||||| |||||| |||| 
seq2  CCC--ATGTCTTTCTGAACACACATGTATTACAGAAC-AAGATG-AGAC-  1039

seq1  GACCACAACAGAGTCCTGGGTGACTGACAACTGAAGGAAAGCCAGCCATT  1100
      ||||||||||||||||| |||||||||| ||||||||||   ||||||||
seq2  GACCACAACAGAGTCCT-GGTGACTGAC-ACTGAAGGAA--GCAGCCATT  1085

seq1  GAGCAAAGGACCTTCCTTCCTTTGCTCAGGATCCTACTTCTCTGTAGGAT  1150
      |||  ||||  ||  ||| ||||||| | |||||||| || |||||||||
seq2  GAGGCAAGGGACT--CTT-CTTTGCT-AAGATCCTAC-TCCCTGTAGGAT  1130

seq1  GATTAGTAAAAGATCACA-CATATAGGCC  1178
      || |||| |||||| ||| ||||||||||
seq2  GA-TAGT-AAAGAT-ACACCATATAGGCC  1156